RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-208ENST00000457745 SIRT2Q8IXJ6 389 aa11.12□□□□□ -0.63
RIF1-208ENST00000457745 TTC5Q8N0Z6 440 aa11.12□□□□□ -0.63
RIF1-208ENST00000457745 MEIS3Q99687 375 aa11.12□□□□□ -0.63
RIF1-208ENST00000457745 STK31Q9BXU1 1019 aa11.12□□□□□ -0.63
RIF1-208ENST00000457745 FARP1Q9Y4F1 1045 aaPredicted RBP11.12□□□□□ -0.63
RIF1-208ENST00000457745 PTPRCP08575 1304 aa11.11□□□□□ -0.63
RIF1-208ENST00000457745 IPO8O15397 1037 aaKnown RBP11.11□□□□□ -0.63
RIF1-208ENST00000457745 FKBP5Q13451 457 aaPredicted RBP11.11□□□□□ -0.63
RIF1-208ENST00000457745 POTEAQ6S8J7 498 aa11.11□□□□□ -0.63
RIF1-208ENST00000457745 TTLL7Q6ZT98 887 aa11.11□□□□□ -0.63
RIF1-208ENST00000457745 SMIM5Q71RC9 77 aa11.11□□□□□ -0.63
RIF1-208ENST00000457745 FBXO41Q8TF61 875 aa11.11□□□□□ -0.63
RIF1-208ENST00000457745 XAGE3Q8WTP9 111 aa11.11□□□□□ -0.63
RIF1-208ENST00000457745 DDX21Q9NR30 783 aaKnown RBP eCLIP11.11□□□□□ -0.63
RIF1-208ENST00000457745 PXDNLA1KZ92 1463 aa11.11□□□□□ -0.63
RIF1-208ENST00000457745 LY75O60449 1722 aa11.1□□□□□ -0.63
RIF1-208ENST00000457745 PI4KAP2A4QPH2 592 aa11.1□□□□□ -0.63
RIF1-208ENST00000457745 AIMP1Q12904 312 aaKnown RBP11.1□□□□□ -0.63
RIF1-208ENST00000457745 SLC4A10Q6U841 1118 aa11.1□□□□□ -0.63
RIF1-208ENST00000457745 PI4KAP1Q8N8J0 262 aa11.1□□□□□ -0.63
RIF1-208ENST00000457745 DBF4Q9UBU7 674 aaPredicted RBP11.1□□□□□ -0.63
RIF1-208ENST00000457745 AFDNP55196 1824 aaKnown RBP11.09□□□□□ -0.63
RIF1-208ENST00000457745 PALLDQ8WX93 1383 aa11.09□□□□□ -0.63
RIF1-208ENST00000457745 BEND3Q5T5X7 828 aa11.09□□□□□ -0.63
RIF1-208ENST00000457745 COPS6Q7L5N1 327 aa11.09□□□□□ -0.63
RIF1-208ENST00000457745 DDX19BQ9UMR2 479 aa11.09□□□□□ -0.63
RIF1-208ENST00000457745 TAF1LQ8IZX4 1826 aa11.08□□□□□ -0.64
RIF1-208ENST00000457745 IGKV5-2P06315 115 aa11.08□□□□□ -0.64
RIF1-208ENST00000457745 CYP19A1P11511 503 aaPredicted RBP11.08□□□□□ -0.64
RIF1-208ENST00000457745 VASPP50552 380 aaPredicted RBP11.08□□□□□ -0.64
RIF1-208ENST00000457745 CWF19L2Q2TBE0 894 aaKnown RBP11.08□□□□□ -0.64
RIF1-208ENST00000457745 AMIGO3Q86WK7 504 aa11.08□□□□□ -0.64
RIF1-208ENST00000457745 ZBTB1Q9Y2K1 713 aa11.08□□□□□ -0.64
RIF1-208ENST00000457745 MAP3K2Q9Y2U5 619 aa11.08□□□□□ -0.64
RIF1-208ENST00000457745 ZNF831Q5JPB2 1677 aa11.08□□□□□ -0.64
RIF1-208ENST00000457745 INTS5Q6P9B9 1019 aaKnown RBP11.07□□□□□ -0.64
RIF1-208ENST00000457745 LINC00116Q8NCU8 138 aa11.07□□□□□ -0.64
RIF1-208ENST00000457745 DNAAF4Q8WXU2 420 aa11.07□□□□□ -0.64
RIF1-208ENST00000457745 JARID2Q92833 1246 aaPredicted RBP11.07□□□□□ -0.64
RIF1-208ENST00000457745 KSR2Q6VAB6 950 aa11.06□□□□□ -0.64
RIF1-208ENST00000457745 USP44Q9H0E7 712 aa11.06□□□□□ -0.64
RIF1-208ENST00000457745 HYPKQ9NX55 129 aa11.06□□□□□ -0.64
RIF1-208ENST00000457745 TNS1Q9HBL0 1735 aaKnown RBP11.06□□□□□ -0.64
RIF1-208ENST00000457745 LOC102724428A0A0B4J2F2 783 aa11.05□□□□□ -0.64
RIF1-208ENST00000457745 NBPF7P0C2Y1 421 aaPredicted RBP11.05□□□□□ -0.64
RIF1-208ENST00000457745 MS4A1P11836 297 aa11.05□□□□□ -0.64
RIF1-208ENST00000457745 SIK1P57059 783 aa11.05□□□□□ -0.64
RIF1-208ENST00000457745 KAZALD1Q96I82 304 aa11.05□□□□□ -0.64
RIF1-208ENST00000457745 PLSCR2Q9NRY7 297 aa11.05□□□□□ -0.64
RIF1-208ENST00000457745 ANKRD36CQ5JPF3 1778 aa11.04□□□□□ -0.64
RIF1-208ENST00000457745 BCORQ6W2J9 1755 aa11.04□□□□□ -0.64
RIF1-208ENST00000457745 POTEIP0CG38 1075 aa11.04□□□□□ -0.64
RIF1-208ENST00000457745 CCT4P50991 539 aaKnown RBP11.04□□□□□ -0.64
RIF1-208ENST00000457745 RBM6P78332 1123 aaKnown RBP11.04□□□□□ -0.64
RIF1-208ENST00000457745 CEP85Q6P2H3 762 aa11.04□□□□□ -0.64
RIF1-208ENST00000457745 VSIG10Q8N0Z9 540 aa11.04□□□□□ -0.64
RIF1-208ENST00000457745 MYD88Q99836 296 aa11.04□□□□□ -0.64
RIF1-208ENST00000457745 ZBTB3Q9H5J0 574 aa11.04□□□□□ -0.64
RIF1-208ENST00000457745 NUP98P52948 1817 aa11.04□□□□□ -0.64
RIF1-208ENST00000457745 ERBB4Q15303 1308 aa11.04□□□□□ -0.64
RIF1-208ENST00000457745 ATP5J2-PTCD1G3V325 749 aa11.03□□□□□ -0.64
RIF1-208ENST00000457745 PDE4AP27815 886 aa11.03□□□□□ -0.64
RIF1-208ENST00000457745 ATP6V1AP38606 617 aa11.03□□□□□ -0.64
RIF1-208ENST00000457745 CRKLP46109 303 aaKnown RBP11.03□□□□□ -0.64
RIF1-208ENST00000457745 HLFQ16534 295 aa11.03□□□□□ -0.64
RIF1-208ENST00000457745 EPHA10Q5JZY3 1008 aa11.03□□□□□ -0.64
RIF1-208ENST00000457745 KRT27Q7Z3Y8 459 aa11.03□□□□□ -0.64
RIF1-208ENST00000457745 METTL22Q9BUU2 404 aaPredicted RBP11.03□□□□□ -0.64
RIF1-208ENST00000457745 SRCIN1Q9C0H9 1055 aa11.03□□□□□ -0.64
RIF1-208ENST00000457745 ZBTB47Q9UFB7 747 aaPredicted RBP11.03□□□□□ -0.64
RIF1-208ENST00000457745 LRRFIP2Q9Y608 721 aaKnown RBP11.03□□□□□ -0.64
RIF1-208ENST00000457745 C4AP0C0L4 1744 aa11.02□□□□□ -0.65
RIF1-208ENST00000457745 C4BP0C0L5 1744 aa11.02□□□□□ -0.65
RIF1-208ENST00000457745 PNMA6EA0A0J9YXQ4 647 aa11.02□□□□□ -0.65
RIF1-208ENST00000457745 NEURL1BA8MQ27 555 aa11.02□□□□□ -0.65
RIF1-208ENST00000457745 CD44P16070 742 aaKnown RBP11.02□□□□□ -0.65
RIF1-208ENST00000457745 HDAC1Q13547 482 aaPredicted RBP11.02□□□□□ -0.65
RIF1-208ENST00000457745 ZNF772Q68DY9 489 aaPredicted RBP11.02□□□□□ -0.65
RIF1-208ENST00000457745 CENPQQ7L2Z9 268 aaPredicted RBP11.02□□□□□ -0.65
RIF1-208ENST00000457745 SUCLG2Q96I99 432 aa11.02□□□□□ -0.65
RIF1-208ENST00000457745 LRRC4BQ9NT99 713 aa11.02□□□□□ -0.65
RIF1-208ENST00000457745 PDZRN3Q9UPQ7 1066 aa11.02□□□□□ -0.65
RIF1-208ENST00000457745 ZNF330Q9Y3S2 320 aaPredicted RBP11.02□□□□□ -0.65
RIF1-208ENST00000457745 TUBGCP6Q96RT7 1819 aa11.01□□□□□ -0.65
RIF1-208ENST00000457745 TRIM37O94972 964 aa11.01□□□□□ -0.65
RIF1-208ENST00000457745 MNX1P50219 401 aaPredicted RBP11.01□□□□□ -0.65
RIF1-208ENST00000457745 CASP7P55210 303 aa11.01□□□□□ -0.65
RIF1-208ENST00000457745 ANKRD13DQ6ZTN6 518 aa11.01□□□□□ -0.65
RIF1-208ENST00000457745 RIC3Q7Z5B4 369 aa11.01□□□□□ -0.65
RIF1-208ENST00000457745 SMC5Q8IY18 1101 aa11.01□□□□□ -0.65
RIF1-208ENST00000457745 KLHL34Q8N239 644 aa11.01□□□□□ -0.65
RIF1-208ENST00000457745 ANKRD44Q8N8A2 993 aa11.01□□□□□ -0.65
RIF1-208ENST00000457745 PLBD2Q8NHP8 589 aa11.01□□□□□ -0.65
RIF1-208ENST00000457745 CCDC87Q9NVE4 849 aa11.01□□□□□ -0.65
RIF1-208ENST00000457745 COL4A1P02462 1669 aa11.01□□□□□ -0.65
RIF1-208ENST00000457745 SCN7AQ01118 1682 aa11.01□□□□□ -0.65
RIF1-208ENST00000457745 EIF5P55010 431 aaKnown RBP11□□□□□ -0.65
RIF1-208ENST00000457745 LINS1Q8NG48 757 aa11□□□□□ -0.65
RIF1-208ENST00000457745 TBC1D2BQ9UPU7 963 aa11□□□□□ -0.65
RIF1-208ENST00000457745 UBR3Q6ZT12 1888 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms