RNA–Protein interactions for RNA: ENST00000456385.5

CLIP4-208, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2

Gene CLIP4, Length 2,311 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-208ENST00000456385 CLIP2Q9UDT6 1046 aa12.26□□□□□ -0.45
CLIP4-208ENST00000456385 SOS1Q07889 1333 aaPredicted RBP12.25□□□□□ -0.45
CLIP4-208ENST00000456385 SURF6O75683 361 aaKnown RBP12.25□□□□□ -0.45
CLIP4-208ENST00000456385 HSP90AB2PQ58FF8 381 aa12.25□□□□□ -0.45
CLIP4-208ENST00000456385 CEP135Q66GS9 1140 aa12.25□□□□□ -0.45
CLIP4-208ENST00000456385 USP44Q9H0E7 712 aa12.25□□□□□ -0.45
CLIP4-208ENST00000456385 ST7Q9NRC1 585 aa12.25□□□□□ -0.45
CLIP4-208ENST00000456385 TFIP11Q9UBB9 837 aaKnown RBP12.25□□□□□ -0.45
CLIP4-208ENST00000456385 ZNF215Q9UL58 517 aaPredicted RBP12.25□□□□□ -0.45
CLIP4-208ENST00000456385 ALKQ9UM73 1620 aa12.25□□□□□ -0.45
CLIP4-208ENST00000456385 KCNJ4P48050 445 aa12.25□□□□□ -0.45
CLIP4-208ENST00000456385 KRT85P78386 507 aa12.25□□□□□ -0.45
CLIP4-208ENST00000456385 FBXO31Q5XUX0 539 aaPredicted RBP12.25□□□□□ -0.45
CLIP4-208ENST00000456385 LARP1BQ659C4 914 aaKnown RBP12.25□□□□□ -0.45
CLIP4-208ENST00000456385 PRPF40BQ6NWY9 871 aaKnown RBP12.25□□□□□ -0.45
CLIP4-208ENST00000456385 STK31Q9BXU1 1019 aa12.25□□□□□ -0.45
CLIP4-208ENST00000456385 DNAJC25Q9H1X3 360 aa12.25□□□□□ -0.45
CLIP4-208ENST00000456385 MLH3Q9UHC1 1453 aa12.24□□□□□ -0.45
CLIP4-208ENST00000456385 AOX1Q06278 1338 aa12.24□□□□□ -0.45
CLIP4-208ENST00000456385 SOX12O15370 315 aa12.24□□□□□ -0.45
CLIP4-208ENST00000456385 KLHL34Q8N239 644 aa12.24□□□□□ -0.45
CLIP4-208ENST00000456385 ERICH4A6NGS2 130 aa12.23□□□□□ -0.45
CLIP4-208ENST00000456385 WASLO00401 505 aaPredicted RBP12.23□□□□□ -0.45
CLIP4-208ENST00000456385 ZNF165P49910 485 aa12.23□□□□□ -0.45
CLIP4-208ENST00000456385 VPS53Q5VIR6 699 aa12.23□□□□□ -0.45
CLIP4-208ENST00000456385 KRT222Q8N1A0 295 aa12.23□□□□□ -0.45
CLIP4-208ENST00000456385 RHPN1Q8TCX5 695 aa12.23□□□□□ -0.45
CLIP4-208ENST00000456385 PREX1Q8TCU6 1659 aa12.23□□□□□ -0.45
CLIP4-208ENST00000456385 NR1I2O75469 434 aa12.23□□□□□ -0.45
CLIP4-208ENST00000456385 IRX5P78411 483 aaPredicted RBP12.23□□□□□ -0.45
CLIP4-208ENST00000456385 MTHFSDQ2M296 383 aaKnown RBP12.23□□□□□ -0.45
CLIP4-208ENST00000456385 FBXO38Q6PIJ6 1188 aa12.23□□□□□ -0.45
CLIP4-208ENST00000456385 PPP1R42Q7Z4L9 355 aa12.23□□□□□ -0.45
CLIP4-208ENST00000456385 CNTROBQ8N137 903 aa12.23□□□□□ -0.45
CLIP4-208ENST00000456385 NUDT16Q96DE0 195 aaKnown RBP12.23□□□□□ -0.45
CLIP4-208ENST00000456385 TPCN1Q9ULQ1 816 aa12.23□□□□□ -0.45
CLIP4-208ENST00000456385 NPHP1O15259 732 aa12.22□□□□□ -0.45
CLIP4-208ENST00000456385 UBTFL1P0CB47 393 aaPredicted RBP12.22□□□□□ -0.45
CLIP4-208ENST00000456385 RBM6P78332 1123 aaKnown RBP12.22□□□□□ -0.45
CLIP4-208ENST00000456385 TDRD7Q8NHU6 1098 aaKnown RBP12.22□□□□□ -0.45
CLIP4-208ENST00000456385 SSH3Q8TE77 659 aa12.22□□□□□ -0.45
CLIP4-208ENST00000456385 CYP46A1Q9Y6A2 500 aa12.22□□□□□ -0.45
CLIP4-208ENST00000456385 TMEM131LA2VDJ0 1609 aa12.22□□□□□ -0.45
CLIP4-208ENST00000456385 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.22□□□□□ -0.45
CLIP4-208ENST00000456385 GOLGA6L4A6NEF3 574 aa12.22□□□□□ -0.45
CLIP4-208ENST00000456385 ELF2Q15723 593 aa12.22□□□□□ -0.45
CLIP4-208ENST00000456385 LRRC8AQ8IWT6 810 aa12.22□□□□□ -0.45
CLIP4-208ENST00000456385 ZNF397Q8NF99 534 aaPredicted RBP12.22□□□□□ -0.45
CLIP4-208ENST00000456385 TCEANC2Q96MN5 208 aa12.22□□□□□ -0.45
CLIP4-208ENST00000456385 ZSWIM6Q9HCJ5 1215 aa12.22□□□□□ -0.45
CLIP4-208ENST00000456385 TRMT1Q9NXH9 659 aaKnown RBP12.22□□□□□ -0.45
CLIP4-208ENST00000456385 STAG3Q9UJ98 1225 aa12.22□□□□□ -0.45
CLIP4-208ENST00000456385 TTC21AQ8NDW8 1320 aa12.22□□□□□ -0.45
CLIP4-208ENST00000456385 MAPK8IP2Q13387 824 aaPredicted RBP12.21□□□□□ -0.45
CLIP4-208ENST00000456385 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.21□□□□□ -0.45
CLIP4-208ENST00000456385 SPATA32Q96LK8 384 aa12.21□□□□□ -0.45
CLIP4-208ENST00000456385 SH2B1Q9NRF2 756 aaPredicted RBP12.21□□□□□ -0.45
CLIP4-208ENST00000456385 SRGAP3O43295 1099 aa12.21□□□□□ -0.46
CLIP4-208ENST00000456385 ZSCAN31Q96LW9 406 aaPredicted RBP12.21□□□□□ -0.46
CLIP4-208ENST00000456385 ELP1O95163 1332 aa12.21□□□□□ -0.46
CLIP4-208ENST00000456385 PTPN14Q15678 1187 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 LEO1Q8WVC0 666 aaPredicted RBP12.2□□□□□ -0.46
CLIP4-208ENST00000456385 CLSTN2Q9H4D0 955 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 MAP3K19Q56UN5 1328 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 A0A087WWV3 80 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 SKILP12757 684 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 CCDC30Q5VVM6 783 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 LARP1Q6PKG0 1096 aaKnown RBP12.2□□□□□ -0.46
CLIP4-208ENST00000456385 RBM43Q6ZSC3 357 aaKnown RBP12.2□□□□□ -0.46
CLIP4-208ENST00000456385 NYAP1Q6ZVC0 841 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 TXNDC2Q86VQ3 553 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 PGBD1Q96JS3 809 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 ZNF446Q9NWS9 450 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 FAM53CQ9NYF3 392 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 USP16Q9Y5T5 823 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 ERBB3P21860 1342 aa12.2□□□□□ -0.46
CLIP4-208ENST00000456385 RAB11FIP3O75154 756 aa12.19□□□□□ -0.46
CLIP4-208ENST00000456385 DDX19AQ9NUU7 478 aaKnown RBP12.19□□□□□ -0.46
CLIP4-208ENST00000456385 CCDC61Q9Y6R9 512 aa12.19□□□□□ -0.46
CLIP4-208ENST00000456385 ARHGEF10O15013 1369 aa12.19□□□□□ -0.46
CLIP4-208ENST00000456385 PDE4CQ08493 712 aa12.19□□□□□ -0.46
CLIP4-208ENST00000456385 NECTIN1Q15223 517 aa12.19□□□□□ -0.46
CLIP4-208ENST00000456385 FILIP1Q7Z7B0 1213 aa12.19□□□□□ -0.46
CLIP4-208ENST00000456385 BICD2Q8TD16 824 aa12.19□□□□□ -0.46
CLIP4-208ENST00000456385 PHAXQ9H814 394 aaKnown RBP12.19□□□□□ -0.46
CLIP4-208ENST00000456385 CCDC66A2RUB6 948 aa12.18□□□□□ -0.46
CLIP4-208ENST00000456385 NBPF7P0C2Y1 421 aaPredicted RBP12.18□□□□□ -0.46
CLIP4-208ENST00000456385 STK3Q13188 491 aa12.18□□□□□ -0.46
CLIP4-208ENST00000456385 POLA2Q14181 598 aa12.18□□□□□ -0.46
CLIP4-208ENST00000456385 C11orf57Q6ZUT1 292 aaPredicted RBP12.18□□□□□ -0.46
CLIP4-208ENST00000456385 SYTL4Q96C24 671 aaPredicted RBP12.18□□□□□ -0.46
CLIP4-208ENST00000456385 KIF1BPQ96EK5 621 aa12.18□□□□□ -0.46
CLIP4-208ENST00000456385 TIGD1Q96MW7 591 aa12.18□□□□□ -0.46
CLIP4-208ENST00000456385 SCAND2PQ9GZW5 306 aaPredicted RBP12.18□□□□□ -0.46
CLIP4-208ENST00000456385 NAP1L2Q9ULW6 460 aaPredicted RBP12.18□□□□□ -0.46
CLIP4-208ENST00000456385 NPHP3Q7Z494 1330 aa12.18□□□□□ -0.46
CLIP4-208ENST00000456385 CDK11BP21127 795 aaKnown RBP12.17□□□□□ -0.46
CLIP4-208ENST00000456385 IQCB1Q15051 598 aa12.17□□□□□ -0.46
CLIP4-208ENST00000456385 TM6SF1Q9BZW5 370 aa12.17□□□□□ -0.46
CLIP4-208ENST00000456385 TAF6LQ9Y6J9 622 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms