RNA–Protein interactions for RNA: ENST00000449971.5

FAM3A-216, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 5

Gene FAM3A, Length 1,056 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-216ENST00000449971 NPM2Q86SE8 214 aaKnown RBP23.21■■□□□ 1.31
FAM3A-216ENST00000449971 ZNF496Q96IT1 587 aaPredicted RBP23.21■■□□□ 1.31
FAM3A-216ENST00000449971 CREBZFQ9NS37 354 aa23.21■■□□□ 1.31
FAM3A-216ENST00000449971 ANKRD31Q8N7Z5 1873 aa23.2■■□□□ 1.3
FAM3A-216ENST00000449971 HTATSF1O43719 755 aaKnown RBP23.2■■□□□ 1.3
FAM3A-216ENST00000449971 CNBD1Q8NA66 436 aa23.2■■□□□ 1.3
FAM3A-216ENST00000449971 PLEKHF1Q96S99 279 aa23.19■■□□□ 1.3
FAM3A-216ENST00000449971 SETDB2Q96T68 719 aa23.19■■□□□ 1.3
FAM3A-216ENST00000449971 KCNQ3O43525 872 aa23.18■■□□□ 1.3
FAM3A-216ENST00000449971 A1BGP04217 495 aa23.18■■□□□ 1.3
FAM3A-216ENST00000449971 PRPF40BQ6NWY9 871 aaKnown RBP23.18■■□□□ 1.3
FAM3A-216ENST00000449971 PDZRN3Q9UPQ7 1066 aa23.18■■□□□ 1.3
FAM3A-216ENST00000449971 COL11A2P13942 1736 aaPredicted RBP23.18■■□□□ 1.3
FAM3A-216ENST00000449971 MAPK8IP3Q9UPT6 1336 aa23.17■■□□□ 1.3
FAM3A-216ENST00000449971 ST5P78524 1137 aa23.17■■□□□ 1.3
FAM3A-216ENST00000449971 CNKSR1Q969H4 720 aa23.17■■□□□ 1.3
FAM3A-216ENST00000449971 FMNL2Q96PY5 1086 aa23.17■■□□□ 1.3
FAM3A-216ENST00000449971 HEG1Q9ULI3 1381 aa23.16■■□□□ 1.3
FAM3A-216ENST00000449971 FOXN1O15353 648 aa23.16■■□□□ 1.3
FAM3A-216ENST00000449971 PIP4K2AP48426 406 aaPredicted RBP23.16■■□□□ 1.3
FAM3A-216ENST00000449971 FER1L6Q2WGJ9 1857 aa23.15■■□□□ 1.3
FAM3A-216ENST00000449971 UBR2Q8IWV8 1755 aa23.15■■□□□ 1.3
FAM3A-216ENST00000449971 NFE2L2Q16236 605 aa23.15■■□□□ 1.3
FAM3A-216ENST00000449971 EAPPQ56P03 285 aaPredicted RBP23.15■■□□□ 1.3
FAM3A-216ENST00000449971 TEX13AQ9BXU3 409 aaPredicted RBP23.15■■□□□ 1.3
FAM3A-216ENST00000449971 CACNA1SQ13698 1873 aa23.15■■□□□ 1.3
FAM3A-216ENST00000449971 DICER1Q9UPY3 1922 aaKnown RBP23.14■■□□□ 1.3
FAM3A-216ENST00000449971 IL6STP40189 918 aaPredicted RBP23.14■■□□□ 1.29
FAM3A-216ENST00000449971 PRKRIP1Q9H875 184 aaPredicted RBP23.14■■□□□ 1.29
FAM3A-216ENST00000449971 SLX4Q8IY92 1834 aa23.14■■□□□ 1.29
FAM3A-216ENST00000449971 LTBP3Q9NS15 1303 aa23.13■■□□□ 1.29
FAM3A-216ENST00000449971 SCN7AQ01118 1682 aa23.13■■□□□ 1.29
FAM3A-216ENST00000449971 CAMTA2O94983 1202 aa23.13■■□□□ 1.29
FAM3A-216ENST00000449971 SRGNP10124 158 aa23.13■■□□□ 1.29
FAM3A-216ENST00000449971 TAF7Q15545 349 aaPredicted RBP23.13■■□□□ 1.29
FAM3A-216ENST00000449971 STYK1Q6J9G0 422 aa23.13■■□□□ 1.29
FAM3A-216ENST00000449971 DZIP3Q86Y13 1208 aaKnown RBP23.13■■□□□ 1.29
FAM3A-216ENST00000449971 LDHDQ86WU2 507 aa23.12■■□□□ 1.29
FAM3A-216ENST00000449971 AIDAQ96BJ3 306 aa23.12■■□□□ 1.29
FAM3A-216ENST00000449971 MASTLQ96GX5 879 aa23.12■■□□□ 1.29
FAM3A-216ENST00000449971 CLEC11AQ9Y240 323 aa23.12■■□□□ 1.29
FAM3A-216ENST00000449971 CNTNAP1P78357 1384 aa23.12■■□□□ 1.29
FAM3A-216ENST00000449971 IQCA1LA6NCM1 817 aa23.11■■□□□ 1.29
FAM3A-216ENST00000449971 SOGA3Q5TF21 947 aa23.11■■□□□ 1.29
FAM3A-216ENST00000449971 TAF1DQ9H5J8 278 aaPredicted RBP23.11■■□□□ 1.29
FAM3A-216ENST00000449971 WDR43Q15061 677 aaKnown RBP eCLIP23.1■■□□□ 1.29
FAM3A-216ENST00000449971 NBPF5PQ86XG9 351 aaPredicted RBP23.1■■□□□ 1.29
FAM3A-216ENST00000449971 ZNF277Q9NRM2 450 aaPredicted RBP23.1■■□□□ 1.29
FAM3A-216ENST00000449971 MIS18AQ9NYP9 233 aa23.1■■□□□ 1.29
FAM3A-216ENST00000449971 FAM177BA6PVY3 158 aa23.09■■□□□ 1.29
FAM3A-216ENST00000449971 VEGFBP49765 207 aa23.09■■□□□ 1.29
FAM3A-216ENST00000449971 CCDC93Q567U6 631 aa23.09■■□□□ 1.29
FAM3A-216ENST00000449971 THUMPD2Q9BTF0 503 aaKnown RBP23.09■■□□□ 1.29
FAM3A-216ENST00000449971 ZNF316A6NFI3 1004 aaPredicted RBP23.08■■□□□ 1.29
FAM3A-216ENST00000449971 TMEM88BA6NKF7 163 aa23.08■■□□□ 1.29
FAM3A-216ENST00000449971 OLFM4Q6UX06 510 aa23.08■■□□□ 1.29
FAM3A-216ENST00000449971 ZNF541Q9H0D2 1346 aa23.08■■□□□ 1.28
FAM3A-216ENST00000449971 SNRPA1P09661 255 aaKnown RBP23.07■■□□□ 1.28
FAM3A-216ENST00000449971 RIPK4P57078 832 aa23.07■■□□□ 1.28
FAM3A-216ENST00000449971 CCDC146Q8IYE0 955 aa23.07■■□□□ 1.28
FAM3A-216ENST00000449971 PNISRQ8TF01 805 aaKnown RBP23.07■■□□□ 1.28
FAM3A-216ENST00000449971 USP16Q9Y5T5 823 aa23.07■■□□□ 1.28
FAM3A-216ENST00000449971 PASKQ96RG2 1323 aa23.07■■□□□ 1.28
FAM3A-216ENST00000449971 SIPA1L3O60292 1781 aaPredicted RBP23.06■■□□□ 1.28
FAM3A-216ENST00000449971 PRAMEF22A3QJZ6 481 aa23.06■■□□□ 1.28
FAM3A-216ENST00000449971 CTCFP49711 727 aaPredicted RBP23.06■■□□□ 1.28
FAM3A-216ENST00000449971 PRDM10Q9NQV6 1147 aa23.05■■□□□ 1.28
FAM3A-216ENST00000449971 HACL1Q9UJ83 578 aa23.05■■□□□ 1.28
FAM3A-216ENST00000449971 NPR1P16066 1061 aa23.04■■□□□ 1.28
FAM3A-216ENST00000449971 TMPOP42166 694 aaKnown RBP23.04■■□□□ 1.28
FAM3A-216ENST00000449971 LBX1P52954 281 aa23.04■■□□□ 1.28
FAM3A-216ENST00000449971 FKBP4Q02790 459 aaKnown RBP eCLIP23.04■■□□□ 1.28
FAM3A-216ENST00000449971 L3MBTL3Q96JM7 780 aaPredicted RBP23.04■■□□□ 1.28
FAM3A-216ENST00000449971 ADAMTS8Q9UP79 889 aa23.04■■□□□ 1.28
FAM3A-216ENST00000449971 EPHX2P34913 555 aa23.03■■□□□ 1.28
FAM3A-216ENST00000449971 C7orf43Q8WVR3 580 aa23.03■■□□□ 1.28
FAM3A-216ENST00000449971 ZNF652Q9Y2D9 606 aa23.03■■□□□ 1.28
FAM3A-216ENST00000449971 RRP7AQ9Y3A4 280 aaKnown RBP23.03■■□□□ 1.28
FAM3A-216ENST00000449971 RNF123Q5XPI4 1314 aa23.03■■□□□ 1.28
FAM3A-216ENST00000449971 ITGBL1O95965 494 aaPredicted RBP23.02■■□□□ 1.28
FAM3A-216ENST00000449971 NEUROD2Q15784 382 aa23.02■■□□□ 1.28
FAM3A-216ENST00000449971 MAP1SQ66K74 1059 aaPredicted RBP23.02■■□□□ 1.28
FAM3A-216ENST00000449971 RUNDC1Q96C34 613 aa23.02■■□□□ 1.28
FAM3A-216ENST00000449971 NIP7Q9Y221 180 aaKnown RBP eCLIP23.02■■□□□ 1.28
FAM3A-216ENST00000449971 LMOD3Q0VAK6 560 aa23.01■■□□□ 1.27
FAM3A-216ENST00000449971 ABT1Q9ULW3 272 aaKnown RBP23■■□□□ 1.27
FAM3A-216ENST00000449971 BCORQ6W2J9 1755 aa22.99■■□□□ 1.27
FAM3A-216ENST00000449971 SCN4AP35499 1836 aa22.99■■□□□ 1.27
FAM3A-216ENST00000449971 GTF2E1P29083 439 aaPredicted RBP22.99■■□□□ 1.27
FAM3A-216ENST00000449971 TPTE2Q6XPS3 522 aa22.99■■□□□ 1.27
FAM3A-216ENST00000449971 CNTROBQ8N137 903 aa22.99■■□□□ 1.27
FAM3A-216ENST00000449971 SYNE4Q8N205 404 aa22.99■■□□□ 1.27
FAM3A-216ENST00000449971 ARFGEF2Q9Y6D5 1785 aa22.99■■□□□ 1.27
FAM3A-216ENST00000449971 IARSP41252 1262 aaKnown RBP22.98■■□□□ 1.27
FAM3A-216ENST00000449971 EIF4A1P60842 406 aaKnown RBP22.98■■□□□ 1.27
FAM3A-216ENST00000449971 DEFB115Q30KQ5 88 aa22.98■■□□□ 1.27
FAM3A-216ENST00000449971 CLEC4GQ6UXB4 293 aa22.98■■□□□ 1.27
FAM3A-216ENST00000449971 RTKN2Q8IZC4 609 aa22.98■■□□□ 1.27
FAM3A-216ENST00000449971 WBP1LQ9NX94 342 aa22.98■■□□□ 1.27
FAM3A-216ENST00000449971 GJA3Q9Y6H8 435 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms