RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 NUP133Q8WUM0 1156 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 UBAC1Q9BSL1 405 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 SNRKQ9NRH2 765 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 USP21Q9UK80 565 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 DIP2CQ9Y2E4 1556 aa8.81□□□□□ -1
SYNE1-213ENST00000448038 AATKQ6ZMQ8 1374 aa8.8□□□□□ -1
SYNE1-213ENST00000448038 PES1O00541 588 aaKnown RBP8.8□□□□□ -1
SYNE1-213ENST00000448038 NUCB1Q02818 461 aa8.8□□□□□ -1
SYNE1-213ENST00000448038 PRPF40BQ6NWY9 871 aaKnown RBP8.8□□□□□ -1
SYNE1-213ENST00000448038 GOLIM4O00461 696 aa8.8□□□□□ -1
SYNE1-213ENST00000448038 ATP2B1P20020 1258 aa8.8□□□□□ -1
SYNE1-213ENST00000448038 CASTP20810 708 aaKnown RBP8.8□□□□□ -1
SYNE1-213ENST00000448038 PRIM1P49642 420 aaKnown RBP8.8□□□□□ -1
SYNE1-213ENST00000448038 UTP14AQ9BVJ6 771 aaKnown RBP8.8□□□□□ -1
SYNE1-213ENST00000448038 CWC22Q9HCG8 908 aaKnown RBP8.8□□□□□ -1
SYNE1-213ENST00000448038 U3KPZ7 1027 aaPredicted RBP8.8□□□□□ -1
SYNE1-213ENST00000448038 HOXB7P09629 217 aa8.8□□□□□ -1
SYNE1-213ENST00000448038 BMP2KLQ5H9B9 411 aa8.8□□□□□ -1
SYNE1-213ENST00000448038 NLRP3Q96P20 1036 aa8.8□□□□□ -1
SYNE1-213ENST00000448038 HOOK1Q9UJC3 728 aaKnown RBP8.8□□□□□ -1
SYNE1-213ENST00000448038 TRIM22Q8IYM9 498 aa8.8□□□□□ -1
SYNE1-213ENST00000448038 E9PCH4 1651 aa8.8□□□□□ -1
SYNE1-213ENST00000448038 BLMP54132 1417 aaPredicted RBP8.79□□□□□ -1
SYNE1-213ENST00000448038 ARHGEF25Q86VW2 580 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 CCDC47Q96A33 483 aaKnown RBP8.79□□□□□ -1
SYNE1-213ENST00000448038 USP5P45974 858 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 ANKRD18AQ8IVF6 992 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 ZNF622Q969S3 477 aaKnown RBP eCLIP8.79□□□□□ -1
SYNE1-213ENST00000448038 NAPBQ9H115 298 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 TMOD2Q9NZR1 351 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 KIAA0232Q92628 1395 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 MINDY4BA8MYZ0 360 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 NFKBIBQ15653 356 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 TTC22Q5TAA0 569 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 ZBTB40Q9NUA8 1239 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 PA2G4Q9UQ80 394 aaKnown RBP8.79□□□□□ -1
SYNE1-213ENST00000448038 ADGRB3O60242 1522 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 ALKQ9UM73 1620 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 INO80Q9ULG1 1556 aaPredicted RBP8.79□□□□□ -1
SYNE1-213ENST00000448038 ZSCAN31Q96LW9 406 aaPredicted RBP8.79□□□□□ -1
SYNE1-213ENST00000448038 UPF3BQ9BZI7 483 aaKnown RBP8.79□□□□□ -1
SYNE1-213ENST00000448038 TFCP2L1Q9NZI6 479 aa8.79□□□□□ -1
SYNE1-213ENST00000448038 GSE1Q14687 1217 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 CEP85Q6P2H3 762 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 LMTK2Q8IWU2 1503 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 GNPATO15228 680 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 TTF1Q15361 905 aaPredicted RBP8.78□□□□□ -1
SYNE1-213ENST00000448038 TPTE2Q6XPS3 522 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 TBC1D9Q6ZT07 1266 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 ZNF496Q96IT1 587 aaPredicted RBP8.78□□□□□ -1
SYNE1-213ENST00000448038 CAMSAP1Q5T5Y3 1602 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 IRS4O14654 1257 aaPredicted RBP8.78□□□□□ -1
SYNE1-213ENST00000448038 A1BGP04217 495 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 IL15P40933 162 aaPredicted RBP8.78□□□□□ -1
SYNE1-213ENST00000448038 IL17REQ8NFR9 667 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 NYXQ9GZU5 481 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 CLTCQ00610 1675 aaKnown RBP8.78□□□□□ -1
SYNE1-213ENST00000448038 TRPM1Q7Z4N2 1603 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 POLR3DP05423 398 aaPredicted RBP8.78□□□□□ -1
SYNE1-213ENST00000448038 PHKG2P15735 406 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 ATP2B3Q16720 1220 aa8.78□□□□□ -1
SYNE1-213ENST00000448038 CCNL1Q9UK58 526 aaPredicted RBP8.78□□□□□ -1
SYNE1-213ENST00000448038 EIF4A1P60842 406 aaKnown RBP8.77□□□□□ -1
SYNE1-213ENST00000448038 LARP1BQ659C4 914 aaKnown RBP8.77□□□□□ -1
SYNE1-213ENST00000448038 PLBD2Q8NHP8 589 aa8.77□□□□□ -1
SYNE1-213ENST00000448038 ERVV-2B6SEH9 535 aa8.77□□□□□ -1.01
SYNE1-213ENST00000448038 UQCRFS1P1P0C7P4 283 aa8.77□□□□□ -1.01
SYNE1-213ENST00000448038 PDE1AP54750 535 aa8.77□□□□□ -1.01
SYNE1-213ENST00000448038 SASS6Q6UVJ0 657 aa8.77□□□□□ -1.01
SYNE1-213ENST00000448038 CCDC43Q96MW1 224 aaKnown RBP8.77□□□□□ -1.01
SYNE1-213ENST00000448038 GLI2P10070 1586 aa8.77□□□□□ -1.01
SYNE1-213ENST00000448038 FIBPO43427 364 aa8.77□□□□□ -1.01
SYNE1-213ENST00000448038 ABCA6Q8N139 1617 aa8.77□□□□□ -1.01
SYNE1-213ENST00000448038 CEBPZQ03701 1054 aaKnown RBP8.77□□□□□ -1.01
SYNE1-213ENST00000448038 DNAJC10Q8IXB1 793 aa8.77□□□□□ -1.01
SYNE1-213ENST00000448038 PPRC1Q5VV67 1664 aaKnown RBP8.76□□□□□ -1.01
SYNE1-213ENST00000448038 CDKL5O76039 1030 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 ZNF396Q96N95 335 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-213ENST00000448038 SDF4Q9BRK5 362 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 METTL22Q9BUU2 404 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-213ENST00000448038 DCTPP1Q9H773 170 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 USP19O94966 1318 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 WDR33Q9C0J8 1336 aaKnown RBP8.76□□□□□ -1.01
SYNE1-213ENST00000448038 ZNF213O14771 459 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 ZBTB7BO15156 539 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-213ENST00000448038 TRAPPC3LQ5T215 181 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 BICC1Q9H694 974 aaKnown RBP8.76□□□□□ -1.01
SYNE1-213ENST00000448038 ZNF287Q9HBT7 754 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 ANKARQ7Z5J8 1434 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 SLF2Q8IX21 1173 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 C16orf71Q8IYS4 520 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-213ENST00000448038 MKNK2Q9HBH9 465 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 PRPF40AO75400 957 aaKnown RBP8.76□□□□□ -1.01
SYNE1-213ENST00000448038 SDSP20132 328 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 STK38Q15208 465 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 PLEKHF1Q96S99 279 aa8.76□□□□□ -1.01
SYNE1-213ENST00000448038 TPM2P07951 284 aa8.75□□□□□ -1.01
SYNE1-213ENST00000448038 KIDINS220Q9ULH0 1771 aa8.75□□□□□ -1.01
SYNE1-213ENST00000448038 KCNQ3O43525 872 aa8.75□□□□□ -1.01
SYNE1-213ENST00000448038 BRINP3Q76B58 766 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms