RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 A1BGP04217 495 aa19.49■□□□□ 0.71
HMGN1-208ENST00000443046 SOGA3Q5TF21 947 aa19.49■□□□□ 0.71
HMGN1-208ENST00000443046 MASTLQ96GX5 879 aa19.49■□□□□ 0.71
HMGN1-208ENST00000443046 CEMIPQ8WUJ3 1361 aa19.48■□□□□ 0.71
HMGN1-208ENST00000443046 FOXN1O15353 648 aa19.48■□□□□ 0.71
HMGN1-208ENST00000443046 TEFQ10587 303 aa19.48■□□□□ 0.71
HMGN1-208ENST00000443046 LDHDQ86WU2 507 aa19.48■□□□□ 0.71
HMGN1-208ENST00000443046 IQCA1LA6NCM1 817 aa19.47■□□□□ 0.71
HMGN1-208ENST00000443046 ITGBL1O95965 494 aaPredicted RBP19.47■□□□□ 0.71
HMGN1-208ENST00000443046 GAS2L2Q8NHY3 880 aa19.47■□□□□ 0.71
HMGN1-208ENST00000443046 FMNL2Q96PY5 1086 aa19.47■□□□□ 0.71
HMGN1-208ENST00000443046 TAF1DQ9H5J8 278 aaPredicted RBP19.47■□□□□ 0.71
HMGN1-208ENST00000443046 PRDM10Q9NQV6 1147 aa19.47■□□□□ 0.71
HMGN1-208ENST00000443046 KLRG2A4D1S0 409 aaPredicted RBP19.46■□□□□ 0.71
HMGN1-208ENST00000443046 ST5P78524 1137 aa19.46■□□□□ 0.71
HMGN1-208ENST00000443046 ZNF330Q9Y3S2 320 aaPredicted RBP19.46■□□□□ 0.71
HMGN1-208ENST00000443046 KIF7Q2M1P5 1343 aa19.46■□□□□ 0.71
HMGN1-208ENST00000443046 ADAMTSL1Q8N6G6 1762 aa19.45■□□□□ 0.7
HMGN1-208ENST00000443046 CLEC4GQ6UXB4 293 aa19.45■□□□□ 0.7
HMGN1-208ENST00000443046 KCNQ3O43525 872 aa19.44■□□□□ 0.7
HMGN1-208ENST00000443046 DZIP3Q86Y13 1208 aaKnown RBP19.44■□□□□ 0.7
HMGN1-208ENST00000443046 TMEM88BA6NKF7 163 aa19.43■□□□□ 0.7
HMGN1-208ENST00000443046 VEGFBP49765 207 aa19.43■□□□□ 0.7
HMGN1-208ENST00000443046 PCGF6Q9BYE7 350 aa19.43■□□□□ 0.7
HMGN1-208ENST00000443046 USP16Q9Y5T5 823 aa19.43■□□□□ 0.7
HMGN1-208ENST00000443046 CCDC93Q567U6 631 aa19.42■□□□□ 0.7
HMGN1-208ENST00000443046 WBP1LQ9NX94 342 aa19.42■□□□□ 0.7
HMGN1-208ENST00000443046 RGL2O15211 777 aa19.41■□□□□ 0.7
HMGN1-208ENST00000443046 NPR1P16066 1061 aa19.41■□□□□ 0.7
HMGN1-208ENST00000443046 CTCFP49711 727 aaPredicted RBP19.41■□□□□ 0.7
HMGN1-208ENST00000443046 FKBP4Q02790 459 aaKnown RBP eCLIP19.41■□□□□ 0.7
HMGN1-208ENST00000443046 CC2D1BQ5T0F9 858 aaKnown RBP19.41■□□□□ 0.7
HMGN1-208ENST00000443046 NPM2Q86SE8 214 aaKnown RBP19.41■□□□□ 0.7
HMGN1-208ENST00000443046 NBPF5PQ86XG9 351 aaPredicted RBP19.41■□□□□ 0.7
HMGN1-208ENST00000443046 ZNF541Q9H0D2 1346 aa19.41■□□□□ 0.7
HMGN1-208ENST00000443046 NPC1L1Q9UHC9 1359 aa19.41■□□□□ 0.7
HMGN1-208ENST00000443046 BTBD11A6QL63 1104 aa19.4■□□□□ 0.7
HMGN1-208ENST00000443046 NPHP1O15259 732 aa19.4■□□□□ 0.7
HMGN1-208ENST00000443046 PHACTR3Q96KR7 559 aa19.4■□□□□ 0.7
HMGN1-208ENST00000443046 FZD9O00144 591 aa19.39■□□□□ 0.69
HMGN1-208ENST00000443046 U2SURPO15042 1029 aaKnown RBP19.39■□□□□ 0.69
HMGN1-208ENST00000443046 ZNF277Q9NRM2 450 aaPredicted RBP19.39■□□□□ 0.69
HMGN1-208ENST00000443046 HACL1Q9UJ83 578 aa19.39■□□□□ 0.69
HMGN1-208ENST00000443046 PRAMEF22A3QJZ6 481 aa19.38■□□□□ 0.69
HMGN1-208ENST00000443046 RASSF10A6NK89 507 aa19.38■□□□□ 0.69
HMGN1-208ENST00000443046 PIP4K2AP48426 406 aaPredicted RBP19.38■□□□□ 0.69
HMGN1-208ENST00000443046 OLFM4Q6UX06 510 aa19.38■□□□□ 0.69
HMGN1-208ENST00000443046 RTKN2Q8IZC4 609 aa19.38■□□□□ 0.69
HMGN1-208ENST00000443046 SNED1Q8TER0 1413 aa19.38■□□□□ 0.69
HMGN1-208ENST00000443046 EPHX2P34913 555 aa19.37■□□□□ 0.69
HMGN1-208ENST00000443046 TPTE2Q6XPS3 522 aa19.37■□□□□ 0.69
HMGN1-208ENST00000443046 NBPF26B4DH59 902 aa19.36■□□□□ 0.69
HMGN1-208ENST00000443046 EAPPQ56P03 285 aaPredicted RBP19.36■□□□□ 0.69
HMGN1-208ENST00000443046 NBPF10Q6P3W6 841 aaKnown RBP19.36■□□□□ 0.69
HMGN1-208ENST00000443046 PNMA8AQ86V59 439 aaPredicted RBP19.36■□□□□ 0.69
HMGN1-208ENST00000443046 NBPF15Q8N660 670 aa19.36■□□□□ 0.69
HMGN1-208ENST00000443046 AIDAQ96BJ3 306 aa19.36■□□□□ 0.69
HMGN1-208ENST00000443046 RSPH6AQ9H0K4 717 aa19.36■□□□□ 0.69
HMGN1-208ENST00000443046 ZNF652Q9Y2D9 606 aa19.36■□□□□ 0.69
HMGN1-208ENST00000443046 SNRPA1P09661 255 aaKnown RBP19.35■□□□□ 0.69
HMGN1-208ENST00000443046 CNTROBQ8N137 903 aa19.35■□□□□ 0.69
HMGN1-208ENST00000443046 IARSP41252 1262 aaKnown RBP19.34■□□□□ 0.69
HMGN1-208ENST00000443046 LBX1P52954 281 aa19.34■□□□□ 0.69
HMGN1-208ENST00000443046 DEFB115Q30KQ5 88 aa19.34■□□□□ 0.69
HMGN1-208ENST00000443046 GPC2Q8N158 579 aa19.34■□□□□ 0.69
HMGN1-208ENST00000443046 NIP7Q9Y221 180 aaKnown RBP eCLIP19.34■□□□□ 0.69
HMGN1-208ENST00000443046 RNF123Q5XPI4 1314 aa19.33■□□□□ 0.69
HMGN1-208ENST00000443046 HSPA8P11142 646 aaKnown RBP19.33■□□□□ 0.68
HMGN1-208ENST00000443046 ALDH1B1P30837 517 aa19.33■□□□□ 0.68
HMGN1-208ENST00000443046 PRKAR2BP31323 418 aa19.33■□□□□ 0.68
HMGN1-208ENST00000443046 MAP1SQ66K74 1059 aaPredicted RBP19.33■□□□□ 0.68
HMGN1-208ENST00000443046 SYNE4Q8N205 404 aa19.33■□□□□ 0.68
HMGN1-208ENST00000443046 PSMD1Q99460 953 aa19.33■□□□□ 0.68
HMGN1-208ENST00000443046 CLEC11AQ9Y240 323 aa19.33■□□□□ 0.68
HMGN1-208ENST00000443046 CRY2Q49AN0 593 aa19.32■□□□□ 0.68
HMGN1-208ENST00000443046 WDR33Q9C0J8 1336 aaKnown RBP19.31■□□□□ 0.68
HMGN1-208ENST00000443046 COL4A5P29400 1685 aa19.31■□□□□ 0.68
HMGN1-208ENST00000443046 HLFQ16534 295 aa19.31■□□□□ 0.68
HMGN1-208ENST00000443046 LTBP1Q14766 1721 aa19.31■□□□□ 0.68
HMGN1-208ENST00000443046 MAP2K1Q02750 393 aaPredicted RBP19.3■□□□□ 0.68
HMGN1-208ENST00000443046 THSD7BQ9C0I4 1608 aa19.29■□□□□ 0.68
HMGN1-208ENST00000443046 MCM10Q7L590 875 aa19.29■□□□□ 0.68
HMGN1-208ENST00000443046 DDX21Q9NR30 783 aaKnown RBP eCLIP19.29■□□□□ 0.68
HMGN1-208ENST00000443046 ABHD8Q96I13 439 aa19.28■□□□□ 0.68
HMGN1-208ENST00000443046 FAM177BA6PVY3 158 aa19.27■□□□□ 0.68
HMGN1-208ENST00000443046 HTATSF1O43719 755 aaKnown RBP19.27■□□□□ 0.68
HMGN1-208ENST00000443046 HOXA10P31260 410 aaPredicted RBP19.27■□□□□ 0.68
HMGN1-208ENST00000443046 CC2D2BQ6DHV5 1058 aa19.27■□□□□ 0.68
HMGN1-208ENST00000443046 JDP2Q8WYK2 163 aa19.27■□□□□ 0.68
HMGN1-208ENST00000443046 ABCC12Q96J65 1359 aa19.27■□□□□ 0.68
HMGN1-208ENST00000443046 NUP98P52948 1817 aa19.26■□□□□ 0.67
HMGN1-208ENST00000443046 SLC34A2O95436 690 aa19.26■□□□□ 0.67
HMGN1-208ENST00000443046 SCNN1DP51172 638 aa19.26■□□□□ 0.67
HMGN1-208ENST00000443046 RTF1Q92541 710 aaKnown RBP19.26■□□□□ 0.67
HMGN1-208ENST00000443046 RIC1Q4ADV7 1423 aa19.25■□□□□ 0.67
HMGN1-208ENST00000443046 LAMB4A4D0S4 1761 aa19.25■□□□□ 0.67
HMGN1-208ENST00000443046 ERVV-1B6SEH8 477 aa19.25■□□□□ 0.67
HMGN1-208ENST00000443046 DCTN1Q14203 1278 aa19.25■□□□□ 0.67
HMGN1-208ENST00000443046 GRIPAP1Q4V328 841 aa19.25■□□□□ 0.67
HMGN1-208ENST00000443046 NYXQ9GZU5 481 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms