RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 NPHP1O15259 732 aa13.47□□□□□ -0.25
SMPD4-208ENST00000439029 SLC24A1O60721 1099 aa13.47□□□□□ -0.25
SMPD4-208ENST00000439029 CNKSR1Q969H4 720 aa13.47□□□□□ -0.25
SMPD4-208ENST00000439029 LGR6Q9HBX8 967 aa13.47□□□□□ -0.25
SMPD4-208ENST00000439029 ADAMTSL1Q8N6G6 1762 aa13.46□□□□□ -0.25
SMPD4-208ENST00000439029 TRAF5O00463 557 aa13.46□□□□□ -0.25
SMPD4-208ENST00000439029 ECE1P42892 770 aa13.46□□□□□ -0.25
SMPD4-208ENST00000439029 SOX10P56693 466 aa13.46□□□□□ -0.25
SMPD4-208ENST00000439029 PNMA8AQ86V59 439 aaPredicted RBP13.46□□□□□ -0.25
SMPD4-208ENST00000439029 TBC1D2BQ9UPU7 963 aa13.46□□□□□ -0.25
SMPD4-208ENST00000439029 STYK1Q6J9G0 422 aa13.45□□□□□ -0.26
SMPD4-208ENST00000439029 SLC52A2Q9HAB3 445 aa13.45□□□□□ -0.26
SMPD4-208ENST00000439029 SRGNP10124 158 aa13.44□□□□□ -0.26
SMPD4-208ENST00000439029 SULT6B1Q6IMI4 303 aa13.44□□□□□ -0.26
SMPD4-208ENST00000439029 CNBD1Q8NA66 436 aa13.44□□□□□ -0.26
SMPD4-208ENST00000439029 PDZRN3Q9UPQ7 1066 aa13.44□□□□□ -0.26
SMPD4-208ENST00000439029 GJA3Q9Y6H8 435 aa13.44□□□□□ -0.26
SMPD4-208ENST00000439029 EIF5P55010 431 aaKnown RBP13.43□□□□□ -0.26
SMPD4-208ENST00000439029 LTBP1Q14766 1721 aa13.43□□□□□ -0.26
SMPD4-208ENST00000439029 CCDC93Q567U6 631 aa13.43□□□□□ -0.26
SMPD4-208ENST00000439029 SOGA3Q5TF21 947 aa13.43□□□□□ -0.26
SMPD4-208ENST00000439029 CST9Q5W186 159 aa13.43□□□□□ -0.26
SMPD4-208ENST00000439029 C7orf43Q8WVR3 580 aa13.43□□□□□ -0.26
SMPD4-208ENST00000439029 MASTLQ96GX5 879 aa13.43□□□□□ -0.26
SMPD4-208ENST00000439029 THSD7BQ9C0I4 1608 aa13.42□□□□□ -0.26
SMPD4-208ENST00000439029 FKBP4Q02790 459 aaKnown RBP eCLIP13.42□□□□□ -0.26
SMPD4-208ENST00000439029 SCN11AQ9UI33 1791 aa13.42□□□□□ -0.26
SMPD4-208ENST00000439029 A0A087WZG4 1122 aa13.41□□□□□ -0.26
SMPD4-208ENST00000439029 TNRC18O15417 2968 aaPredicted RBP13.41□□□□□ -0.26
SMPD4-208ENST00000439029 ST5P78524 1137 aa13.41□□□□□ -0.26
SMPD4-208ENST00000439029 CDCA8Q53HL2 280 aa13.41□□□□□ -0.26
SMPD4-208ENST00000439029 SETDB2Q96T68 719 aa13.41□□□□□ -0.26
SMPD4-208ENST00000439029 POLR3GLQ9BT43 218 aa13.41□□□□□ -0.26
SMPD4-208ENST00000439029 RNMTO43148 476 aaKnown RBP13.4□□□□□ -0.26
SMPD4-208ENST00000439029 IARSP41252 1262 aaKnown RBP13.4□□□□□ -0.26
SMPD4-208ENST00000439029 EPS15P42566 896 aa13.4□□□□□ -0.26
SMPD4-208ENST00000439029 SYNE4Q8N205 404 aa13.4□□□□□ -0.26
SMPD4-208ENST00000439029 TLL2Q9Y6L7 1015 aa13.4□□□□□ -0.26
SMPD4-208ENST00000439029 FZD9O00144 591 aa13.39□□□□□ -0.27
SMPD4-208ENST00000439029 MAP2K2P36507 400 aa13.39□□□□□ -0.27
SMPD4-208ENST00000439029 AKAP4Q5JQC9 854 aa13.39□□□□□ -0.27
SMPD4-208ENST00000439029 CIAPIN1Q6FI81 312 aa13.39□□□□□ -0.27
SMPD4-208ENST00000439029 GPC2Q8N158 579 aa13.39□□□□□ -0.27
SMPD4-208ENST00000439029 STARD3NLO95772 234 aa13.38□□□□□ -0.27
SMPD4-208ENST00000439029 LMOD1P29536 600 aaPredicted RBP13.38□□□□□ -0.27
SMPD4-208ENST00000439029 PRPF38BQ5VTL8 546 aaKnown RBP13.38□□□□□ -0.27
SMPD4-208ENST00000439029 ZIC5Q96T25 663 aa13.38□□□□□ -0.27
SMPD4-208ENST00000439029 FAM177BA6PVY3 158 aa13.37□□□□□ -0.27
SMPD4-208ENST00000439029 CELF2O95319 508 aaKnown RBP13.37□□□□□ -0.27
SMPD4-208ENST00000439029 VSIG10Q8N0Z9 540 aa13.37□□□□□ -0.27
SMPD4-208ENST00000439029 ZNF408Q9H9D4 720 aa13.37□□□□□ -0.27
SMPD4-208ENST00000439029 ARFGEF2Q9Y6D5 1785 aa13.37□□□□□ -0.27
SMPD4-208ENST00000439029 TRPM7Q96QT4 1865 aa13.36□□□□□ -0.27
SMPD4-208ENST00000439029 CA12O43570 354 aa13.36□□□□□ -0.27
SMPD4-208ENST00000439029 CAMTA2O94983 1202 aa13.36□□□□□ -0.27
SMPD4-208ENST00000439029 A1BGP04217 495 aa13.36□□□□□ -0.27
SMPD4-208ENST00000439029 NPR1P16066 1061 aa13.36□□□□□ -0.27
SMPD4-208ENST00000439029 PIP4K2AP48426 406 aaPredicted RBP13.36□□□□□ -0.27
SMPD4-208ENST00000439029 SCNN1DP51172 638 aa13.36□□□□□ -0.27
SMPD4-208ENST00000439029 EIF6P56537 245 aaKnown RBP13.36□□□□□ -0.27
SMPD4-208ENST00000439029 SAPCD2Q86UD0 394 aa13.36□□□□□ -0.27
SMPD4-208ENST00000439029 NBPF5PQ86XG9 351 aaPredicted RBP13.36□□□□□ -0.27
SMPD4-208ENST00000439029 RTKN2Q8IZC4 609 aa13.36□□□□□ -0.27
SMPD4-208ENST00000439029 JDP2Q8WYK2 163 aa13.36□□□□□ -0.27
SMPD4-208ENST00000439029 SCN7AQ01118 1682 aa13.36□□□□□ -0.27
SMPD4-208ENST00000439029 SLC51AQ86UW1 340 aa13.35□□□□□ -0.27
SMPD4-208ENST00000439029 TTC5Q8N0Z6 440 aa13.35□□□□□ -0.27
SMPD4-208ENST00000439029 ZNF496Q96IT1 587 aaPredicted RBP13.35□□□□□ -0.27
SMPD4-208ENST00000439029 GLIS2Q9BZE0 524 aaPredicted RBP13.35□□□□□ -0.27
SMPD4-208ENST00000439029 COL4A5P29400 1685 aa13.34□□□□□ -0.27
SMPD4-208ENST00000439029 HMOX1P09601 288 aa13.34□□□□□ -0.27
SMPD4-208ENST00000439029 BRPF1P55201 1214 aaPredicted RBP13.34□□□□□ -0.27
SMPD4-208ENST00000439029 MRC1P22897 1456 aa13.34□□□□□ -0.27
SMPD4-208ENST00000439029 IL13P35225 146 aa13.33□□□□□ -0.28
SMPD4-208ENST00000439029 IL6STP40189 918 aaPredicted RBP13.33□□□□□ -0.28
SMPD4-208ENST00000439029 NPM2Q86SE8 214 aaKnown RBP13.33□□□□□ -0.28
SMPD4-208ENST00000439029 DZIP3Q86Y13 1208 aaKnown RBP13.33□□□□□ -0.28
SMPD4-208ENST00000439029 MTHFSDQ2M296 383 aaKnown RBP13.32□□□□□ -0.28
SMPD4-208ENST00000439029 USP50Q70EL3 339 aaPredicted RBP13.32□□□□□ -0.28
SMPD4-208ENST00000439029 TCERG1O14776 1098 aaKnown RBP13.31□□□□□ -0.28
SMPD4-208ENST00000439029 DLK2Q6UY11 383 aa13.31□□□□□ -0.28
SMPD4-208ENST00000439029 LARGE2Q8N3Y3 721 aa13.31□□□□□ -0.28
SMPD4-208ENST00000439029 HEG1Q9ULI3 1381 aa13.31□□□□□ -0.28
SMPD4-208ENST00000439029 UBR2Q8IWV8 1755 aa13.3□□□□□ -0.28
SMPD4-208ENST00000439029 MORC1Q86VD1 984 aa13.3□□□□□ -0.28
SMPD4-208ENST00000439029 KLRG2A4D1S0 409 aaPredicted RBP13.29□□□□□ -0.28
SMPD4-208ENST00000439029 PSMD1Q99460 953 aa13.29□□□□□ -0.28
SMPD4-208ENST00000439029 KCNQ3O43525 872 aa13.28□□□□□ -0.28
SMPD4-208ENST00000439029 ALDH1B1P30837 517 aa13.28□□□□□ -0.28
SMPD4-208ENST00000439029 ZNF790Q6PG37 636 aa13.28□□□□□ -0.28
SMPD4-208ENST00000439029 TPTE2Q6XPS3 522 aa13.28□□□□□ -0.28
SMPD4-208ENST00000439029 GPRC5DQ9NZD1 345 aa13.28□□□□□ -0.28
SMPD4-208ENST00000439029 NIP7Q9Y221 180 aaKnown RBP eCLIP13.28□□□□□ -0.28
SMPD4-208ENST00000439029 TRPA1O75762 1119 aa13.27□□□□□ -0.29
SMPD4-208ENST00000439029 GTF2E1P29083 439 aaPredicted RBP13.27□□□□□ -0.29
SMPD4-208ENST00000439029 HUNKP57058 714 aa13.27□□□□□ -0.29
SMPD4-208ENST00000439029 NOGQ13253 232 aa13.27□□□□□ -0.29
SMPD4-208ENST00000439029 TEX13AQ9BXU3 409 aaPredicted RBP13.27□□□□□ -0.29
SMPD4-208ENST00000439029 PANK3Q9H999 370 aa13.27□□□□□ -0.29
SMPD4-208ENST00000439029 ADARB2Q9NS39 739 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms