RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 TAF1DQ9H5J8 278 aaPredicted RBP22.64■■□□□ 1.22
CHCHD3-202ENST00000423635 ZNF330Q9Y3S2 320 aaPredicted RBP22.64■■□□□ 1.22
CHCHD3-202ENST00000423635 GNAT3A8MTJ3 354 aa22.63■■□□□ 1.21
CHCHD3-202ENST00000423635 ITGBL1O95965 494 aaPredicted RBP22.63■■□□□ 1.21
CHCHD3-202ENST00000423635 A1BGP04217 495 aa22.63■■□□□ 1.21
CHCHD3-202ENST00000423635 NPM2Q86SE8 214 aaKnown RBP22.62■■□□□ 1.21
CHCHD3-202ENST00000423635 FMNL2Q96PY5 1086 aa22.62■■□□□ 1.21
CHCHD3-202ENST00000423635 TMEM88BA6NKF7 163 aa22.61■■□□□ 1.21
CHCHD3-202ENST00000423635 GAS2L2Q8NHY3 880 aa22.61■■□□□ 1.21
CHCHD3-202ENST00000423635 SCN4AP35499 1836 aa22.61■■□□□ 1.21
CHCHD3-202ENST00000423635 NPHP1O15259 732 aa22.6■■□□□ 1.21
CHCHD3-202ENST00000423635 PER1O15534 1290 aaPredicted RBP22.6■■□□□ 1.21
CHCHD3-202ENST00000423635 CTCFP49711 727 aaPredicted RBP22.6■■□□□ 1.21
CHCHD3-202ENST00000423635 VEGFBP49765 207 aa22.6■■□□□ 1.21
CHCHD3-202ENST00000423635 CLEC4GQ6UXB4 293 aa22.6■■□□□ 1.21
CHCHD3-202ENST00000423635 KLRG2A4D1S0 409 aaPredicted RBP22.59■■□□□ 1.21
CHCHD3-202ENST00000423635 CCDC93Q567U6 631 aa22.59■■□□□ 1.21
CHCHD3-202ENST00000423635 DZIP3Q86Y13 1208 aaKnown RBP22.59■■□□□ 1.21
CHCHD3-202ENST00000423635 WBP1LQ9NX94 342 aa22.59■■□□□ 1.21
CHCHD3-202ENST00000423635 AIDAQ96BJ3 306 aa22.58■■□□□ 1.21
CHCHD3-202ENST00000423635 ARFGEF2Q9Y6D5 1785 aa22.58■■□□□ 1.21
CHCHD3-202ENST00000423635 NPR1P16066 1061 aa22.57■■□□□ 1.2
CHCHD3-202ENST00000423635 FKBP4Q02790 459 aaKnown RBP eCLIP22.57■■□□□ 1.2
CHCHD3-202ENST00000423635 CEMIPQ8WUJ3 1361 aa22.57■■□□□ 1.2
CHCHD3-202ENST00000423635 SIPA1L3O60292 1781 aaPredicted RBP22.57■■□□□ 1.2
CHCHD3-202ENST00000423635 HACL1Q9UJ83 578 aa22.57■■□□□ 1.2
CHCHD3-202ENST00000423635 USP16Q9Y5T5 823 aa22.57■■□□□ 1.2
CHCHD3-202ENST00000423635 KCNQ3O43525 872 aa22.56■■□□□ 1.2
CHCHD3-202ENST00000423635 NBPF5PQ86XG9 351 aaPredicted RBP22.56■■□□□ 1.2
CHCHD3-202ENST00000423635 BTBD11A6QL63 1104 aa22.55■■□□□ 1.2
CHCHD3-202ENST00000423635 PNMA8AQ86V59 439 aaPredicted RBP22.55■■□□□ 1.2
CHCHD3-202ENST00000423635 RTKN2Q8IZC4 609 aa22.55■■□□□ 1.2
CHCHD3-202ENST00000423635 CACNA1SQ13698 1873 aa22.54■■□□□ 1.2
CHCHD3-202ENST00000423635 ZNF541Q9H0D2 1346 aa22.54■■□□□ 1.2
CHCHD3-202ENST00000423635 RASSF10A6NK89 507 aa22.54■■□□□ 1.2
CHCHD3-202ENST00000423635 RGL2O15211 777 aa22.54■■□□□ 1.2
CHCHD3-202ENST00000423635 EPHX2P34913 555 aa22.54■■□□□ 1.2
CHCHD3-202ENST00000423635 EAPPQ56P03 285 aaPredicted RBP22.54■■□□□ 1.2
CHCHD3-202ENST00000423635 CC2D1BQ5T0F9 858 aaKnown RBP22.54■■□□□ 1.2
CHCHD3-202ENST00000423635 TPTE2Q6XPS3 522 aa22.54■■□□□ 1.2
CHCHD3-202ENST00000423635 PCGF6Q9BYE7 350 aa22.54■■□□□ 1.2
CHCHD3-202ENST00000423635 ZNF277Q9NRM2 450 aaPredicted RBP22.54■■□□□ 1.2
CHCHD3-202ENST00000423635 BCORQ6W2J9 1755 aa22.53■■□□□ 1.2
CHCHD3-202ENST00000423635 KIF7Q2M1P5 1343 aa22.53■■□□□ 1.2
CHCHD3-202ENST00000423635 FZD9O00144 591 aa22.53■■□□□ 1.2
CHCHD3-202ENST00000423635 U2SURPO15042 1029 aaKnown RBP22.53■■□□□ 1.2
CHCHD3-202ENST00000423635 LBX1P52954 281 aa22.53■■□□□ 1.2
CHCHD3-202ENST00000423635 DEFB115Q30KQ5 88 aa22.53■■□□□ 1.2
CHCHD3-202ENST00000423635 CLEC11AQ9Y240 323 aa22.53■■□□□ 1.2
CHCHD3-202ENST00000423635 ZNF652Q9Y2D9 606 aa22.53■■□□□ 1.2
CHCHD3-202ENST00000423635 COL3A1P02461 1466 aaPredicted RBP22.52■■□□□ 1.2
CHCHD3-202ENST00000423635 CNTROBQ8N137 903 aa22.52■■□□□ 1.2
CHCHD3-202ENST00000423635 ADAMTSL1Q8N6G6 1762 aa22.51■■□□□ 1.19
CHCHD3-202ENST00000423635 PIP4K2AP48426 406 aaPredicted RBP22.51■■□□□ 1.19
CHCHD3-202ENST00000423635 ALDH1B1P30837 517 aa22.5■■□□□ 1.19
CHCHD3-202ENST00000423635 OLFM4Q6UX06 510 aa22.5■■□□□ 1.19
CHCHD3-202ENST00000423635 PHACTR3Q96KR7 559 aa22.5■■□□□ 1.19
CHCHD3-202ENST00000423635 PRAMEF22A3QJZ6 481 aa22.49■■□□□ 1.19
CHCHD3-202ENST00000423635 SNRPA1P09661 255 aaKnown RBP22.49■■□□□ 1.19
CHCHD3-202ENST00000423635 IARSP41252 1262 aaKnown RBP22.49■■□□□ 1.19
CHCHD3-202ENST00000423635 MAP2K1Q02750 393 aaPredicted RBP22.49■■□□□ 1.19
CHCHD3-202ENST00000423635 GPC2Q8N158 579 aa22.49■■□□□ 1.19
CHCHD3-202ENST00000423635 SYNE4Q8N205 404 aa22.49■■□□□ 1.19
CHCHD3-202ENST00000423635 HSPA8P11142 646 aaKnown RBP22.48■■□□□ 1.19
CHCHD3-202ENST00000423635 MAP1SQ66K74 1059 aaPredicted RBP22.48■■□□□ 1.19
CHCHD3-202ENST00000423635 NIP7Q9Y221 180 aaKnown RBP eCLIP22.48■■□□□ 1.19
CHCHD3-202ENST00000423635 NPC1L1Q9UHC9 1359 aa22.48■■□□□ 1.19
CHCHD3-202ENST00000423635 RNF123Q5XPI4 1314 aa22.47■■□□□ 1.19
CHCHD3-202ENST00000423635 WDR33Q9C0J8 1336 aaKnown RBP22.47■■□□□ 1.19
CHCHD3-202ENST00000423635 PSMD1Q99460 953 aa22.47■■□□□ 1.19
CHCHD3-202ENST00000423635 NBPF26B4DH59 902 aa22.46■■□□□ 1.19
CHCHD3-202ENST00000423635 NBPF10Q6P3W6 841 aaKnown RBP22.46■■□□□ 1.19
CHCHD3-202ENST00000423635 NBPF15Q8N660 670 aa22.46■■□□□ 1.19
CHCHD3-202ENST00000423635 ABHD8Q96I13 439 aa22.45■■□□□ 1.18
CHCHD3-202ENST00000423635 RSPH6AQ9H0K4 717 aa22.45■■□□□ 1.18
CHCHD3-202ENST00000423635 SNED1Q8TER0 1413 aa22.45■■□□□ 1.18
CHCHD3-202ENST00000423635 PRKAR2BP31323 418 aa22.44■■□□□ 1.18
CHCHD3-202ENST00000423635 JDP2Q8WYK2 163 aa22.44■■□□□ 1.18
CHCHD3-202ENST00000423635 DDX21Q9NR30 783 aaKnown RBP eCLIP22.44■■□□□ 1.18
CHCHD3-202ENST00000423635 SLC34A2O95436 690 aa22.43■■□□□ 1.18
CHCHD3-202ENST00000423635 CRY2Q49AN0 593 aa22.43■■□□□ 1.18
CHCHD3-202ENST00000423635 CC2D2BQ6DHV5 1058 aa22.43■■□□□ 1.18
CHCHD3-202ENST00000423635 HLFQ16534 295 aa22.42■■□□□ 1.18
CHCHD3-202ENST00000423635 ABT1Q9ULW3 272 aaKnown RBP22.42■■□□□ 1.18
CHCHD3-202ENST00000423635 FAM177BA6PVY3 158 aa22.41■■□□□ 1.18
CHCHD3-202ENST00000423635 GTF2E1P29083 439 aaPredicted RBP22.4■■□□□ 1.18
CHCHD3-202ENST00000423635 EIF6P56537 245 aaKnown RBP22.4■■□□□ 1.18
CHCHD3-202ENST00000423635 RTF1Q92541 710 aaKnown RBP22.4■■□□□ 1.18
CHCHD3-202ENST00000423635 GRIPAP1Q4V328 841 aa22.39■■□□□ 1.18
CHCHD3-202ENST00000423635 MCM10Q7L590 875 aa22.39■■□□□ 1.18
CHCHD3-202ENST00000423635 HOXA10P31260 410 aaPredicted RBP22.38■■□□□ 1.17
CHCHD3-202ENST00000423635 NYXQ9GZU5 481 aa22.38■■□□□ 1.17
CHCHD3-202ENST00000423635 HTATSF1O43719 755 aaKnown RBP22.37■■□□□ 1.17
CHCHD3-202ENST00000423635 LMOD1P29536 600 aaPredicted RBP22.37■■□□□ 1.17
CHCHD3-202ENST00000423635 ECE1P42892 770 aa22.37■■□□□ 1.17
CHCHD3-202ENST00000423635 SCNN1DP51172 638 aa22.37■■□□□ 1.17
CHCHD3-202ENST00000423635 CAPNS2Q96L46 248 aa22.37■■□□□ 1.17
CHCHD3-202ENST00000423635 GJA3Q9Y6H8 435 aa22.37■■□□□ 1.17
CHCHD3-202ENST00000423635 ERVV-1B6SEH8 477 aa22.36■■□□□ 1.17
CHCHD3-202ENST00000423635 EPS15P42566 896 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms