RNA–Protein interactions for RNA: ENST00000417724.1

HLA-DPA1-241, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 305 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-241ENST00000417724 CC2D1BQ5T0F9 858 aaKnown RBP10.58□□□□□ -0.72
HLA-DPA1-241ENST00000417724 CLEC4GQ6UXB4 293 aa10.58□□□□□ -0.72
HLA-DPA1-241ENST00000417724 LDHDQ86WU2 507 aa10.58□□□□□ -0.72
HLA-DPA1-241ENST00000417724 DZIP3Q86Y13 1208 aaKnown RBP10.58□□□□□ -0.72
HLA-DPA1-241ENST00000417724 L3MBTL3Q96JM7 780 aaPredicted RBP10.58□□□□□ -0.72
HLA-DPA1-241ENST00000417724 SCN4AP35499 1836 aa10.58□□□□□ -0.72
HLA-DPA1-241ENST00000417724 COL11A2P13942 1736 aaPredicted RBP10.58□□□□□ -0.72
HLA-DPA1-241ENST00000417724 CACNA1SQ13698 1873 aa10.57□□□□□ -0.72
HLA-DPA1-241ENST00000417724 SCN7AQ01118 1682 aa10.57□□□□□ -0.72
HLA-DPA1-241ENST00000417724 PER1O15534 1290 aaPredicted RBP10.57□□□□□ -0.72
HLA-DPA1-241ENST00000417724 NPR1P16066 1061 aa10.57□□□□□ -0.72
HLA-DPA1-241ENST00000417724 NBPF5PQ86XG9 351 aaPredicted RBP10.57□□□□□ -0.72
HLA-DPA1-241ENST00000417724 C7orf43Q8WVR3 580 aa10.57□□□□□ -0.72
HLA-DPA1-241ENST00000417724 AIDAQ96BJ3 306 aa10.57□□□□□ -0.72
HLA-DPA1-241ENST00000417724 TAF1DQ9H5J8 278 aaPredicted RBP10.57□□□□□ -0.72
HLA-DPA1-241ENST00000417724 PRDM10Q9NQV6 1147 aa10.57□□□□□ -0.72
HLA-DPA1-241ENST00000417724 ZNF652Q9Y2D9 606 aa10.57□□□□□ -0.72
HLA-DPA1-241ENST00000417724 CNTNAP1P78357 1384 aa10.56□□□□□ -0.72
HLA-DPA1-241ENST00000417724 TMEM88BA6NKF7 163 aa10.56□□□□□ -0.72
HLA-DPA1-241ENST00000417724 BTBD11A6QL63 1104 aa10.56□□□□□ -0.72
HLA-DPA1-241ENST00000417724 FOXN1O15353 648 aa10.56□□□□□ -0.72
HLA-DPA1-241ENST00000417724 CTCFP49711 727 aaPredicted RBP10.56□□□□□ -0.72
HLA-DPA1-241ENST00000417724 CCDC93Q567U6 631 aa10.56□□□□□ -0.72
HLA-DPA1-241ENST00000417724 TPTE2Q6XPS3 522 aa10.56□□□□□ -0.72
HLA-DPA1-241ENST00000417724 RTKN2Q8IZC4 609 aa10.56□□□□□ -0.72
HLA-DPA1-241ENST00000417724 SIPA1L3O60292 1781 aaPredicted RBP10.56□□□□□ -0.72
HLA-DPA1-241ENST00000417724 KIF7Q2M1P5 1343 aa10.56□□□□□ -0.72
HLA-DPA1-241ENST00000417724 PASKQ96RG2 1323 aa10.56□□□□□ -0.72
HLA-DPA1-241ENST00000417724 ARFGEF2Q9Y6D5 1785 aa10.55□□□□□ -0.72
HLA-DPA1-241ENST00000417724 KLRG2A4D1S0 409 aaPredicted RBP10.55□□□□□ -0.72
HLA-DPA1-241ENST00000417724 ITGBL1O95965 494 aaPredicted RBP10.55□□□□□ -0.72
HLA-DPA1-241ENST00000417724 FKBP4Q02790 459 aaKnown RBP eCLIP10.55□□□□□ -0.72
HLA-DPA1-241ENST00000417724 EAPPQ56P03 285 aaPredicted RBP10.55□□□□□ -0.72
HLA-DPA1-241ENST00000417724 PNMA8AQ86V59 439 aaPredicted RBP10.55□□□□□ -0.72
HLA-DPA1-241ENST00000417724 HACL1Q9UJ83 578 aa10.55□□□□□ -0.72
HLA-DPA1-241ENST00000417724 CLEC11AQ9Y240 323 aa10.55□□□□□ -0.72
HLA-DPA1-241ENST00000417724 USP16Q9Y5T5 823 aa10.55□□□□□ -0.72
HLA-DPA1-241ENST00000417724 CEMIPQ8WUJ3 1361 aa10.54□□□□□ -0.72
HLA-DPA1-241ENST00000417724 RGL2O15211 777 aa10.54□□□□□ -0.72
HLA-DPA1-241ENST00000417724 KCNQ3O43525 872 aa10.54□□□□□ -0.72
HLA-DPA1-241ENST00000417724 SNRPA1P09661 255 aaKnown RBP10.54□□□□□ -0.72
HLA-DPA1-241ENST00000417724 ALDH1B1P30837 517 aa10.54□□□□□ -0.72
HLA-DPA1-241ENST00000417724 VEGFBP49765 207 aa10.54□□□□□ -0.72
HLA-DPA1-241ENST00000417724 ZNF277Q9NRM2 450 aaPredicted RBP10.54□□□□□ -0.72
HLA-DPA1-241ENST00000417724 BCORQ6W2J9 1755 aa10.53□□□□□ -0.72
HLA-DPA1-241ENST00000417724 GTF2E1P29083 439 aaPredicted RBP10.53□□□□□ -0.72
HLA-DPA1-241ENST00000417724 EPHX2P34913 555 aa10.53□□□□□ -0.72
HLA-DPA1-241ENST00000417724 PIP4K2AP48426 406 aaPredicted RBP10.53□□□□□ -0.72
HLA-DPA1-241ENST00000417724 DEFB115Q30KQ5 88 aa10.53□□□□□ -0.72
HLA-DPA1-241ENST00000417724 CCER1Q8TC90 406 aaPredicted RBP10.53□□□□□ -0.72
HLA-DPA1-241ENST00000417724 RTF1Q92541 710 aaKnown RBP10.53□□□□□ -0.72
HLA-DPA1-241ENST00000417724 PHACTR3Q96KR7 559 aa10.53□□□□□ -0.72
HLA-DPA1-241ENST00000417724 WBP1LQ9NX94 342 aa10.53□□□□□ -0.72
HLA-DPA1-241ENST00000417724 NIP7Q9Y221 180 aaKnown RBP eCLIP10.53□□□□□ -0.72
HLA-DPA1-241ENST00000417724 NPC1L1Q9UHC9 1359 aa10.52□□□□□ -0.72
HLA-DPA1-241ENST00000417724 PRKAR2BP31323 418 aa10.52□□□□□ -0.73
HLA-DPA1-241ENST00000417724 CNGB1Q14028 1251 aaPredicted RBP10.52□□□□□ -0.73
HLA-DPA1-241ENST00000417724 CNTROBQ8N137 903 aa10.52□□□□□ -0.73
HLA-DPA1-241ENST00000417724 GPC2Q8N158 579 aa10.52□□□□□ -0.73
HLA-DPA1-241ENST00000417724 SYNE4Q8N205 404 aa10.52□□□□□ -0.73
HLA-DPA1-241ENST00000417724 JDP2Q8WYK2 163 aa10.52□□□□□ -0.73
HLA-DPA1-241ENST00000417724 CFAP53Q96M91 514 aa10.52□□□□□ -0.73
HLA-DPA1-241ENST00000417724 ZNF541Q9H0D2 1346 aa10.52□□□□□ -0.73
HLA-DPA1-241ENST00000417724 COL3A1P02461 1466 aaPredicted RBP10.51□□□□□ -0.73
HLA-DPA1-241ENST00000417724 RASSF10A6NK89 507 aa10.51□□□□□ -0.73
HLA-DPA1-241ENST00000417724 FAM177BA6PVY3 158 aa10.51□□□□□ -0.73
HLA-DPA1-241ENST00000417724 FZD9O00144 591 aa10.51□□□□□ -0.73
HLA-DPA1-241ENST00000417724 IARSP41252 1262 aaKnown RBP10.51□□□□□ -0.73
HLA-DPA1-241ENST00000417724 LBX1P52954 281 aa10.51□□□□□ -0.73
HLA-DPA1-241ENST00000417724 MAP2K1Q02750 393 aaPredicted RBP10.51□□□□□ -0.73
HLA-DPA1-241ENST00000417724 NUDCQ9Y266 331 aa10.51□□□□□ -0.73
HLA-DPA1-241ENST00000417724 PRAMEF22A3QJZ6 481 aa10.5□□□□□ -0.73
HLA-DPA1-241ENST00000417724 NBPF26B4DH59 902 aa10.5□□□□□ -0.73
HLA-DPA1-241ENST00000417724 MAP1SQ66K74 1059 aaPredicted RBP10.5□□□□□ -0.73
HLA-DPA1-241ENST00000417724 CC2D2BQ6DHV5 1058 aa10.5□□□□□ -0.73
HLA-DPA1-241ENST00000417724 NBPF10Q6P3W6 841 aaKnown RBP10.5□□□□□ -0.73
HLA-DPA1-241ENST00000417724 OLFM4Q6UX06 510 aa10.5□□□□□ -0.73
HLA-DPA1-241ENST00000417724 NBPF15Q8N660 670 aa10.5□□□□□ -0.73
HLA-DPA1-241ENST00000417724 RSPH6AQ9H0K4 717 aa10.5□□□□□ -0.73
HLA-DPA1-241ENST00000417724 ABT1Q9ULW3 272 aaKnown RBP10.5□□□□□ -0.73
HLA-DPA1-241ENST00000417724 RNF123Q5XPI4 1314 aa10.5□□□□□ -0.73
HLA-DPA1-241ENST00000417724 HTATSF1O43719 755 aaKnown RBP10.49□□□□□ -0.73
HLA-DPA1-241ENST00000417724 EIF6P56537 245 aaKnown RBP10.49□□□□□ -0.73
HLA-DPA1-241ENST00000417724 GRIPAP1Q4V328 841 aa10.49□□□□□ -0.73
HLA-DPA1-241ENST00000417724 MCM10Q7L590 875 aa10.49□□□□□ -0.73
HLA-DPA1-241ENST00000417724 PSMD1Q99460 953 aa10.49□□□□□ -0.73
HLA-DPA1-241ENST00000417724 NYXQ9GZU5 481 aa10.49□□□□□ -0.73
HLA-DPA1-241ENST00000417724 WDR33Q9C0J8 1336 aaKnown RBP10.49□□□□□ -0.73
HLA-DPA1-241ENST00000417724 ADAMTSL1Q8N6G6 1762 aa10.48□□□□□ -0.73
HLA-DPA1-241ENST00000417724 U2AF1L5P0DN76 240 aaPredicted RBP10.48□□□□□ -0.73
HLA-DPA1-241ENST00000417724 LMOD1P29536 600 aaPredicted RBP10.48□□□□□ -0.73
HLA-DPA1-241ENST00000417724 U2AF1Q01081 240 aaKnown RBP eCLIP10.48□□□□□ -0.73
HLA-DPA1-241ENST00000417724 TAF7Q15545 349 aaPredicted RBP10.48□□□□□ -0.73
HLA-DPA1-241ENST00000417724 HLFQ16534 295 aa10.48□□□□□ -0.73
HLA-DPA1-241ENST00000417724 BEGAINQ9BUH8 593 aa10.48□□□□□ -0.73
HLA-DPA1-241ENST00000417724 DDX21Q9NR30 783 aaKnown RBP eCLIP10.48□□□□□ -0.73
HLA-DPA1-241ENST00000417724 GJA3Q9Y6H8 435 aa10.48□□□□□ -0.73
HLA-DPA1-241ENST00000417724 ERVV-1B6SEH8 477 aa10.47□□□□□ -0.73
HLA-DPA1-241ENST00000417724 HSPA8P11142 646 aaKnown RBP10.47□□□□□ -0.73
HLA-DPA1-241ENST00000417724 ECE1P42892 770 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms