RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 GNL3LQ9NVN8 582 aaKnown RBP13.28□□□□□ -0.28
PTPRF-204ENST00000412568 PDCP20941 246 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 SAFBQ15424 915 aaKnown RBP eCLIP13.28□□□□□ -0.28
PTPRF-204ENST00000412568 FAM89AQ96GI7 184 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 USP16Q9Y5T5 823 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 NDUFB9Q9Y6M9 179 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 ANKRD18BA2A2Z9 1011 aa13.27□□□□□ -0.28
PTPRF-204ENST00000412568 TPM4P67936 248 aa13.27□□□□□ -0.28
PTPRF-204ENST00000412568 SLC4A8Q2Y0W8 1093 aa13.27□□□□□ -0.28
PTPRF-204ENST00000412568 CLASP1Q7Z460 1538 aa13.27□□□□□ -0.29
PTPRF-204ENST00000412568 CCT2P78371 535 aaKnown RBP13.27□□□□□ -0.29
PTPRF-204ENST00000412568 ATP2B2Q01814 1243 aa13.27□□□□□ -0.29
PTPRF-204ENST00000412568 HSP90AB3PQ58FF7 597 aa13.27□□□□□ -0.29
PTPRF-204ENST00000412568 SASS6Q6UVJ0 657 aa13.27□□□□□ -0.29
PTPRF-204ENST00000412568 ZNF219Q9P2Y4 722 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-204ENST00000412568 WDR33Q9C0J8 1336 aaKnown RBP13.27□□□□□ -0.29
PTPRF-204ENST00000412568 TMEM94Q12767 1356 aa13.27□□□□□ -0.29
PTPRF-204ENST00000412568 PRAMEF22A3QJZ6 481 aa13.27□□□□□ -0.29
PTPRF-204ENST00000412568 EIF4A1P60842 406 aaKnown RBP13.27□□□□□ -0.29
PTPRF-204ENST00000412568 SART3Q15020 963 aaKnown RBP13.27□□□□□ -0.29
PTPRF-204ENST00000412568 PLEKHG1Q9ULL1 1385 aa13.26□□□□□ -0.29
PTPRF-204ENST00000412568 KIF1BO60333 1816 aa13.26□□□□□ -0.29
PTPRF-204ENST00000412568 NECAB1Q8N987 351 aa13.26□□□□□ -0.29
PTPRF-204ENST00000412568 EVI5LQ96CN4 794 aa13.26□□□□□ -0.29
PTPRF-204ENST00000412568 AKAP2Q9Y2D5 859 aa13.26□□□□□ -0.29
PTPRF-204ENST00000412568 TET3O43151 1660 aa13.26□□□□□ -0.29
PTPRF-204ENST00000412568 ALDH1L1O75891 902 aa13.26□□□□□ -0.29
PTPRF-204ENST00000412568 TIMM10P62072 90 aa13.26□□□□□ -0.29
PTPRF-204ENST00000412568 CPA1P15085 419 aa13.25□□□□□ -0.29
PTPRF-204ENST00000412568 ESYT1Q9BSJ8 1104 aa13.25□□□□□ -0.29
PTPRF-204ENST00000412568 CFAP74Q9C0B2 1584 aa13.25□□□□□ -0.29
PTPRF-204ENST00000412568 TOM1O60784 492 aa13.25□□□□□ -0.29
PTPRF-204ENST00000412568 TPD52L1Q16890 204 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-204ENST00000412568 NACAP1Q9BZK3 213 aa13.25□□□□□ -0.29
PTPRF-204ENST00000412568 A2ML1A8K2U0 1454 aa13.25□□□□□ -0.29
PTPRF-204ENST00000412568 ME1P48163 572 aa13.24□□□□□ -0.29
PTPRF-204ENST00000412568 ANKRD1Q15327 319 aa13.24□□□□□ -0.29
PTPRF-204ENST00000412568 ZNF652Q9Y2D9 606 aa13.24□□□□□ -0.29
PTPRF-204ENST00000412568 TFCP2Q12800 502 aa13.24□□□□□ -0.29
PTPRF-204ENST00000412568 ZNF594Q96JF6 807 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-204ENST00000412568 RNF17Q9BXT8 1623 aaKnown RBP13.24□□□□□ -0.29
PTPRF-204ENST00000412568 SOS1Q07889 1333 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-204ENST00000412568 TNNT3P45378 269 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-204ENST00000412568 STK38Q15208 465 aa13.24□□□□□ -0.29
PTPRF-204ENST00000412568 IMMTQ16891 758 aaKnown RBP13.24□□□□□ -0.29
PTPRF-204ENST00000412568 SLC52A2Q9HAB3 445 aa13.24□□□□□ -0.29
PTPRF-204ENST00000412568 ANKIB1Q9P2G1 1089 aa13.24□□□□□ -0.29
PTPRF-204ENST00000412568 TFIP11Q9UBB9 837 aaKnown RBP13.24□□□□□ -0.29
PTPRF-204ENST00000412568 PROSER3Q2NL68 480 aa13.23□□□□□ -0.29
PTPRF-204ENST00000412568 PRIM1P49642 420 aaKnown RBP13.23□□□□□ -0.29
PTPRF-204ENST00000412568 DNAJC10Q8IXB1 793 aa13.23□□□□□ -0.29
PTPRF-204ENST00000412568 TMX3Q96JJ7 454 aa13.23□□□□□ -0.29
PTPRF-204ENST00000412568 TEX13AQ9BXU3 409 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-204ENST00000412568 USP44Q9H0E7 712 aa13.23□□□□□ -0.29
PTPRF-204ENST00000412568 TRPM1Q7Z4N2 1603 aa13.23□□□□□ -0.29
PTPRF-204ENST00000412568 LMTK3Q96Q04 1460 aa13.23□□□□□ -0.29
PTPRF-204ENST00000412568 USP6P35125 1406 aa13.23□□□□□ -0.29
PTPRF-204ENST00000412568 SYCE3A1L190 88 aa13.23□□□□□ -0.29
PTPRF-204ENST00000412568 CCDC144CPQ8IYA2 1237 aa13.23□□□□□ -0.29
PTPRF-204ENST00000412568 CCDC24Q8N4L8 307 aa13.23□□□□□ -0.29
PTPRF-204ENST00000412568 U3KPZ7 1027 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-204ENST00000412568 SYNMO15061 1565 aa13.23□□□□□ -0.29
PTPRF-204ENST00000412568 KRT85P78386 507 aa13.22□□□□□ -0.29
PTPRF-204ENST00000412568 DZIP3Q86Y13 1208 aaKnown RBP13.22□□□□□ -0.29
PTPRF-204ENST00000412568 CTNNA3Q9UI47 895 aa13.22□□□□□ -0.29
PTPRF-204ENST00000412568 LIMCH1Q9UPQ0 1083 aa13.22□□□□□ -0.29
PTPRF-204ENST00000412568 NIP7Q9Y221 180 aaKnown RBP eCLIP13.22□□□□□ -0.299e-8■□□□□ 8.2
PTPRF-204ENST00000412568 R3HCC1Q9Y3T6 440 aaKnown RBP13.22□□□□□ -0.29
PTPRF-204ENST00000412568 NLRP1Q9C000 1473 aa13.22□□□□□ -0.29
PTPRF-204ENST00000412568 IKQ13123 557 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-204ENST00000412568 ZSCAN25Q6NSZ9 544 aa13.22□□□□□ -0.29
PTPRF-204ENST00000412568 ARHGEF25Q86VW2 580 aa13.22□□□□□ -0.29
PTPRF-204ENST00000412568 ZNF592Q92610 1267 aa13.22□□□□□ -0.29
PTPRF-204ENST00000412568 GIGYF1O75420 1035 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-204ENST00000412568 KRT32Q14532 448 aa13.22□□□□□ -0.29
PTPRF-204ENST00000412568 CAMK4Q16566 473 aa13.22□□□□□ -0.29
PTPRF-204ENST00000412568 ZGPATQ8N5A5 531 aaKnown RBP13.22□□□□□ -0.29
PTPRF-204ENST00000412568 SUCLG2Q96I99 432 aa13.22□□□□□ -0.29
PTPRF-204ENST00000412568 NAPBQ9H115 298 aa13.22□□□□□ -0.29
PTPRF-204ENST00000412568 WWC3Q9ULE0 1092 aa13.22□□□□□ -0.29
PTPRF-204ENST00000412568 MAP3K4Q9Y6R4 1608 aa13.21□□□□□ -0.29
PTPRF-204ENST00000412568 CCDC69A6NI79 296 aa13.21□□□□□ -0.29
PTPRF-204ENST00000412568 BAG4O95429 457 aaKnown RBP13.21□□□□□ -0.29
PTPRF-204ENST00000412568 CHST3Q7LGC8 479 aa13.21□□□□□ -0.29
PTPRF-204ENST00000412568 TSPY26PQ9H489 355 aa13.21□□□□□ -0.29
PTPRF-204ENST00000412568 UNC13BO14795 1591 aa13.21□□□□□ -0.29
PTPRF-204ENST00000412568 SETD1BQ9UPS6 1966 aaKnown RBP13.21□□□□□ -0.29
PTPRF-204ENST00000412568 ARHGAP31Q2M1Z3 1444 aa13.21□□□□□ -0.29
PTPRF-204ENST00000412568 RBM5P52756 815 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTPRF-204ENST00000412568 NCBP3Q53F19 620 aaKnown RBP13.21□□□□□ -0.29
PTPRF-204ENST00000412568 RBM8AQ9Y5S9 174 aaKnown RBP13.21□□□□□ -0.29
PTPRF-204ENST00000412568 KINO60870 393 aaKnown RBP13.21□□□□□ -0.3
PTPRF-204ENST00000412568 E9PCH4 1651 aa13.21□□□□□ -0.3
PTPRF-204ENST00000412568 EDC3Q96F86 508 aaKnown RBP13.21□□□□□ -0.3
PTPRF-204ENST00000412568 SPATA32Q96LK8 384 aa13.21□□□□□ -0.3
PTPRF-204ENST00000412568 ZSCAN31Q96LW9 406 aaPredicted RBP13.21□□□□□ -0.3
PTPRF-204ENST00000412568 UBAC1Q9BSL1 405 aa13.21□□□□□ -0.3
PTPRF-204ENST00000412568 ARAP3Q8WWN8 1544 aa13.2□□□□□ -0.3
PTPRF-204ENST00000412568 HCLS1P14317 486 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-204ENST00000412568 CHMLP26374 656 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms