RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 C4BP0C0L5 1744 aa26.45■■□□□ 1.82
TPM1-208ENST00000404484 SLC4A10Q6U841 1118 aa26.44■■□□□ 1.82
TPM1-208ENST00000404484 PHAXQ9H814 394 aaKnown RBP26.44■■□□□ 1.82
TPM1-208ENST00000404484 PTGER2P43116 358 aa26.43■■□□□ 1.82
TPM1-208ENST00000404484 SLC16A10Q8TF71 515 aa26.43■■□□□ 1.82
TPM1-208ENST00000404484 TUBGCP6Q96RT7 1819 aa26.43■■□□□ 1.82
TPM1-208ENST00000404484 F6X3S4 739 aa26.42■■□□□ 1.82
TPM1-208ENST00000404484 MSH5O43196 834 aa26.42■■□□□ 1.82
TPM1-208ENST00000404484 DDX58O95786 925 aaKnown RBP26.42■■□□□ 1.82
TPM1-208ENST00000404484 HDAC1Q13547 482 aaPredicted RBP26.42■■□□□ 1.82
TPM1-208ENST00000404484 VSIG10Q8N0Z9 540 aa26.41■■□□□ 1.82
TPM1-208ENST00000404484 GNPATO15228 680 aa26.41■■□□□ 1.82
TPM1-208ENST00000404484 RC3H1Q5TC82 1133 aaKnown RBP26.41■■□□□ 1.82
TPM1-208ENST00000404484 FLAD1Q8NFF5 587 aa26.41■■□□□ 1.82
TPM1-208ENST00000404484 TEX13AQ9BXU3 409 aaPredicted RBP26.41■■□□□ 1.82
TPM1-208ENST00000404484 QSER1Q2KHR3 1735 aa26.4■■□□□ 1.82
TPM1-208ENST00000404484 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.4■■□□□ 1.82
TPM1-208ENST00000404484 PHF14O94880 888 aa26.4■■□□□ 1.82
TPM1-208ENST00000404484 IGHDP01880 384 aa26.4■■□□□ 1.82
TPM1-208ENST00000404484 DNAJC10Q8IXB1 793 aa26.4■■□□□ 1.82
TPM1-208ENST00000404484 SGIP1Q9BQI5 828 aa26.4■■□□□ 1.82
TPM1-208ENST00000404484 ZNF831Q5JPB2 1677 aa26.4■■□□□ 1.82
TPM1-208ENST00000404484 USP16Q9Y5T5 823 aa26.39■■□□□ 1.82
TPM1-208ENST00000404484 ANXA1P04083 346 aa26.38■■□□□ 1.81
TPM1-208ENST00000404484 PDIA6Q15084 440 aa26.38■■□□□ 1.81
TPM1-208ENST00000404484 PROSER3Q2NL68 480 aa26.38■■□□□ 1.81
TPM1-208ENST00000404484 DNAAF4Q8WXU2 420 aa26.38■■□□□ 1.81
TPM1-208ENST00000404484 CNTNAP4Q9C0A0 1308 aa26.38■■□□□ 1.81
TPM1-208ENST00000404484 SSFA2P28290 1259 aa26.37■■□□□ 1.81
TPM1-208ENST00000404484 ATP10DQ9P241 1426 aa26.37■■□□□ 1.81
TPM1-208ENST00000404484 CRKLP46109 303 aaKnown RBP26.37■■□□□ 1.81
TPM1-208ENST00000404484 KSR2Q6VAB6 950 aa26.37■■□□□ 1.81
TPM1-208ENST00000404484 PI4KAP2A4QPH2 592 aa26.36■■□□□ 1.81
TPM1-208ENST00000404484 PI4KAP1Q8N8J0 262 aa26.36■■□□□ 1.81
TPM1-208ENST00000404484 PPP1R1BQ9UD71 204 aaPredicted RBP26.36■■□□□ 1.81
TPM1-208ENST00000404484 RTCBQ9Y3I0 505 aaKnown RBP26.36■■□□□ 1.81
TPM1-208ENST00000404484 UBR3Q6ZT12 1888 aa26.35■■□□□ 1.81
TPM1-208ENST00000404484 RPS6KA4O75676 772 aa26.35■■□□□ 1.81
TPM1-208ENST00000404484 GNAI3P08754 354 aa26.35■■□□□ 1.81
TPM1-208ENST00000404484 SRCIN1Q9C0H9 1055 aa26.35■■□□□ 1.81
TPM1-208ENST00000404484 MYH14Q7Z406 1995 aaKnown RBP26.35■■□□□ 1.81
TPM1-208ENST00000404484 ADCY9O60503 1353 aa26.35■■□□□ 1.81
TPM1-208ENST00000404484 CYP19A1P11511 503 aaPredicted RBP26.34■■□□□ 1.81
TPM1-208ENST00000404484 INTS5Q6P9B9 1019 aaKnown RBP26.34■■□□□ 1.81
TPM1-208ENST00000404484 TRAPPC3LQ5T215 181 aa26.33■■□□□ 1.81
TPM1-208ENST00000404484 COL5A3P25940 1745 aaPredicted RBP26.33■■□□□ 1.81
TPM1-208ENST00000404484 MYL6BP14649 208 aa26.33■■□□□ 1.8
TPM1-208ENST00000404484 MEIS3Q99687 375 aa26.33■■□□□ 1.8
TPM1-208ENST00000404484 MSL1Q68DK7 614 aa26.32■■□□□ 1.8
TPM1-208ENST00000404484 MAP3K2Q9Y2U5 619 aa26.32■■□□□ 1.8
TPM1-208ENST00000404484 TJP1Q07157 1748 aa26.32■■□□□ 1.8
TPM1-208ENST00000404484 STARD3NLO95772 234 aa26.31■■□□□ 1.8
TPM1-208ENST00000404484 RPAP2Q8IXW5 612 aaPredicted RBP26.31■■□□□ 1.8
TPM1-208ENST00000404484 XAGE3Q8WTP9 111 aa26.31■■□□□ 1.8
TPM1-208ENST00000404484 ARHGEF1Q92888 912 aaKnown RBP26.31■■□□□ 1.8
TPM1-208ENST00000404484 C1orf115Q9H7X2 142 aa26.31■■□□□ 1.8
TPM1-208ENST00000404484 ALDH1L1O75891 902 aa26.3■■□□□ 1.8
TPM1-208ENST00000404484 BEND3Q5T5X7 828 aa26.3■■□□□ 1.8
TPM1-208ENST00000404484 LRP10Q7Z4F1 713 aa26.3■■□□□ 1.8
TPM1-208ENST00000404484 CCDC87Q9NVE4 849 aa26.3■■□□□ 1.8
TPM1-208ENST00000404484 GNAI2P04899 355 aa26.29■■□□□ 1.8
TPM1-208ENST00000404484 AIMP1Q12904 312 aaKnown RBP26.29■■□□□ 1.8
TPM1-208ENST00000404484 ARXQ96QS3 562 aa26.29■■□□□ 1.8
TPM1-208ENST00000404484 IBTKQ9P2D0 1353 aaPredicted RBP26.29■■□□□ 1.8
TPM1-208ENST00000404484 ADRA2BP18089 450 aa26.29■■□□□ 1.8
TPM1-208ENST00000404484 POLD1P28340 1107 aa26.29■■□□□ 1.8
TPM1-208ENST00000404484 COPS6Q7L5N1 327 aa26.29■■□□□ 1.8
TPM1-208ENST00000404484 RIC3Q7Z5B4 369 aa26.29■■□□□ 1.8
TPM1-208ENST00000404484 CICQ96RK0 1608 aaPredicted RBP26.28■■□□□ 1.8
TPM1-208ENST00000404484 SMC5Q8IY18 1101 aa26.28■■□□□ 1.8
TPM1-208ENST00000404484 ANKRD44Q8N8A2 993 aa26.28■■□□□ 1.8
TPM1-208ENST00000404484 NEXNQ0ZGT2 675 aa26.27■■□□□ 1.8
TPM1-208ENST00000404484 LINS1Q8NG48 757 aa26.27■■□□□ 1.8
TPM1-208ENST00000404484 GCC1Q96CN9 775 aa26.27■■□□□ 1.8
TPM1-208ENST00000404484 HDAC5Q9UQL6 1122 aa26.27■■□□□ 1.8
TPM1-208ENST00000404484 UBTFL1P0CB47 393 aaPredicted RBP26.26■■□□□ 1.79
TPM1-208ENST00000404484 ANKRD13DQ6ZTN6 518 aa26.26■■□□□ 1.79
TPM1-208ENST00000404484 ZBTB1Q9Y2K1 713 aa26.26■■□□□ 1.79
TPM1-208ENST00000404484 RFC4P35249 363 aa26.25■■□□□ 1.79
TPM1-208ENST00000404484 NBPF26B4DH59 902 aa26.24■■□□□ 1.79
TPM1-208ENST00000404484 HMMRO75330 724 aa26.24■■□□□ 1.79
TPM1-208ENST00000404484 A1BGP04217 495 aa26.24■■□□□ 1.79
TPM1-208ENST00000404484 CEP85Q6P2H3 762 aa26.24■■□□□ 1.79
TPM1-208ENST00000404484 NBPF10Q6P3W6 841 aaKnown RBP26.24■■□□□ 1.79
TPM1-208ENST00000404484 NBPF15Q8N660 670 aa26.24■■□□□ 1.79
TPM1-208ENST00000404484 USP44Q9H0E7 712 aa26.24■■□□□ 1.79
TPM1-208ENST00000404484 PLBD2Q8NHP8 589 aa26.24■■□□□ 1.79
TPM1-208ENST00000404484 FHDC1Q9C0D6 1143 aaPredicted RBP26.24■■□□□ 1.79
TPM1-208ENST00000404484 COL24A1Q17RW2 1714 aa26.23■■□□□ 1.79
TPM1-208ENST00000404484 METTL22Q9BUU2 404 aaPredicted RBP26.23■■□□□ 1.79
TPM1-208ENST00000404484 SIRT2Q8IXJ6 389 aa26.22■■□□□ 1.79
TPM1-208ENST00000404484 PIP4K2AP48426 406 aaPredicted RBP26.21■■□□□ 1.79
TPM1-208ENST00000404484 SYT17Q9BSW7 474 aa26.21■■□□□ 1.79
TPM1-208ENST00000404484 PDZRN3Q9UPQ7 1066 aa26.21■■□□□ 1.79
TPM1-208ENST00000404484 GYS1P13807 737 aa26.2■■□□□ 1.79
TPM1-208ENST00000404484 SRP68Q9UHB9 627 aaKnown RBP26.2■■□□□ 1.79
TPM1-208ENST00000404484 ARFGEF2Q9Y6D5 1785 aa26.2■■□□□ 1.78
TPM1-208ENST00000404484 EIF5P55010 431 aaKnown RBP26.19■■□□□ 1.78
TPM1-208ENST00000404484 C9orf78Q9NZ63 289 aaPredicted RBP26.19■■□□□ 1.78
TPM1-208ENST00000404484 NLGN1Q8N2Q7 840 aa26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms