RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 HTATSF1O43719 755 aaKnown RBP37.93■■■■□ 3.66
HMGB1-205ENST00000399494 SRGNP10124 158 aa37.93■■■■□ 3.66
HMGB1-205ENST00000399494 DCTN1Q14203 1278 aa37.93■■■■□ 3.66
HMGB1-205ENST00000399494 STYK1Q6J9G0 422 aa37.93■■■■□ 3.66
HMGB1-205ENST00000399494 JMYQ8N9B5 988 aa37.93■■■■□ 3.66
HMGB1-205ENST00000399494 NPHP1O15259 732 aa37.92■■■■□ 3.66
HMGB1-205ENST00000399494 ST5P78524 1137 aa37.92■■■■□ 3.66
HMGB1-205ENST00000399494 DPY19L2Q6NUT2 758 aa37.92■■■■□ 3.66
HMGB1-205ENST00000399494 CNKSR1Q969H4 720 aa37.92■■■■□ 3.66
HMGB1-205ENST00000399494 DDX10Q13206 875 aaKnown RBP37.91■■■■□ 3.66
HMGB1-205ENST00000399494 TIAM2Q8IVF5 1701 aa37.91■■■■□ 3.66
HMGB1-205ENST00000399494 ERFEQ4G0M1 354 aa37.9■■■■□ 3.66
HMGB1-205ENST00000399494 BCORQ6W2J9 1755 aa37.9■■■■□ 3.66
HMGB1-205ENST00000399494 FER1L6Q2WGJ9 1857 aa37.9■■■■□ 3.66
HMGB1-205ENST00000399494 LTBP3Q9NS15 1303 aa37.89■■■■□ 3.66
HMGB1-205ENST00000399494 NBPF26B4DH59 902 aa37.88■■■■□ 3.65
HMGB1-205ENST00000399494 NBPF10Q6P3W6 841 aaKnown RBP37.88■■■■□ 3.65
HMGB1-205ENST00000399494 NBPF15Q8N660 670 aa37.88■■■■□ 3.65
HMGB1-205ENST00000399494 MASTLQ96GX5 879 aa37.88■■■■□ 3.65
HMGB1-205ENST00000399494 PRPF40BQ6NWY9 871 aaKnown RBP37.87■■■■□ 3.65
HMGB1-205ENST00000399494 TAF7Q15545 349 aaPredicted RBP37.86■■■■□ 3.65
HMGB1-205ENST00000399494 NBPF5PQ86XG9 351 aaPredicted RBP37.86■■■■□ 3.65
HMGB1-205ENST00000399494 SLX4Q8IY92 1834 aa37.86■■■■□ 3.65
HMGB1-205ENST00000399494 TAOK3Q9H2K8 898 aa37.85■■■■□ 3.65
HMGB1-205ENST00000399494 ZNF652Q9Y2D9 606 aa37.85■■■■□ 3.65
HMGB1-205ENST00000399494 DICER1Q9UPY3 1922 aaKnown RBP37.83■■■■□ 3.65
HMGB1-205ENST00000399494 RGL2O15211 777 aa37.82■■■■□ 3.64
HMGB1-205ENST00000399494 SOGA3Q5TF21 947 aa37.82■■■■□ 3.64
HMGB1-205ENST00000399494 C7orf43Q8WVR3 580 aa37.82■■■■□ 3.64
HMGB1-205ENST00000399494 MIS18AQ9NYP9 233 aa37.82■■■■□ 3.64
HMGB1-205ENST00000399494 KLRG2A4D1S0 409 aaPredicted RBP37.81■■■■□ 3.64
HMGB1-205ENST00000399494 TPTE2Q6XPS3 522 aa37.8■■■■□ 3.64
HMGB1-205ENST00000399494 NIP7Q9Y221 180 aaKnown RBP eCLIP37.79■■■■□ 3.64
HMGB1-205ENST00000399494 NPR1P16066 1061 aa37.78■■■■□ 3.64
HMGB1-205ENST00000399494 DDNO94850 711 aaPredicted RBP37.76■■■■□ 3.64
HMGB1-205ENST00000399494 HLFQ16534 295 aa37.76■■■■□ 3.64
HMGB1-205ENST00000399494 ARFGEF2Q9Y6D5 1785 aa37.75■■■■□ 3.63
HMGB1-205ENST00000399494 CACNA1SQ13698 1873 aa37.75■■■■□ 3.63
HMGB1-205ENST00000399494 FAM177BA6PVY3 158 aa37.72■■■■□ 3.63
HMGB1-205ENST00000399494 PLEKHF1Q96S99 279 aa37.72■■■■□ 3.63
HMGB1-205ENST00000399494 CCDC93Q567U6 631 aa37.71■■■■□ 3.63
HMGB1-205ENST00000399494 PNISRQ8TF01 805 aaKnown RBP37.71■■■■□ 3.63
HMGB1-205ENST00000399494 ZNF316A6NFI3 1004 aaPredicted RBP37.7■■■■□ 3.63
HMGB1-205ENST00000399494 NEFMP07197 916 aa37.7■■■■□ 3.63
HMGB1-205ENST00000399494 COL13A1Q5TAT6 717 aaPredicted RBP37.69■■■■□ 3.62
HMGB1-205ENST00000399494 CHADLQ6NUI6 762 aa37.68■■■■□ 3.62
HMGB1-205ENST00000399494 POTEIP0CG38 1075 aa37.67■■■■□ 3.62
HMGB1-205ENST00000399494 POTEJP0CG39 1038 aa37.67■■■■□ 3.62
HMGB1-205ENST00000399494 FKBP4Q02790 459 aaKnown RBP eCLIP37.67■■■■□ 3.62
HMGB1-205ENST00000399494 EIF4A1P60842 406 aaKnown RBP37.66■■■■□ 3.62
HMGB1-205ENST00000399494 OLFM4Q6UX06 510 aa37.66■■■■□ 3.62
HMGB1-205ENST00000399494 NGEFQ8N5V2 710 aa37.66■■■■□ 3.62
HMGB1-205ENST00000399494 PCNTO95613 3336 aa37.66■■■■□ 3.62
HMGB1-205ENST00000399494 ERVV-1B6SEH8 477 aa37.65■■■■□ 3.62
HMGB1-205ENST00000399494 ALDH1B1P30837 517 aa37.65■■■■□ 3.62
HMGB1-205ENST00000399494 DLG5Q8TDM6 1919 aa37.65■■■■□ 3.62
HMGB1-205ENST00000399494 GTF2E1P29083 439 aaPredicted RBP37.64■■■■□ 3.62
HMGB1-205ENST00000399494 NFE2L2Q16236 605 aa37.64■■■■□ 3.62
HMGB1-205ENST00000399494 RTKN2Q8IZC4 609 aa37.63■■■■□ 3.61
HMGB1-205ENST00000399494 L3MBTL3Q96JM7 780 aaPredicted RBP37.63■■■■□ 3.61
HMGB1-205ENST00000399494 ZNF277Q9NRM2 450 aaPredicted RBP37.63■■■■□ 3.61
HMGB1-205ENST00000399494 RRP7AQ9Y3A4 280 aaKnown RBP37.63■■■■□ 3.61
HMGB1-205ENST00000399494 LAMB4A4D0S4 1761 aa37.63■■■■□ 3.61
HMGB1-205ENST00000399494 RALBP1Q15311 655 aa37.62■■■■□ 3.61
HMGB1-205ENST00000399494 THUMPD2Q9BTF0 503 aaKnown RBP37.62■■■■□ 3.61
HMGB1-205ENST00000399494 KDM3BQ7LBC6 1761 aa37.62■■■■□ 3.61
HMGB1-205ENST00000399494 TTLL7Q6ZT98 887 aa37.61■■■■□ 3.61
HMGB1-205ENST00000399494 MAP3K15Q6ZN16 1313 aa37.61■■■■□ 3.61
HMGB1-205ENST00000399494 IQCA1LA6NCM1 817 aa37.6■■■■□ 3.61
HMGB1-205ENST00000399494 NYXQ9GZU5 481 aa37.6■■■■□ 3.61
HMGB1-205ENST00000399494 CRY2Q49AN0 593 aa37.59■■■■□ 3.61
HMGB1-205ENST00000399494 NUTM1Q86Y26 1132 aa37.58■■■■□ 3.61
HMGB1-205ENST00000399494 TAF1DQ9H5J8 278 aaPredicted RBP37.58■■■■□ 3.61
HMGB1-205ENST00000399494 SYNE4Q8N205 404 aa37.57■■■■□ 3.6
HMGB1-205ENST00000399494 PNNQ9H307 717 aaKnown RBP37.57■■■■□ 3.6
HMGB1-205ENST00000399494 CREBZFQ9NS37 354 aa37.57■■■■□ 3.6
HMGB1-205ENST00000399494 MYL6BP14649 208 aa37.56■■■■□ 3.6
HMGB1-205ENST00000399494 ZNF541Q9H0D2 1346 aa37.56■■■■□ 3.6
HMGB1-205ENST00000399494 KIF6Q6ZMV9 814 aa37.55■■■■□ 3.6
HMGB1-205ENST00000399494 ABCC12Q96J65 1359 aa37.55■■■■□ 3.6
HMGB1-205ENST00000399494 NUP98P52948 1817 aa37.54■■■■□ 3.6
HMGB1-205ENST00000399494 HSPA1AP0DMV8 641 aaKnown RBP37.54■■■■□ 3.6
HMGB1-205ENST00000399494 HSPA1BP0DMV9 641 aaKnown RBP37.54■■■■□ 3.6
HMGB1-205ENST00000399494 LDHDQ86WU2 507 aa37.54■■■■□ 3.6
HMGB1-205ENST00000399494 SCN4AP35499 1836 aa37.53■■■■□ 3.6
HMGB1-205ENST00000399494 IARSP41252 1262 aaKnown RBP37.53■■■■□ 3.6
HMGB1-205ENST00000399494 FZD9O00144 591 aa37.52■■■■□ 3.6
HMGB1-205ENST00000399494 ZBTB3Q9H5J0 574 aa37.52■■■■□ 3.6
HMGB1-205ENST00000399494 GPTP24298 496 aa37.51■■■■□ 3.6
HMGB1-205ENST00000399494 SUSD4Q5VX71 490 aa37.51■■■■□ 3.6
HMGB1-205ENST00000399494 ZNF34Q8IZ26 560 aa37.51■■■■□ 3.6
HMGB1-205ENST00000399494 PSMD1Q99460 953 aa37.51■■■■□ 3.6
HMGB1-205ENST00000399494 UBN2Q6ZU65 1347 aa37.51■■■■□ 3.6
HMGB1-205ENST00000399494 PASKQ96RG2 1323 aa37.51■■■■□ 3.6
HMGB1-205ENST00000399494 MAPK8IP3Q9UPT6 1336 aa37.51■■■■□ 3.6
HMGB1-205ENST00000399494 SNED1Q8TER0 1413 aa37.51■■■■□ 3.59
HMGB1-205ENST00000399494 HOXA10P31260 410 aaPredicted RBP37.5■■■■□ 3.59
HMGB1-205ENST00000399494 HACL1Q9UJ83 578 aa37.49■■■■□ 3.59
HMGB1-205ENST00000399494 MYBBP1AQ9BQG0 1328 aaKnown RBP37.48■■■■□ 3.59
HMGB1-205ENST00000399494 CC2D2BQ6DHV5 1058 aa37.48■■■■□ 3.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms