RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 MBD3O95983 291 aa16.72■□□□□ 0.27
PCDHA11-201ENST00000398640 ANKRD62A6NC57 917 aa16.72■□□□□ 0.27
PCDHA11-201ENST00000398640 GNPATO15228 680 aa16.72■□□□□ 0.27
PCDHA11-201ENST00000398640 PIP4K2AP48426 406 aaPredicted RBP16.72■□□□□ 0.27
PCDHA11-201ENST00000398640 CCDC152Q4G0S7 254 aa16.72■□□□□ 0.27
PCDHA11-201ENST00000398640 DCAF5Q96JK2 942 aa16.72■□□□□ 0.27
PCDHA11-201ENST00000398640 PDRG1Q9NUG6 133 aa16.72■□□□□ 0.27
PCDHA11-201ENST00000398640 PPFIBP1Q86W92 1011 aa16.71■□□□□ 0.27
PCDHA11-201ENST00000398640 ZNF335Q9H4Z2 1342 aaPredicted RBP16.71■□□□□ 0.27
PCDHA11-201ENST00000398640 MAP7D2Q96T17 732 aa16.71■□□□□ 0.27
PCDHA11-201ENST00000398640 MAP3K2Q9Y2U5 619 aa16.71■□□□□ 0.27
PCDHA11-201ENST00000398640 SLC39A6Q13433 755 aa16.71■□□□□ 0.27
PCDHA11-201ENST00000398640 PDE3AQ14432 1141 aa16.71■□□□□ 0.26
PCDHA11-201ENST00000398640 BLOC1S2Q6QNY1 142 aa16.71■□□□□ 0.26
PCDHA11-201ENST00000398640 NOM1Q5C9Z4 860 aaKnown RBP16.7■□□□□ 0.26
PCDHA11-201ENST00000398640 NIP7Q9Y221 180 aaKnown RBP eCLIP16.7■□□□□ 0.26
PCDHA11-201ENST00000398640 ERCC4Q92889 916 aaPredicted RBP16.7■□□□□ 0.26
PCDHA11-201ENST00000398640 SEC63Q9UGP8 760 aaKnown RBP16.7■□□□□ 0.26
PCDHA11-201ENST00000398640 COL17A1Q9UMD9 1497 aaPredicted RBP16.7■□□□□ 0.26
PCDHA11-201ENST00000398640 MYO1BO43795 1136 aa16.7■□□□□ 0.26
PCDHA11-201ENST00000398640 CHD1LQ86WJ1 897 aa16.7■□□□□ 0.26
PCDHA11-201ENST00000398640 AEBP1Q8IUX7 1158 aa16.7■□□□□ 0.26
PCDHA11-201ENST00000398640 ECM2O94769 699 aaPredicted RBP16.69■□□□□ 0.26
PCDHA11-201ENST00000398640 DZIP3Q86Y13 1208 aaKnown RBP16.69■□□□□ 0.26
PCDHA11-201ENST00000398640 AXDND1Q5T1B0 1012 aaPredicted RBP16.69■□□□□ 0.26
PCDHA11-201ENST00000398640 NLRP3Q96P20 1036 aa16.69■□□□□ 0.26
PCDHA11-201ENST00000398640 BRPF3Q9ULD4 1205 aa16.69■□□□□ 0.26
PCDHA11-201ENST00000398640 CFAP65Q6ZU64 1925 aaKnown RBP16.69■□□□□ 0.26
PCDHA11-201ENST00000398640 ATP5J2-PTCD1G3V325 749 aa16.69■□□□□ 0.26
PCDHA11-201ENST00000398640 SMARCA5O60264 1052 aaPredicted RBP16.69■□□□□ 0.26
PCDHA11-201ENST00000398640 MVPQ14764 893 aaKnown RBP16.69■□□□□ 0.26
PCDHA11-201ENST00000398640 DDX11Q96FC9 970 aa16.69■□□□□ 0.26
PCDHA11-201ENST00000398640 TRMT1LQ7Z2T5 733 aaKnown RBP16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 TNIP1Q15025 636 aa16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 CCDC181Q5TID7 509 aa16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 PIK3C2GO75747 1445 aa16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 H0YHG0 523 aa16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 RBM10P98175 930 aaKnown RBP16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 ZNF287Q9HBT7 754 aa16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 BMP2KQ9NSY1 1161 aaPredicted RBP16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 DACH1Q9UI36 760 aa16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 PREX2Q70Z35 1606 aa16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 TPTE2Q6XPS3 522 aa16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 UTP14AQ9BVJ6 771 aaKnown RBP16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 CTNNA3Q9UI47 895 aa16.68■□□□□ 0.26
PCDHA11-201ENST00000398640 LIG1P18858 919 aa16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 IMMTQ16891 758 aaKnown RBP16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 NFATC2IPQ8NCF5 419 aa16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 FAM83GA6ND36 823 aa16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 HDAC9Q9UKV0 1011 aa16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 SKAP1Q86WV1 359 aa16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 CCDC192P0DO97 292 aa16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 KRT85P78386 507 aa16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 CDKL5O76039 1030 aa16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 CCDC97Q96F63 343 aaPredicted RBP16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 SPATA32Q96LK8 384 aa16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 FEZ1Q99689 392 aa16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 EXOC6BQ9Y2D4 811 aa16.67■□□□□ 0.26
PCDHA11-201ENST00000398640 K7ELQ4 463 aaPredicted RBP16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 ALDH1L2Q3SY69 923 aa16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 ASXL1Q8IXJ9 1541 aa16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 A0A1W2PP64 1363 aa16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 CCP110O43303 1012 aa16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 CA8P35219 290 aa16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 ANKRD13DQ6ZTN6 518 aa16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 ANKRD18AQ8IVF6 992 aa16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 PIK3R4Q99570 1358 aa16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 SSR1P43307 286 aaKnown RBP16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 WDR33Q9C0J8 1336 aaKnown RBP16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 SEPT7Q16181 437 aaKnown RBP16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 JDP2Q8WYK2 163 aa16.66■□□□□ 0.26
PCDHA11-201ENST00000398640 RANBP6O60518 1105 aaKnown RBP16.65■□□□□ 0.26
PCDHA11-201ENST00000398640 ERLIN2O94905 339 aa16.65■□□□□ 0.26
PCDHA11-201ENST00000398640 PPP4R3AQ6IN85 833 aa16.65■□□□□ 0.26
PCDHA11-201ENST00000398640 DHX8Q14562 1220 aaKnown RBP16.65■□□□□ 0.26
PCDHA11-201ENST00000398640 DHX37Q8IY37 1157 aaKnown RBP16.65■□□□□ 0.26
PCDHA11-201ENST00000398640 ZNF444Q8N0Y2 327 aaPredicted RBP16.65■□□□□ 0.26
PCDHA11-201ENST00000398640 CASTP20810 708 aaKnown RBP16.65■□□□□ 0.26
PCDHA11-201ENST00000398640 FLIIQ13045 1269 aa16.65■□□□□ 0.26
PCDHA11-201ENST00000398640 PZPP20742 1482 aa16.64■□□□□ 0.26
PCDHA11-201ENST00000398640 ZFYVE9O95405 1425 aa16.64■□□□□ 0.25
PCDHA11-201ENST00000398640 RPAP2Q8IXW5 612 aaPredicted RBP16.64■□□□□ 0.25
PCDHA11-201ENST00000398640 CENPHQ9H3R5 247 aa16.64■□□□□ 0.25
PCDHA11-201ENST00000398640 POLKQ9UBT6 870 aa16.64■□□□□ 0.25
PCDHA11-201ENST00000398640 KDM5CP41229 1560 aa16.64■□□□□ 0.25
PCDHA11-201ENST00000398640 EDC4Q6P2E9 1401 aaKnown RBP16.64■□□□□ 0.25
PCDHA11-201ENST00000398640 CEP57L1Q8IYX8 460 aa16.64■□□□□ 0.25
PCDHA11-201ENST00000398640 LDHAL6AQ6ZMR3 332 aa16.64■□□□□ 0.25
PCDHA11-201ENST00000398640 MAP3K19Q56UN5 1328 aa16.64■□□□□ 0.25
PCDHA11-201ENST00000398640 BOLA2Q9H3K6 86 aa16.64■□□□□ 0.25
PCDHA11-201ENST00000398640 F6X3S4 739 aa16.63■□□□□ 0.25
PCDHA11-201ENST00000398640 LMOD1P29536 600 aaPredicted RBP16.63■□□□□ 0.25
PCDHA11-201ENST00000398640 SLFN5Q08AF3 891 aa16.63■□□□□ 0.25
PCDHA11-201ENST00000398640 TMEM57Q8N5G2 664 aa16.63■□□□□ 0.25
PCDHA11-201ENST00000398640 ERVK-7P63135 1459 aa16.63■□□□□ 0.25
PCDHA11-201ENST00000398640 MAP3K5Q99683 1374 aa16.63■□□□□ 0.25
PCDHA11-201ENST00000398640 MAP3K12Q12852 859 aa16.63■□□□□ 0.25
PCDHA11-201ENST00000398640 EYA1Q99502 592 aa16.63■□□□□ 0.25
PCDHA11-201ENST00000398640 TRIM21P19474 475 aaKnown RBP16.63■□□□□ 0.25
PCDHA11-201ENST00000398640 PTPRCP08575 1304 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms