RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 NFATC2IPQ8NCF5 419 aa13□□□□□ -0.33
NEDD9-203ENST00000397378 SCN11AQ9UI33 1791 aa12.99□□□□□ -0.33
NEDD9-203ENST00000397378 PLEKHO1Q53GL0 409 aaPredicted RBP12.99□□□□□ -0.33
NEDD9-203ENST00000397378 CNKSR1Q969H4 720 aa12.99□□□□□ -0.33
NEDD9-203ENST00000397378 BRIP1Q9BX63 1249 aa12.99□□□□□ -0.33
NEDD9-203ENST00000397378 NPHP1O15259 732 aa12.98□□□□□ -0.33
NEDD9-203ENST00000397378 C1orf141Q5JVX7 400 aa12.98□□□□□ -0.33
NEDD9-203ENST00000397378 ZBTB1Q9Y2K1 713 aa12.98□□□□□ -0.33
NEDD9-203ENST00000397378 AMOTQ4VCS5 1084 aa12.97□□□□□ -0.33
NEDD9-203ENST00000397378 TLL2Q9Y6L7 1015 aa12.97□□□□□ -0.33
NEDD9-203ENST00000397378 CYP19A1P11511 503 aaPredicted RBP12.96□□□□□ -0.33
NEDD9-203ENST00000397378 CCDC93Q567U6 631 aa12.96□□□□□ -0.33
NEDD9-203ENST00000397378 TBC1D9BQ66K14 1250 aa12.96□□□□□ -0.33
NEDD9-203ENST00000397378 STYK1Q6J9G0 422 aa12.96□□□□□ -0.33
NEDD9-203ENST00000397378 PRR5LQ6MZQ0 368 aa12.96□□□□□ -0.33
NEDD9-203ENST00000397378 ZNF277Q9NRM2 450 aaPredicted RBP12.96□□□□□ -0.33
NEDD9-203ENST00000397378 TRAF5O00463 557 aa12.95□□□□□ -0.34
NEDD9-203ENST00000397378 CANXP27824 592 aaKnown RBP12.95□□□□□ -0.34
NEDD9-203ENST00000397378 BRPF1P55201 1214 aaPredicted RBP12.95□□□□□ -0.34
NEDD9-203ENST00000397378 CST9Q5W186 159 aa12.95□□□□□ -0.34
NEDD9-203ENST00000397378 LMOD1P29536 600 aaPredicted RBP12.94□□□□□ -0.34
NEDD9-203ENST00000397378 FKBP4Q02790 459 aaKnown RBP eCLIP12.94□□□□□ -0.34
NEDD9-203ENST00000397378 CIAPIN1Q6FI81 312 aa12.94□□□□□ -0.34
NEDD9-203ENST00000397378 GPC2Q8N158 579 aa12.94□□□□□ -0.34
NEDD9-203ENST00000397378 GCC1Q96CN9 775 aa12.94□□□□□ -0.34
NEDD9-203ENST00000397378 MASTLQ96GX5 879 aa12.94□□□□□ -0.34
NEDD9-203ENST00000397378 SCN7AQ01118 1682 aa12.93□□□□□ -0.34
NEDD9-203ENST00000397378 SRGNP10124 158 aa12.93□□□□□ -0.34
NEDD9-203ENST00000397378 TNNT2P45379 298 aaPredicted RBP12.93□□□□□ -0.34
NEDD9-203ENST00000397378 ST5P78524 1137 aa12.93□□□□□ -0.34
NEDD9-203ENST00000397378 CNBD1Q8NA66 436 aa12.93□□□□□ -0.34
NEDD9-203ENST00000397378 GJA3Q9Y6H8 435 aa12.93□□□□□ -0.34
NEDD9-203ENST00000397378 FZD9O00144 591 aa12.92□□□□□ -0.34
NEDD9-203ENST00000397378 SAPCD2Q86UD0 394 aa12.92□□□□□ -0.34
NEDD9-203ENST00000397378 IARSP41252 1262 aaKnown RBP12.91□□□□□ -0.34
NEDD9-203ENST00000397378 SLC39A6Q13433 755 aa12.91□□□□□ -0.34
NEDD9-203ENST00000397378 NBPF15Q8N660 670 aa12.91□□□□□ -0.34
NEDD9-203ENST00000397378 ZNF330Q9Y3S2 320 aaPredicted RBP12.91□□□□□ -0.34
NEDD9-203ENST00000397378 BCORQ6W2J9 1755 aa12.9□□□□□ -0.34
NEDD9-203ENST00000397378 A0A087WZG4 1122 aa12.9□□□□□ -0.34
NEDD9-203ENST00000397378 CELF2O95319 508 aaKnown RBP12.9□□□□□ -0.34
NEDD9-203ENST00000397378 C7orf43Q8WVR3 580 aa12.9□□□□□ -0.34
NEDD9-203ENST00000397378 JDP2Q8WYK2 163 aa12.9□□□□□ -0.34
NEDD9-203ENST00000397378 EPS15P42566 896 aa12.89□□□□□ -0.35
NEDD9-203ENST00000397378 EIF6P56537 245 aaKnown RBP12.89□□□□□ -0.35
NEDD9-203ENST00000397378 OLFM4Q6UX06 510 aa12.89□□□□□ -0.35
NEDD9-203ENST00000397378 AEBP1Q8IUX7 1158 aa12.89□□□□□ -0.35
NEDD9-203ENST00000397378 RTKN2Q8IZC4 609 aa12.89□□□□□ -0.35
NEDD9-203ENST00000397378 SETDB2Q96T68 719 aa12.89□□□□□ -0.35
NEDD9-203ENST00000397378 ZNF408Q9H9D4 720 aa12.89□□□□□ -0.35
NEDD9-203ENST00000397378 MRC1P22897 1456 aa12.89□□□□□ -0.35
NEDD9-203ENST00000397378 EIF5P55010 431 aaKnown RBP12.88□□□□□ -0.35
NEDD9-203ENST00000397378 USP50Q70EL3 339 aaPredicted RBP12.88□□□□□ -0.35
NEDD9-203ENST00000397378 SYNE4Q8N205 404 aa12.88□□□□□ -0.35
NEDD9-203ENST00000397378 HHIPL1Q96JK4 782 aa12.88□□□□□ -0.35
NEDD9-203ENST00000397378 SLC52A2Q9HAB3 445 aa12.88□□□□□ -0.35
NEDD9-203ENST00000397378 TBC1D2BQ9UPU7 963 aa12.88□□□□□ -0.35
NEDD9-203ENST00000397378 UBR2Q8IWV8 1755 aa12.88□□□□□ -0.35
NEDD9-203ENST00000397378 NPR1P16066 1061 aa12.87□□□□□ -0.35
NEDD9-203ENST00000397378 SCNN1DP51172 638 aa12.87□□□□□ -0.35
NEDD9-203ENST00000397378 NOGQ13253 232 aa12.87□□□□□ -0.35
NEDD9-203ENST00000397378 AKAP4Q5JQC9 854 aa12.87□□□□□ -0.35
NEDD9-203ENST00000397378 HABP4Q5JVS0 413 aaKnown RBP12.87□□□□□ -0.35
NEDD9-203ENST00000397378 SULT6B1Q6IMI4 303 aa12.87□□□□□ -0.35
NEDD9-203ENST00000397378 STARD3NLO95772 234 aa12.86□□□□□ -0.35
NEDD9-203ENST00000397378 ZIC5Q96T25 663 aa12.86□□□□□ -0.35
NEDD9-203ENST00000397378 TIMELESSQ9UNS1 1208 aa12.86□□□□□ -0.35
NEDD9-203ENST00000397378 NPM2Q86SE8 214 aaKnown RBP12.85□□□□□ -0.35
NEDD9-203ENST00000397378 VSIG10Q8N0Z9 540 aa12.85□□□□□ -0.35
NEDD9-203ENST00000397378 POLR3GLQ9BT43 218 aa12.85□□□□□ -0.35
NEDD9-203ENST00000397378 GLIS2Q9BZE0 524 aaPredicted RBP12.85□□□□□ -0.35
NEDD9-203ENST00000397378 PANK3Q9H999 370 aa12.85□□□□□ -0.35
NEDD9-203ENST00000397378 IL13P35225 146 aa12.84□□□□□ -0.35
NEDD9-203ENST00000397378 CTU1Q7Z7A3 348 aaKnown RBP12.84□□□□□ -0.35
NEDD9-203ENST00000397378 NBPF5PQ86XG9 351 aaPredicted RBP12.84□□□□□ -0.35
NEDD9-203ENST00000397378 LGR6Q9HBX8 967 aa12.84□□□□□ -0.35
NEDD9-203ENST00000397378 COL4A5P29400 1685 aa12.83□□□□□ -0.35
NEDD9-203ENST00000397378 RNMTO43148 476 aaKnown RBP12.83□□□□□ -0.36
NEDD9-203ENST00000397378 MORC1Q86VD1 984 aa12.83□□□□□ -0.36
NEDD9-203ENST00000397378 SAGE1Q9NXZ1 904 aa12.83□□□□□ -0.36
NEDD9-203ENST00000397378 AKAP11Q9UKA4 1901 aa12.82□□□□□ -0.36
NEDD9-203ENST00000397378 TRPA1O75762 1119 aa12.82□□□□□ -0.36
NEDD9-203ENST00000397378 ADARB2Q9NS39 739 aaKnown RBP12.82□□□□□ -0.36
NEDD9-203ENST00000397378 HPS5Q9UPZ3 1129 aa12.82□□□□□ -0.36
NEDD9-203ENST00000397378 HUNKP57058 714 aa12.81□□□□□ -0.36
NEDD9-203ENST00000397378 TTC5Q8N0Z6 440 aa12.81□□□□□ -0.36
NEDD9-203ENST00000397378 LARGE2Q8N3Y3 721 aa12.81□□□□□ -0.36
NEDD9-203ENST00000397378 PSMD1Q99460 953 aa12.81□□□□□ -0.36
NEDD9-203ENST00000397378 SIPA1L3O60292 1781 aaPredicted RBP12.8□□□□□ -0.36
NEDD9-203ENST00000397378 CAMTA2O94983 1202 aa12.8□□□□□ -0.36
NEDD9-203ENST00000397378 ALDH1B1P30837 517 aa12.8□□□□□ -0.36
NEDD9-203ENST00000397378 IL6STP40189 918 aaPredicted RBP12.8□□□□□ -0.36
NEDD9-203ENST00000397378 RNF186Q9NXI6 227 aa12.8□□□□□ -0.36
NEDD9-203ENST00000397378 GPRC5DQ9NZD1 345 aa12.8□□□□□ -0.36
NEDD9-203ENST00000397378 DZIP3Q86Y13 1208 aaKnown RBP12.79□□□□□ -0.36
NEDD9-203ENST00000397378 KLRG2A4D1S0 409 aaPredicted RBP12.78□□□□□ -0.36
NEDD9-203ENST00000397378 FAM177BA6PVY3 158 aa12.78□□□□□ -0.36
NEDD9-203ENST00000397378 FXR1P51114 621 aaKnown RBP eCLIP12.78□□□□□ -0.36
NEDD9-203ENST00000397378 KIF23Q02241 960 aaPredicted RBP12.78□□□□□ -0.36
NEDD9-203ENST00000397378 RGMBQ6NW40 437 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms