RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 AMER1Q5JTC6 1135 aaPredicted RBP11.88□□□□□ -0.51
CAPN3-208ENST00000397204 DNAJC10Q8IXB1 793 aa11.88□□□□□ -0.51
CAPN3-208ENST00000397204 C16orf71Q8IYS4 520 aaPredicted RBP11.88□□□□□ -0.51
CAPN3-208ENST00000397204 VSIG10Q8N0Z9 540 aa11.88□□□□□ -0.51
CAPN3-208ENST00000397204 NARFQ9UHQ1 456 aa11.88□□□□□ -0.51
CAPN3-208ENST00000397204 MYH14Q7Z406 1995 aaKnown RBP11.87□□□□□ -0.51
CAPN3-208ENST00000397204 CHRNA5P30532 468 aa11.87□□□□□ -0.51
CAPN3-208ENST00000397204 USPL1Q5W0Q7 1092 aa11.87□□□□□ -0.51
CAPN3-208ENST00000397204 RNF181Q9P0P0 153 aa11.87□□□□□ -0.51
CAPN3-208ENST00000397204 KIF13BQ9NQT8 1826 aa11.87□□□□□ -0.51
CAPN3-208ENST00000397204 SOS1Q07889 1333 aaPredicted RBP11.86□□□□□ -0.51
CAPN3-208ENST00000397204 C4AP0C0L4 1744 aa11.86□□□□□ -0.51
CAPN3-208ENST00000397204 PCNTO95613 3336 aa11.86□□□□□ -0.51
CAPN3-208ENST00000397204 DIAPH1O60610 1272 aaKnown RBP11.85□□□□□ -0.51
CAPN3-208ENST00000397204 HMOX1P09601 288 aa11.85□□□□□ -0.51
CAPN3-208ENST00000397204 SLC39A6Q13433 755 aa11.85□□□□□ -0.51
CAPN3-208ENST00000397204 NFIXQ14938 502 aa11.85□□□□□ -0.51
CAPN3-208ENST00000397204 MTHFSDQ2M296 383 aaKnown RBP11.85□□□□□ -0.51
CAPN3-208ENST00000397204 RRAGCQ9HB90 399 aa11.85□□□□□ -0.51
CAPN3-208ENST00000397204 ZC3H4Q9UPT8 1303 aaKnown RBP11.85□□□□□ -0.51
CAPN3-208ENST00000397204 N4BP2Q86UW6 1770 aaPredicted RBP11.84□□□□□ -0.51
CAPN3-208ENST00000397204 PER1O15534 1290 aaPredicted RBP11.84□□□□□ -0.51
CAPN3-208ENST00000397204 STARD3NLO95772 234 aa11.84□□□□□ -0.51
CAPN3-208ENST00000397204 SERPINB2P05120 415 aa11.84□□□□□ -0.51
CAPN3-208ENST00000397204 CCER1Q8TC90 406 aaPredicted RBP11.84□□□□□ -0.51
CAPN3-208ENST00000397204 COL5A3P25940 1745 aaPredicted RBP11.83□□□□□ -0.52
CAPN3-208ENST00000397204 KIAA1551Q9HCM1 1747 aa11.83□□□□□ -0.52
CAPN3-208ENST00000397204 A0A087WZG4 1122 aa11.83□□□□□ -0.52
CAPN3-208ENST00000397204 LMNB1P20700 586 aa11.83□□□□□ -0.52
CAPN3-208ENST00000397204 DPY19L2Q6NUT2 758 aa11.83□□□□□ -0.52
CAPN3-208ENST00000397204 MAMSTRQ6ZN01 415 aa11.83□□□□□ -0.52
CAPN3-208ENST00000397204 TTLL6Q8N841 843 aa11.83□□□□□ -0.52
CAPN3-208ENST00000397204 TEX13AQ9BXU3 409 aaPredicted RBP11.83□□□□□ -0.52
CAPN3-208ENST00000397204 BCL2L12Q9HB09 334 aa11.83□□□□□ -0.52
CAPN3-208ENST00000397204 RTN4Q9NQC3 1192 aaKnown RBP11.83□□□□□ -0.52
CAPN3-208ENST00000397204 ZBTB1Q9Y2K1 713 aa11.83□□□□□ -0.52
CAPN3-208ENST00000397204 H0YIN7 160 aa11.82□□□□□ -0.52
CAPN3-208ENST00000397204 EIF5P55010 431 aaKnown RBP11.82□□□□□ -0.52
CAPN3-208ENST00000397204 TTC5Q8N0Z6 440 aa11.82□□□□□ -0.52
CAPN3-208ENST00000397204 KLRG1Q96E93 195 aa11.82□□□□□ -0.52
CAPN3-208ENST00000397204 PDZRN3Q9UPQ7 1066 aa11.82□□□□□ -0.52
CAPN3-208ENST00000397204 GLTPD2A6NH11 291 aa11.81□□□□□ -0.52
CAPN3-208ENST00000397204 VEGFAP15692 232 aaPredicted RBP11.81□□□□□ -0.52
CAPN3-208ENST00000397204 CANXP27824 592 aaKnown RBP11.81□□□□□ -0.52
CAPN3-208ENST00000397204 JMYQ8N9B5 988 aa11.81□□□□□ -0.52
CAPN3-208ENST00000397204 SMC1BQ8NDV3 1235 aa11.81□□□□□ -0.52
CAPN3-208ENST00000397204 SCUBE2Q9NQ36 999 aa11.81□□□□□ -0.52
CAPN3-208ENST00000397204 COL15A1P39059 1388 aa11.8□□□□□ -0.52
CAPN3-208ENST00000397204 GNAT3A8MTJ3 354 aa11.8□□□□□ -0.52
CAPN3-208ENST00000397204 C2CD5Q86YS7 1000 aa11.8□□□□□ -0.52
CAPN3-208ENST00000397204 KIF7Q2M1P5 1343 aa11.8□□□□□ -0.52
CAPN3-208ENST00000397204 TEFQ10587 303 aa11.79□□□□□ -0.52
CAPN3-208ENST00000397204 CC2D1BQ5T0F9 858 aaKnown RBP11.79□□□□□ -0.52
CAPN3-208ENST00000397204 ZNF790Q6PG37 636 aa11.79□□□□□ -0.52
CAPN3-208ENST00000397204 IL17REQ8NFR9 667 aa11.79□□□□□ -0.52
CAPN3-208ENST00000397204 BRIP1Q9BX63 1249 aa11.79□□□□□ -0.52
CAPN3-208ENST00000397204 KCPQ6ZWJ8 1503 aa11.79□□□□□ -0.52
CAPN3-208ENST00000397204 PDE6BP35913 854 aa11.78□□□□□ -0.52
CAPN3-208ENST00000397204 IL6STP40189 918 aaPredicted RBP11.78□□□□□ -0.52
CAPN3-208ENST00000397204 HTRA3P83110 453 aa11.78□□□□□ -0.52
CAPN3-208ENST00000397204 RASSF7Q02833 373 aa11.78□□□□□ -0.52
CAPN3-208ENST00000397204 BICDL1Q6ZP65 573 aa11.78□□□□□ -0.52
CAPN3-208ENST00000397204 NPM2Q86SE8 214 aaKnown RBP11.78□□□□□ -0.52
CAPN3-208ENST00000397204 GAS2L2Q8NHY3 880 aa11.78□□□□□ -0.52
CAPN3-208ENST00000397204 ZNF496Q96IT1 587 aaPredicted RBP11.78□□□□□ -0.52
CAPN3-208ENST00000397204 ARFGEF1Q9Y6D6 1849 aa11.78□□□□□ -0.52
CAPN3-208ENST00000397204 BRCA1P38398 1863 aaKnown RBP11.78□□□□□ -0.52
CAPN3-208ENST00000397204 MRC1P22897 1456 aa11.77□□□□□ -0.52
CAPN3-208ENST00000397204 SCN11AQ9UI33 1791 aa11.77□□□□□ -0.52
CAPN3-208ENST00000397204 U2SURPO15042 1029 aaKnown RBP11.77□□□□□ -0.53
CAPN3-208ENST00000397204 PRELPP51888 382 aa11.77□□□□□ -0.53
CAPN3-208ENST00000397204 TBC1D9BQ66K14 1250 aa11.77□□□□□ -0.53
CAPN3-208ENST00000397204 HS6ST3Q8IZP7 471 aa11.77□□□□□ -0.53
CAPN3-208ENST00000397204 FMNL2Q96PY5 1086 aa11.77□□□□□ -0.53
CAPN3-208ENST00000397204 NPC1L1Q9UHC9 1359 aa11.77□□□□□ -0.53
CAPN3-208ENST00000397204 TJP1Q07157 1748 aa11.77□□□□□ -0.53
CAPN3-208ENST00000397204 NFKBIEO00221 500 aa11.76□□□□□ -0.53
CAPN3-208ENST00000397204 ZNF622Q969S3 477 aaKnown RBP eCLIP11.76□□□□□ -0.53
CAPN3-208ENST00000397204 L3MBTL3Q96JM7 780 aaPredicted RBP11.76□□□□□ -0.53
CAPN3-208ENST00000397204 MS4A4AQ96JQ5 239 aa11.76□□□□□ -0.53
CAPN3-208ENST00000397204 SETDB2Q96T68 719 aa11.76□□□□□ -0.53
CAPN3-208ENST00000397204 TBC1D2BQ9UPU7 963 aa11.76□□□□□ -0.53
CAPN3-208ENST00000397204 HEG1Q9ULI3 1381 aa11.76□□□□□ -0.53
CAPN3-208ENST00000397204 ADAMTS7Q9UKP4 1686 aa11.75□□□□□ -0.53
CAPN3-208ENST00000397204 A1BGP04217 495 aa11.75□□□□□ -0.53
CAPN3-208ENST00000397204 PRR5LQ6MZQ0 368 aa11.75□□□□□ -0.53
CAPN3-208ENST00000397204 MFRPQ9BY79 579 aa11.75□□□□□ -0.53
CAPN3-208ENST00000397204 C21orf2O43822 256 aa11.74□□□□□ -0.53
CAPN3-208ENST00000397204 CNKSR1Q969H4 720 aa11.74□□□□□ -0.53
CAPN3-208ENST00000397204 BTBD11A6QL63 1104 aa11.73□□□□□ -0.53
CAPN3-208ENST00000397204 POTECB2RU33 542 aa11.73□□□□□ -0.53
CAPN3-208ENST00000397204 CAMTA2O94983 1202 aa11.73□□□□□ -0.53
CAPN3-208ENST00000397204 ERFEQ4G0M1 354 aa11.73□□□□□ -0.53
CAPN3-208ENST00000397204 COL13A1Q5TAT6 717 aaPredicted RBP11.73□□□□□ -0.53
CAPN3-208ENST00000397204 SOGA3Q5TF21 947 aa11.73□□□□□ -0.53
CAPN3-208ENST00000397204 STYK1Q6J9G0 422 aa11.73□□□□□ -0.53
CAPN3-208ENST00000397204 CLEC4GQ6UXB4 293 aa11.73□□□□□ -0.53
CAPN3-208ENST00000397204 CARMIL3Q8ND23 1372 aa11.73□□□□□ -0.53
CAPN3-208ENST00000397204 FBXO22Q8NEZ5 403 aa11.73□□□□□ -0.53
CAPN3-208ENST00000397204 ZNF330Q9Y3S2 320 aaPredicted RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms