RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 CCDC102AQ96A19 550 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 NAA15Q9BXJ9 866 aaKnown RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 LRRC27Q9C0I9 530 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 DDX19AQ9NUU7 478 aaKnown RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 GCOM1H8Y6P7 765 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 RANBP6O60518 1105 aaKnown RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 MYZAPP0CAP1 466 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 NLRP5P59047 1200 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 PPP4R3BQ5MIZ7 849 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 TMTC2Q8N394 836 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 PIK3R4Q99570 1358 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 PAFAH1B1P43034 410 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 BMP2KLQ5H9B9 411 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 DYDC1Q8WWB3 177 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 DENND4BO75064 1496 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 TRAF1Q13077 416 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 CAMK4Q16566 473 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 CCDC194A0A1B0GVG4 234 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 LDHCP07864 332 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 PRPF40BQ6NWY9 871 aaKnown RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 ZGPATQ8N5A5 531 aaKnown RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 AMOTL2Q9Y2J4 779 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 XPCQ01831 940 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 MAP2K1Q02750 393 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 MPHOSPH6Q99547 160 aaKnown RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 SSR1P43307 286 aaKnown RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 CCDC85AQ96PX6 553 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 FAM114A1Q8IWE2 563 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 IFNL2Q8IZJ0 200 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 NUP88Q99567 741 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 ANKRD36BQ8N2N9 1353 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 LDHAL6AQ6ZMR3 332 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 CADPS2Q86UW7 1296 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 PIBF1Q8WXW3 757 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 RRP9O43818 475 aaKnown RBP6.3□□□□□ -1.4
VPS13C-204ENST00000395898 TRIM27P14373 513 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 UBE2HP62256 183 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 KLHL10Q6JEL2 608 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 FERMT1Q9BQL6 677 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 PEG3Q9GZU2 1588 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 MAP3K2Q9Y2U5 619 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 CCDC172P0C7W6 258 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 MFSD6Q6ZSS7 791 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 DDX46Q7L014 1031 aaKnown RBP6.3□□□□□ -1.4
VPS13C-204ENST00000395898 SHTN1A0MZ66 631 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 YEATS4O95619 227 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 CLIP2Q9UDT6 1046 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 PHF8Q9UPP1 1060 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 GOLGA8BA8MQT2 603 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 HLA-DOAP06340 250 aa6.3□□□□□ -1.4
VPS13C-204ENST00000395898 IFI16Q16666 785 aaKnown RBP6.3□□□□□ -1.4
VPS13C-204ENST00000395898 MYO1BO43795 1136 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 CCDC178Q5BJE1 867 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 ECHDC1Q9NTX5 307 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 NBPF7P0C2Y1 421 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-204ENST00000395898 IARSP41252 1262 aaKnown RBP6.29□□□□□ -1.4
VPS13C-204ENST00000395898 GSTO1P78417 241 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 NCOA7Q8NI08 942 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 FOXO3O43524 673 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 PRKCSHP14314 528 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-204ENST00000395898 KIF4BQ2VIQ3 1234 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 NEK1Q96PY6 1258 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 KDM5BQ9UGL1 1544 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 ZFYP08048 801 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-204ENST00000395898 CCDC96Q2M329 555 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 STAMBPO95630 424 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 BMP15O95972 392 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 SNRPA1P09661 255 aaKnown RBP6.29□□□□□ -1.4
VPS13C-204ENST00000395898 FAM193AP78312 1265 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 STX1AQ16623 288 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 CCDC8Q9H0W5 538 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-204ENST00000395898 POTEB2H3BUK9 544 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 RBM10P98175 930 aaKnown RBP6.29□□□□□ -1.4
VPS13C-204ENST00000395898 TMEM67Q5HYA8 995 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 ALS2CR12Q96Q35 445 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 KAT14Q9H8E8 782 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 CFAP43Q8NDM7 1665 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 STX6O43752 255 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 MCM5P33992 734 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 LUZP1Q86V48 1076 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 DDX12PQ92771 950 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 TSPY2A6NKD2 308 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 USP37Q86T82 979 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 SCLT1Q96NL6 688 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 PLVAPQ9BX97 442 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 UQCRFS1P1P0C7P4 283 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 CCDC152Q4G0S7 254 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 HOOK3Q86VS8 718 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 ARHGAP45Q92619 1136 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 CNNM2Q9H8M5 875 aa6.29□□□□□ -1.4
VPS13C-204ENST00000395898 METAP2P50579 478 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS13C-204ENST00000395898 ST5P78524 1137 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 FAM107BQ9H098 131 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 RMND1Q9NWS8 449 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 SETD1BQ9UPS6 1966 aaKnown RBP6.28□□□□□ -1.4
VPS13C-204ENST00000395898 GOLGA8AA7E2F4 631 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 UBA7P41226 1012 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 IDI1Q13907 227 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 EHBP1Q8NDI1 1231 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 GOLGA6L10A0A0M3HER8 536 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms