RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 ZNF330Q9Y3S2 320 aaPredicted RBP17.22■□□□□ 0.35
VAPB-202ENST00000395802 A0A087WZG4 1122 aa17.21■□□□□ 0.35
VAPB-202ENST00000395802 PLSCR1O15162 318 aa17.21■□□□□ 0.35
VAPB-202ENST00000395802 BEND3Q5T5X7 828 aa17.21■□□□□ 0.35
VAPB-202ENST00000395802 PELP1Q8IZL8 1130 aaKnown RBP17.21■□□□□ 0.35
VAPB-202ENST00000395802 HSP90AB3PQ58FF7 597 aa17.21■□□□□ 0.35
VAPB-202ENST00000395802 EP400Q96L91 3159 aa17.2■□□□□ 0.34
VAPB-202ENST00000395802 LY75O60449 1722 aa17.2■□□□□ 0.34
VAPB-202ENST00000395802 INTS5Q6P9B9 1019 aaKnown RBP17.2■□□□□ 0.34
VAPB-202ENST00000395802 ERVV-1B6SEH8 477 aa17.19■□□□□ 0.34
VAPB-202ENST00000395802 EIF5P55010 431 aaKnown RBP17.19■□□□□ 0.34
VAPB-202ENST00000395802 ARXQ96QS3 562 aa17.19■□□□□ 0.34
VAPB-202ENST00000395802 N4BP2Q86UW6 1770 aaPredicted RBP17.19■□□□□ 0.34
VAPB-202ENST00000395802 APBA3O96018 575 aa17.19■□□□□ 0.34
VAPB-202ENST00000395802 RWDD1Q9H446 243 aaPredicted RBP17.19■□□□□ 0.34
VAPB-202ENST00000395802 MAP3K15Q6ZN16 1313 aa17.18■□□□□ 0.34
VAPB-202ENST00000395802 COL5A3P25940 1745 aaPredicted RBP17.18■□□□□ 0.34
VAPB-202ENST00000395802 LINC00116Q8NCU8 138 aa17.18■□□□□ 0.34
VAPB-202ENST00000395802 C9orf78Q9NZ63 289 aaPredicted RBP17.18■□□□□ 0.34
VAPB-202ENST00000395802 RGL2O15211 777 aa17.17■□□□□ 0.34
VAPB-202ENST00000395802 GNAI2P04899 355 aa17.17■□□□□ 0.34
VAPB-202ENST00000395802 TTLL7Q6ZT98 887 aa17.17■□□□□ 0.34
VAPB-202ENST00000395802 DZIP3Q86Y13 1208 aaKnown RBP17.17■□□□□ 0.34
VAPB-202ENST00000395802 RREB1Q92766 1687 aa17.17■□□□□ 0.34
VAPB-202ENST00000395802 UBTFL1P0CB47 393 aaPredicted RBP17.17■□□□□ 0.34
VAPB-202ENST00000395802 RPAP2Q8IXW5 612 aaPredicted RBP17.17■□□□□ 0.34
VAPB-202ENST00000395802 MYD88Q99836 296 aa17.17■□□□□ 0.34
VAPB-202ENST00000395802 ZBTB3Q9H5J0 574 aa17.17■□□□□ 0.34
VAPB-202ENST00000395802 RTCBQ9Y3I0 505 aaKnown RBP17.17■□□□□ 0.34
VAPB-202ENST00000395802 RPS6KA4O75676 772 aa17.16■□□□□ 0.34
VAPB-202ENST00000395802 SF3B2Q13435 895 aaKnown RBP17.16■□□□□ 0.34
VAPB-202ENST00000395802 GIGYF2Q6Y7W6 1299 aaKnown RBP17.16■□□□□ 0.34
VAPB-202ENST00000395802 CENPQQ7L2Z9 268 aaPredicted RBP17.16■□□□□ 0.34
VAPB-202ENST00000395802 AK7Q96M32 723 aa17.16■□□□□ 0.34
VAPB-202ENST00000395802 ZNF652Q9Y2D9 606 aa17.16■□□□□ 0.34
VAPB-202ENST00000395802 NEURL1BA8MQ27 555 aa17.15■□□□□ 0.34
VAPB-202ENST00000395802 CCDC191Q8NCU4 936 aa17.15■□□□□ 0.34
VAPB-202ENST00000395802 MEIS3Q99687 375 aa17.15■□□□□ 0.34
VAPB-202ENST00000395802 USP44Q9H0E7 712 aa17.15■□□□□ 0.34
VAPB-202ENST00000395802 COL15A1P39059 1388 aa17.15■□□□□ 0.34
VAPB-202ENST00000395802 TCIRG1Q13488 830 aa17.14■□□□□ 0.34
VAPB-202ENST00000395802 TXNRD1Q16881 649 aa17.14■□□□□ 0.34
VAPB-202ENST00000395802 ARFGEF2Q9Y6D5 1785 aa17.14■□□□□ 0.33
VAPB-202ENST00000395802 GRM8O00222 908 aa17.14■□□□□ 0.33
VAPB-202ENST00000395802 GNPATO15228 680 aa17.14■□□□□ 0.33
VAPB-202ENST00000395802 ADRA2BP18089 450 aa17.14■□□□□ 0.33
VAPB-202ENST00000395802 TRIM28Q13263 835 aaKnown RBP17.14■□□□□ 0.33
VAPB-202ENST00000395802 HDAC1Q13547 482 aaPredicted RBP17.14■□□□□ 0.33
VAPB-202ENST00000395802 GCKRQ14397 625 aa17.14■□□□□ 0.33
VAPB-202ENST00000395802 CWC25Q9NXE8 425 aaPredicted RBP17.14■□□□□ 0.33
VAPB-202ENST00000395802 PCDHB15Q9Y5E8 787 aa17.14■□□□□ 0.33
VAPB-202ENST00000395802 HMMRO75330 724 aa17.13■□□□□ 0.33
VAPB-202ENST00000395802 IGKV5-2P06315 115 aa17.13■□□□□ 0.33
VAPB-202ENST00000395802 CWF19L2Q2TBE0 894 aaKnown RBP17.13■□□□□ 0.33
VAPB-202ENST00000395802 CLEC4GQ6UXB4 293 aa17.13■□□□□ 0.33
VAPB-202ENST00000395802 KCNQ4P56696 695 aa17.12■□□□□ 0.33
VAPB-202ENST00000395802 TBC1D2BQ9UPU7 963 aa17.12■□□□□ 0.33
VAPB-202ENST00000395802 UTYO14607 1347 aa17.12■□□□□ 0.33
VAPB-202ENST00000395802 TRAPPC3LQ5T215 181 aa17.12■□□□□ 0.33
VAPB-202ENST00000395802 CCDC125Q86Z20 511 aa17.12■□□□□ 0.33
VAPB-202ENST00000395802 LRRC4BQ9NT99 713 aa17.12■□□□□ 0.33
VAPB-202ENST00000395802 MYH14Q7Z406 1995 aaKnown RBP17.12■□□□□ 0.33
VAPB-202ENST00000395802 NUP188Q5SRE5 1749 aa17.11■□□□□ 0.33
VAPB-202ENST00000395802 RGPD3A6NKT7 1758 aaPredicted RBP17.11■□□□□ 0.33
VAPB-202ENST00000395802 RGPD4Q7Z3J3 1758 aa17.11■□□□□ 0.33
VAPB-202ENST00000395802 TAF1LQ8IZX4 1826 aa17.11■□□□□ 0.33
VAPB-202ENST00000395802 ZPR1O75312 459 aa17.11■□□□□ 0.33
VAPB-202ENST00000395802 ISCA1Q9BUE6 129 aa17.11■□□□□ 0.33
VAPB-202ENST00000395802 C4BP0C0L5 1744 aa17.11■□□□□ 0.33
VAPB-202ENST00000395802 ATP5J2-PTCD1G3V325 749 aa17.1■□□□□ 0.33
VAPB-202ENST00000395802 KDM2BQ8NHM5 1336 aa17.1■□□□□ 0.33
VAPB-202ENST00000395802 NBPF7P0C2Y1 421 aaPredicted RBP17.1■□□□□ 0.33
VAPB-202ENST00000395802 ANKRD44Q8N8A2 993 aa17.1■□□□□ 0.33
VAPB-202ENST00000395802 C1orf115Q9H7X2 142 aa17.1■□□□□ 0.33
VAPB-202ENST00000395802 NARFQ9UHQ1 456 aa17.1■□□□□ 0.33
VAPB-202ENST00000395802 CAMTA2O94983 1202 aa17.09■□□□□ 0.33
VAPB-202ENST00000395802 SSFA2P28290 1259 aa17.09■□□□□ 0.33
VAPB-202ENST00000395802 RFC4P35249 363 aa17.09■□□□□ 0.33
VAPB-202ENST00000395802 BAG6P46379 1132 aa17.09■□□□□ 0.33
VAPB-202ENST00000395802 PARP10Q53GL7 1025 aa17.09■□□□□ 0.33
VAPB-202ENST00000395802 GCC1Q96CN9 775 aa17.09■□□□□ 0.33
VAPB-202ENST00000395802 TNS1Q9HBL0 1735 aaKnown RBP17.08■□□□□ 0.33
VAPB-202ENST00000395802 HSP90B1P14625 803 aaKnown RBP17.08■□□□□ 0.33
VAPB-202ENST00000395802 CEP85Q6P2H3 762 aa17.08■□□□□ 0.33
VAPB-202ENST00000395802 PROM2Q8N271 834 aa17.08■□□□□ 0.33
VAPB-202ENST00000395802 LRRFIP2Q9Y608 721 aaKnown RBP17.08■□□□□ 0.33
VAPB-202ENST00000395802 HLFQ16534 295 aa17.07■□□□□ 0.32
VAPB-202ENST00000395802 FLAD1Q8NFF5 587 aa17.07■□□□□ 0.32
VAPB-202ENST00000395802 ATP8B2P98198 1209 aa17.07■□□□□ 0.32
VAPB-202ENST00000395802 AFDNP55196 1824 aaKnown RBP17.06■□□□□ 0.32
VAPB-202ENST00000395802 H7C1W4 665 aa17.06■□□□□ 0.32
VAPB-202ENST00000395802 IGHDP01880 384 aa17.06■□□□□ 0.32
VAPB-202ENST00000395802 ZNF34Q8IZ26 560 aa17.06■□□□□ 0.32
VAPB-202ENST00000395802 ZBTB38Q8NAP3 1195 aaPredicted RBP17.06■□□□□ 0.32
VAPB-202ENST00000395802 UBE3BQ7Z3V4 1068 aa17.05■□□□□ 0.32
VAPB-202ENST00000395802 PPP1R42Q7Z4L9 355 aa17.05■□□□□ 0.32
VAPB-202ENST00000395802 NLRP10Q86W26 655 aa17.05■□□□□ 0.32
VAPB-202ENST00000395802 ARHGEF1Q92888 912 aaKnown RBP17.05■□□□□ 0.32
VAPB-202ENST00000395802 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.05■□□□□ 0.32
VAPB-202ENST00000395802 PCCAP05165 728 aaPredicted RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms