RNA–Protein interactions for RNA: ENST00000379018.7

PDLIM4-202, Transcript of PDZ and LIM domain 4, humanhuman

TSL 1 (best) BASIC

Gene PDLIM4, Length 1,006 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-202ENST00000379018 POTEJP0CG39 1038 aa23.9■■□□□ 1.42
PDLIM4-202ENST00000379018 PRPF40BQ6NWY9 871 aaKnown RBP23.9■■□□□ 1.42
PDLIM4-202ENST00000379018 DZIP3Q86Y13 1208 aaKnown RBP23.9■■□□□ 1.42
PDLIM4-202ENST00000379018 CNKSR1Q969H4 720 aa23.9■■□□□ 1.42
PDLIM4-202ENST00000379018 MKRN1Q9UHC7 482 aaKnown RBP23.9■■□□□ 1.42
PDLIM4-202ENST00000379018 BTBD11A6QL63 1104 aa23.89■■□□□ 1.41
PDLIM4-202ENST00000379018 BCORQ6W2J9 1755 aa23.88■■□□□ 1.41
PDLIM4-202ENST00000379018 CHADLQ6NUI6 762 aa23.88■■□□□ 1.41
PDLIM4-202ENST00000379018 PRKAR2BP31323 418 aa23.87■■□□□ 1.41
PDLIM4-202ENST00000379018 STYK1Q6J9G0 422 aa23.87■■□□□ 1.41
PDLIM4-202ENST00000379018 PRAMEF22A3QJZ6 481 aa23.86■■□□□ 1.41
PDLIM4-202ENST00000379018 SRGNP10124 158 aa23.86■■□□□ 1.41
PDLIM4-202ENST00000379018 NBPF5PQ86XG9 351 aaPredicted RBP23.86■■□□□ 1.41
PDLIM4-202ENST00000379018 MASTLQ96GX5 879 aa23.86■■□□□ 1.41
PDLIM4-202ENST00000379018 PHACTR3Q96KR7 559 aa23.86■■□□□ 1.41
PDLIM4-202ENST00000379018 LTBP3Q9NS15 1303 aa23.85■■□□□ 1.41
PDLIM4-202ENST00000379018 FAM177BA6PVY3 158 aa23.85■■□□□ 1.41
PDLIM4-202ENST00000379018 USP16Q9Y5T5 823 aa23.85■■□□□ 1.41
PDLIM4-202ENST00000379018 ARFGEF2Q9Y6D5 1785 aa23.84■■□□□ 1.41
PDLIM4-202ENST00000379018 CEMIPQ8WUJ3 1361 aa23.83■■□□□ 1.41
PDLIM4-202ENST00000379018 SOGA3Q5TF21 947 aa23.83■■□□□ 1.41
PDLIM4-202ENST00000379018 CREBZFQ9NS37 354 aa23.83■■□□□ 1.41
PDLIM4-202ENST00000379018 CCDC93Q567U6 631 aa23.81■■□□□ 1.4
PDLIM4-202ENST00000379018 EAPPQ56P03 285 aaPredicted RBP23.81■■□□□ 1.4
PDLIM4-202ENST00000379018 MCM10Q7L590 875 aa23.81■■□□□ 1.4
PDLIM4-202ENST00000379018 CFAP53Q96M91 514 aa23.81■■□□□ 1.4
PDLIM4-202ENST00000379018 RSPH6AQ9H0K4 717 aa23.81■■□□□ 1.4
PDLIM4-202ENST00000379018 OLFM4Q6UX06 510 aa23.8■■□□□ 1.4
PDLIM4-202ENST00000379018 ZNF277Q9NRM2 450 aaPredicted RBP23.8■■□□□ 1.4
PDLIM4-202ENST00000379018 ZNF652Q9Y2D9 606 aa23.8■■□□□ 1.4
PDLIM4-202ENST00000379018 IQCA1LA6NCM1 817 aa23.79■■□□□ 1.4
PDLIM4-202ENST00000379018 RTF1Q92541 710 aaKnown RBP23.79■■□□□ 1.4
PDLIM4-202ENST00000379018 NPC1L1Q9UHC9 1359 aa23.78■■□□□ 1.4
PDLIM4-202ENST00000379018 NIP7Q9Y221 180 aaKnown RBP eCLIP23.78■■□□□ 1.4
PDLIM4-202ENST00000379018 ZNF541Q9H0D2 1346 aa23.78■■□□□ 1.4
PDLIM4-202ENST00000379018 SNRPA1P09661 255 aaKnown RBP23.77■■□□□ 1.4
PDLIM4-202ENST00000379018 U2AF1L5P0DN76 240 aaPredicted RBP23.77■■□□□ 1.4
PDLIM4-202ENST00000379018 NPR1P16066 1061 aa23.77■■□□□ 1.4
PDLIM4-202ENST00000379018 U2AF1Q01081 240 aaKnown RBP eCLIP23.77■■□□□ 1.4
PDLIM4-202ENST00000379018 DCTN1Q14203 1278 aa23.77■■□□□ 1.4
PDLIM4-202ENST00000379018 LDHDQ86WU2 507 aa23.77■■□□□ 1.4
PDLIM4-202ENST00000379018 TAF1DQ9H5J8 278 aaPredicted RBP23.77■■□□□ 1.4
PDLIM4-202ENST00000379018 CLEC11AQ9Y240 323 aa23.77■■□□□ 1.4
PDLIM4-202ENST00000379018 NUDCQ9Y266 331 aa23.76■■□□□ 1.39
PDLIM4-202ENST00000379018 SCN4AP35499 1836 aa23.75■■□□□ 1.39
PDLIM4-202ENST00000379018 FKBP4Q02790 459 aaKnown RBP eCLIP23.75■■□□□ 1.39
PDLIM4-202ENST00000379018 CLEC4GQ6UXB4 293 aa23.75■■□□□ 1.39
PDLIM4-202ENST00000379018 CNTNAP1P78357 1384 aa23.75■■□□□ 1.39
PDLIM4-202ENST00000379018 NBPF26B4DH59 902 aa23.74■■□□□ 1.39
PDLIM4-202ENST00000379018 FOXN1O15353 648 aa23.74■■□□□ 1.39
PDLIM4-202ENST00000379018 GTF2E1P29083 439 aaPredicted RBP23.74■■□□□ 1.39
PDLIM4-202ENST00000379018 NBPF10Q6P3W6 841 aaKnown RBP23.74■■□□□ 1.39
PDLIM4-202ENST00000379018 TPTE2Q6XPS3 522 aa23.74■■□□□ 1.39
PDLIM4-202ENST00000379018 NGEFQ8N5V2 710 aa23.74■■□□□ 1.39
PDLIM4-202ENST00000379018 NBPF15Q8N660 670 aa23.74■■□□□ 1.39
PDLIM4-202ENST00000379018 C7orf43Q8WVR3 580 aa23.74■■□□□ 1.39
PDLIM4-202ENST00000379018 L3MBTL3Q96JM7 780 aaPredicted RBP23.74■■□□□ 1.39
PDLIM4-202ENST00000379018 HACL1Q9UJ83 578 aa23.72■■□□□ 1.39
PDLIM4-202ENST00000379018 RNF123Q5XPI4 1314 aa23.72■■□□□ 1.39
PDLIM4-202ENST00000379018 PASKQ96RG2 1323 aa23.72■■□□□ 1.39
PDLIM4-202ENST00000379018 HLFQ16534 295 aa23.71■■□□□ 1.39
PDLIM4-202ENST00000379018 AIDAQ96BJ3 306 aa23.71■■□□□ 1.39
PDLIM4-202ENST00000379018 MIS18AQ9NYP9 233 aa23.71■■□□□ 1.39
PDLIM4-202ENST00000379018 TMEM88BA6NKF7 163 aa23.7■■□□□ 1.38
PDLIM4-202ENST00000379018 EPHX2P34913 555 aa23.7■■□□□ 1.38
PDLIM4-202ENST00000379018 VEGFBP49765 207 aa23.7■■□□□ 1.38
PDLIM4-202ENST00000379018 RTKN2Q8IZC4 609 aa23.7■■□□□ 1.38
PDLIM4-202ENST00000379018 IARSP41252 1262 aaKnown RBP23.69■■□□□ 1.38
PDLIM4-202ENST00000379018 SYNE4Q8N205 404 aa23.69■■□□□ 1.38
PDLIM4-202ENST00000379018 MAP1SQ66K74 1059 aaPredicted RBP23.68■■□□□ 1.38
PDLIM4-202ENST00000379018 NUTM1Q86Y26 1132 aa23.68■■□□□ 1.38
PDLIM4-202ENST00000379018 KLRG2A4D1S0 409 aaPredicted RBP23.67■■□□□ 1.38
PDLIM4-202ENST00000379018 ITGBL1O95965 494 aaPredicted RBP23.67■■□□□ 1.38
PDLIM4-202ENST00000379018 ALDH1B1P30837 517 aa23.67■■□□□ 1.38
PDLIM4-202ENST00000379018 ABCC12Q96J65 1359 aa23.66■■□□□ 1.38
PDLIM4-202ENST00000379018 PPP2R1AP30153 589 aa23.66■■□□□ 1.38
PDLIM4-202ENST00000379018 GJA3Q9Y6H8 435 aa23.66■■□□□ 1.38
PDLIM4-202ENST00000379018 LAMB4A4D0S4 1761 aa23.65■■□□□ 1.38
PDLIM4-202ENST00000379018 JDP2Q8WYK2 163 aa23.65■■□□□ 1.38
PDLIM4-202ENST00000379018 TCERG1O14776 1098 aaKnown RBP23.64■■□□□ 1.37
PDLIM4-202ENST00000379018 CTCFP49711 727 aaPredicted RBP23.64■■□□□ 1.37
PDLIM4-202ENST00000379018 TAF7Q15545 349 aaPredicted RBP23.64■■□□□ 1.37
PDLIM4-202ENST00000379018 CNTROBQ8N137 903 aa23.64■■□□□ 1.37
PDLIM4-202ENST00000379018 RRP7AQ9Y3A4 280 aaKnown RBP23.64■■□□□ 1.37
PDLIM4-202ENST00000379018 GPTP24298 496 aa23.63■■□□□ 1.37
PDLIM4-202ENST00000379018 RPGRQ92834 1020 aaKnown RBP23.63■■□□□ 1.37
PDLIM4-202ENST00000379018 ABT1Q9ULW3 272 aaKnown RBP23.63■■□□□ 1.37
PDLIM4-202ENST00000379018 ADAMTSL1Q8N6G6 1762 aa23.63■■□□□ 1.37
PDLIM4-202ENST00000379018 NUP98P52948 1817 aa23.62■■□□□ 1.37
PDLIM4-202ENST00000379018 FZD9O00144 591 aa23.62■■□□□ 1.37
PDLIM4-202ENST00000379018 LBX1P52954 281 aa23.62■■□□□ 1.37
PDLIM4-202ENST00000379018 PNMA8AQ86V59 439 aaPredicted RBP23.62■■□□□ 1.37
PDLIM4-202ENST00000379018 NYXQ9GZU5 481 aa23.62■■□□□ 1.37
PDLIM4-202ENST00000379018 MYL6BP14649 208 aa23.61■■□□□ 1.37
PDLIM4-202ENST00000379018 EIF6P56537 245 aaKnown RBP23.61■■□□□ 1.37
PDLIM4-202ENST00000379018 KIF6Q6ZMV9 814 aa23.61■■□□□ 1.37
PDLIM4-202ENST00000379018 PAXIP1Q6ZW49 1069 aaPredicted RBP23.61■■□□□ 1.37
PDLIM4-202ENST00000379018 SLC51AQ86UW1 340 aa23.61■■□□□ 1.37
PDLIM4-202ENST00000379018 GPC2Q8N158 579 aa23.61■■□□□ 1.37
PDLIM4-202ENST00000379018 PRDM10Q9NQV6 1147 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms