RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 GRM8O00222 908 aa16.3■□□□□ 0.2
CCDC3-202ENST00000378839 HSPA4P34932 840 aa16.3■□□□□ 0.2
CCDC3-202ENST00000378839 MCTP1Q6DN14 999 aa16.3■□□□□ 0.2
CCDC3-202ENST00000378839 JARID2Q92833 1246 aaPredicted RBP16.3■□□□□ 0.2
CCDC3-202ENST00000378839 RASEFQ8IZ41 740 aa16.29■□□□□ 0.2
CCDC3-202ENST00000378839 XAGE3Q8WTP9 111 aa16.29■□□□□ 0.2
CCDC3-202ENST00000378839 LMBRD1Q9NUN5 540 aa16.29■□□□□ 0.2
CCDC3-202ENST00000378839 TATP17735 454 aaPredicted RBP16.28■□□□□ 0.2
CCDC3-202ENST00000378839 CWC22Q9HCG8 908 aaKnown RBP16.28■□□□□ 0.2
CCDC3-202ENST00000378839 ANAPC15P60006 121 aa16.28■□□□□ 0.2
CCDC3-202ENST00000378839 CUL4AQ13619 759 aa16.28■□□□□ 0.2
CCDC3-202ENST00000378839 FOXD4L5Q5VV16 416 aaPredicted RBP16.28■□□□□ 0.2
CCDC3-202ENST00000378839 CWC27Q6UX04 472 aaKnown RBP16.28■□□□□ 0.2
CCDC3-202ENST00000378839 FOXD4L4Q8WXT5 416 aaPredicted RBP16.28■□□□□ 0.2
CCDC3-202ENST00000378839 CHMP4AQ9BY43 222 aa16.28■□□□□ 0.2
CCDC3-202ENST00000378839 TLR7Q9NYK1 1049 aaKnown RBP16.28■□□□□ 0.2
CCDC3-202ENST00000378839 SPG7Q9UQ90 795 aa16.28■□□□□ 0.2
CCDC3-202ENST00000378839 TNS3Q68CZ2 1445 aa16.28■□□□□ 0.2
CCDC3-202ENST00000378839 NUCB2P80303 420 aa16.28■□□□□ 0.2
CCDC3-202ENST00000378839 OS9Q13438 667 aaPredicted RBP16.28■□□□□ 0.2
CCDC3-202ENST00000378839 COPS6Q7L5N1 327 aa16.28■□□□□ 0.2
CCDC3-202ENST00000378839 GRPEL1Q9HAV7 217 aa16.28■□□□□ 0.2
CCDC3-202ENST00000378839 GLI3P10071 1580 aa16.27■□□□□ 0.2
CCDC3-202ENST00000378839 SPATA31A3Q5VYP0 1347 aa16.27■□□□□ 0.19
CCDC3-202ENST00000378839 CSB-PGBD3P0DP91 1061 aa16.27■□□□□ 0.19
CCDC3-202ENST00000378839 EAF2Q96CJ1 260 aaPredicted RBP16.27■□□□□ 0.19
CCDC3-202ENST00000378839 RAD50Q92878 1312 aa16.26■□□□□ 0.19
CCDC3-202ENST00000378839 NEURL1BA8MQ27 555 aa16.26■□□□□ 0.19
CCDC3-202ENST00000378839 SNX14Q9Y5W7 946 aa16.26■□□□□ 0.19
CCDC3-202ENST00000378839 IFNL2Q8IZJ0 200 aa16.26■□□□□ 0.19
CCDC3-202ENST00000378839 LARP6Q9BRS8 491 aaKnown RBP16.26■□□□□ 0.19
CCDC3-202ENST00000378839 MRC1P22897 1456 aa16.26■□□□□ 0.19
CCDC3-202ENST00000378839 DCCP43146 1447 aa16.26■□□□□ 0.19
CCDC3-202ENST00000378839 PTH1RQ03431 593 aa16.26■□□□□ 0.19
CCDC3-202ENST00000378839 RIC3Q7Z5B4 369 aa16.26■□□□□ 0.19
CCDC3-202ENST00000378839 XIRP1Q702N8 1843 aaKnown RBP16.26■□□□□ 0.19
CCDC3-202ENST00000378839 TTC41PQ6P2S7 1318 aa16.25■□□□□ 0.19
CCDC3-202ENST00000378839 CPA1P15085 419 aa16.25■□□□□ 0.19
CCDC3-202ENST00000378839 COL9A3Q14050 684 aaPredicted RBP16.25■□□□□ 0.19
CCDC3-202ENST00000378839 SKOR2Q2VWA4 1001 aaPredicted RBP16.25■□□□□ 0.19
CCDC3-202ENST00000378839 HSP90AB4PQ58FF6 505 aa16.25■□□□□ 0.19
CCDC3-202ENST00000378839 CNTROBQ8N137 903 aa16.25■□□□□ 0.19
CCDC3-202ENST00000378839 MYD88Q99836 296 aa16.25■□□□□ 0.19
CCDC3-202ENST00000378839 RRAGDQ9NQL2 400 aaPredicted RBP16.25■□□□□ 0.19
CCDC3-202ENST00000378839 KLHL40Q2TBA0 621 aa16.25■□□□□ 0.19
CCDC3-202ENST00000378839 AACSQ86V21 672 aa16.25■□□□□ 0.19
CCDC3-202ENST00000378839 SIL1Q9H173 461 aa16.25■□□□□ 0.19
CCDC3-202ENST00000378839 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.25■□□□□ 0.19
CCDC3-202ENST00000378839 NSFL1CQ9UNZ2 370 aaKnown RBP16.25■□□□□ 0.19
CCDC3-202ENST00000378839 MCCP23508 829 aa16.24■□□□□ 0.19
CCDC3-202ENST00000378839 MRE11P49959 708 aa16.24■□□□□ 0.19
CCDC3-202ENST00000378839 GCKRQ14397 625 aa16.24■□□□□ 0.19
CCDC3-202ENST00000378839 CLASRPQ8N2M8 674 aaKnown RBP16.24■□□□□ 0.19
CCDC3-202ENST00000378839 GPT2Q8TD30 523 aa16.24■□□□□ 0.19
CCDC3-202ENST00000378839 ECHDC1Q9NTX5 307 aa16.24■□□□□ 0.19
CCDC3-202ENST00000378839 PKD1L3Q7Z443 1732 aa16.24■□□□□ 0.19
CCDC3-202ENST00000378839 DTNBO60941 627 aa16.24■□□□□ 0.19
CCDC3-202ENST00000378839 GLRX3O76003 335 aaKnown RBP16.24■□□□□ 0.19
CCDC3-202ENST00000378839 CCDC8Q9H0W5 538 aaPredicted RBP16.24■□□□□ 0.19
CCDC3-202ENST00000378839 DDX49Q9Y6V7 483 aaKnown RBP16.24■□□□□ 0.19
CCDC3-202ENST00000378839 TTC14Q96N46 770 aa16.24■□□□□ 0.19
CCDC3-202ENST00000378839 DDX58O95786 925 aaKnown RBP16.23■□□□□ 0.19
CCDC3-202ENST00000378839 DCAF5Q96JK2 942 aa16.23■□□□□ 0.19
CCDC3-202ENST00000378839 METTL22Q9BUU2 404 aaPredicted RBP16.23■□□□□ 0.19
CCDC3-202ENST00000378839 PRPF40AO75400 957 aaKnown RBP16.23■□□□□ 0.19
CCDC3-202ENST00000378839 BRINP3Q76B58 766 aa16.23■□□□□ 0.19
CCDC3-202ENST00000378839 CADPS2Q86UW7 1296 aa16.23■□□□□ 0.19
CCDC3-202ENST00000378839 ABCC6O95255 1503 aa16.22■□□□□ 0.19
CCDC3-202ENST00000378839 BRD1O95696 1058 aa16.22■□□□□ 0.19
CCDC3-202ENST00000378839 LARP1Q6PKG0 1096 aaKnown RBP16.22■□□□□ 0.19
CCDC3-202ENST00000378839 SNRPA1P09661 255 aaKnown RBP16.21■□□□□ 0.19
CCDC3-202ENST00000378839 IFIT2P09913 472 aaKnown RBP16.21■□□□□ 0.19
CCDC3-202ENST00000378839 ADCK5Q3MIX3 580 aa16.21■□□□□ 0.19
CCDC3-202ENST00000378839 ANKRD13DQ6ZTN6 518 aa16.21■□□□□ 0.19
CCDC3-202ENST00000378839 FAM227BQ96M60 508 aa16.21■□□□□ 0.19
CCDC3-202ENST00000378839 RBM27Q9P2N5 1060 aaKnown RBP16.21■□□□□ 0.19
CCDC3-202ENST00000378839 CPDO75976 1380 aa16.21■□□□□ 0.19
CCDC3-202ENST00000378839 ATP5J2-PTCD1G3V325 749 aa16.21■□□□□ 0.19
CCDC3-202ENST00000378839 PTCD1O75127 700 aaKnown RBP16.21■□□□□ 0.19
CCDC3-202ENST00000378839 MCM2P49736 904 aa16.21■□□□□ 0.19
CCDC3-202ENST00000378839 RUFY3Q7L099 469 aa16.21■□□□□ 0.19
CCDC3-202ENST00000378839 FAM43AQ8N2R8 423 aa16.21■□□□□ 0.19
CCDC3-202ENST00000378839 RFX5P48382 616 aaPredicted RBP16.2■□□□□ 0.18
CCDC3-202ENST00000378839 VSIG10Q8N0Z9 540 aa16.2■□□□□ 0.18
CCDC3-202ENST00000378839 NBPF26B4DH59 902 aa16.2■□□□□ 0.18
CCDC3-202ENST00000378839 EPB41L2O43491 1005 aaKnown RBP16.2■□□□□ 0.18
CCDC3-202ENST00000378839 NBPF14Q5TI25 921 aa16.2■□□□□ 0.18
CCDC3-202ENST00000378839 NBPF10Q6P3W6 841 aaKnown RBP16.2■□□□□ 0.18
CCDC3-202ENST00000378839 NBPF15Q8N660 670 aa16.2■□□□□ 0.18
CCDC3-202ENST00000378839 GOLGA6L22H0YM25 854 aa16.2■□□□□ 0.18
CCDC3-202ENST00000378839 LARGE1O95461 756 aa16.2■□□□□ 0.18
CCDC3-202ENST00000378839 PTMSP20962 102 aa16.2■□□□□ 0.18
CCDC3-202ENST00000378839 AK2P54819 239 aa16.2■□□□□ 0.18
CCDC3-202ENST00000378839 CAVIN1Q6NZI2 390 aaKnown RBP16.2■□□□□ 0.18
CCDC3-202ENST00000378839 ERC1Q8IUD2 1116 aa16.2■□□□□ 0.18
CCDC3-202ENST00000378839 DDX54Q8TDD1 881 aaKnown RBP16.2■□□□□ 0.18
CCDC3-202ENST00000378839 INTS4Q96HW7 963 aaKnown RBP16.2■□□□□ 0.18
CCDC3-202ENST00000378839 PKNOX2Q96KN3 472 aa16.2■□□□□ 0.18
CCDC3-202ENST00000378839 EDC3Q96F86 508 aaKnown RBP16.19■□□□□ 0.18
CCDC3-202ENST00000378839 CHGBP05060 677 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms