RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 CAVIN1Q6NZI2 390 aaKnown RBP17.28■□□□□ 0.36
TCOF1-202ENST00000377797 BECN2A8MW95 431 aa17.28■□□□□ 0.36
TCOF1-202ENST00000377797 MCM4P33991 863 aa17.28■□□□□ 0.36
TCOF1-202ENST00000377797 SETBP1Q9Y6X0 1596 aa17.27■□□□□ 0.36
TCOF1-202ENST00000377797 PLEKHM2Q8IWE5 1019 aa17.27■□□□□ 0.36
TCOF1-202ENST00000377797 RAI14Q9P0K7 980 aa17.27■□□□□ 0.36
TCOF1-202ENST00000377797 WDR33Q9C0J8 1336 aaKnown RBP17.27■□□□□ 0.36
TCOF1-202ENST00000377797 ZNF496Q96IT1 587 aaPredicted RBP17.27■□□□□ 0.36
TCOF1-202ENST00000377797 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.27■□□□□ 0.36
TCOF1-202ENST00000377797 SNRKQ9NRH2 765 aa17.27■□□□□ 0.36
TCOF1-202ENST00000377797 KCNQ3O43525 872 aa17.27■□□□□ 0.35
TCOF1-202ENST00000377797 ATP6V1AP38606 617 aa17.27■□□□□ 0.35
TCOF1-202ENST00000377797 ZSCAN31Q96LW9 406 aaPredicted RBP17.27■□□□□ 0.35
TCOF1-202ENST00000377797 LARP1BQ659C4 914 aaKnown RBP17.26■□□□□ 0.35
TCOF1-202ENST00000377797 MTMR7Q9Y216 660 aa17.26■□□□□ 0.35
TCOF1-202ENST00000377797 GOLGA6L19H0YKK7 550 aa17.26■□□□□ 0.35
TCOF1-202ENST00000377797 GOLIM4O00461 696 aa17.26■□□□□ 0.35
TCOF1-202ENST00000377797 MBD3O95983 291 aa17.26■□□□□ 0.35
TCOF1-202ENST00000377797 CCDC73Q6ZRK6 1079 aa17.26■□□□□ 0.35
TCOF1-202ENST00000377797 SEC24BO95487 1268 aa17.25■□□□□ 0.35
TCOF1-202ENST00000377797 KLHL34Q8N239 644 aa17.25■□□□□ 0.35
TCOF1-202ENST00000377797 AIDAQ96BJ3 306 aa17.25■□□□□ 0.35
TCOF1-202ENST00000377797 TDO2P48775 406 aa17.25■□□□□ 0.35
TCOF1-202ENST00000377797 U3KPZ7 1027 aaPredicted RBP17.24■□□□□ 0.35
TCOF1-202ENST00000377797 CDK12Q9NYV4 1490 aaPredicted RBP17.24■□□□□ 0.35
TCOF1-202ENST00000377797 AGLP35573 1532 aa17.24■□□□□ 0.35
TCOF1-202ENST00000377797 IMMTQ16891 758 aaKnown RBP17.23■□□□□ 0.35
TCOF1-202ENST00000377797 CREBRFQ8IUR6 639 aa17.23■□□□□ 0.35
TCOF1-202ENST00000377797 ABCC4O15439 1325 aa17.23■□□□□ 0.35
TCOF1-202ENST00000377797 SLC3A2P08195 630 aaKnown RBP17.23■□□□□ 0.35
TCOF1-202ENST00000377797 VPS53Q5VIR6 699 aa17.23■□□□□ 0.35
TCOF1-202ENST00000377797 OTUD7AQ8TE49 926 aaPredicted RBP17.23■□□□□ 0.35
TCOF1-202ENST00000377797 PHF23Q9BUL5 403 aaPredicted RBP17.23■□□□□ 0.35
TCOF1-202ENST00000377797 CLTCQ00610 1675 aaKnown RBP17.22■□□□□ 0.35
TCOF1-202ENST00000377797 NBPF7P0C2Y1 421 aaPredicted RBP17.22■□□□□ 0.35
TCOF1-202ENST00000377797 SLC5A1P13866 664 aa17.22■□□□□ 0.35
TCOF1-202ENST00000377797 DDX46Q7L014 1031 aaKnown RBP17.22■□□□□ 0.35
TCOF1-202ENST00000377797 BICC1Q9H694 974 aaKnown RBP17.22■□□□□ 0.35
TCOF1-202ENST00000377797 SMARCC1Q92922 1105 aaPredicted RBP17.22■□□□□ 0.35
TCOF1-202ENST00000377797 GIGYF1O75420 1035 aaPredicted RBP17.22■□□□□ 0.35
TCOF1-202ENST00000377797 CAVIN4Q5BKX8 364 aa17.22■□□□□ 0.35
TCOF1-202ENST00000377797 CCDC83Q8IWF9 413 aa17.22■□□□□ 0.35
TCOF1-202ENST00000377797 DNAJC5Q9H3Z4 198 aa17.22■□□□□ 0.35
TCOF1-202ENST00000377797 NEXMIFQ5QGS0 1516 aa17.22■□□□□ 0.35
TCOF1-202ENST00000377797 A1BGP04217 495 aa17.22■□□□□ 0.35
TCOF1-202ENST00000377797 PHKG2P15735 406 aa17.22■□□□□ 0.35
TCOF1-202ENST00000377797 ESYT1Q9BSJ8 1104 aa17.22■□□□□ 0.35
TCOF1-202ENST00000377797 QRICH2Q9H0J4 1663 aa17.21■□□□□ 0.35
TCOF1-202ENST00000377797 CEBPZQ03701 1054 aaKnown RBP17.21■□□□□ 0.35
TCOF1-202ENST00000377797 DZIP3Q86Y13 1208 aaKnown RBP17.21■□□□□ 0.35
TCOF1-202ENST00000377797 LARP6Q9BRS8 491 aaKnown RBP17.21■□□□□ 0.35
TCOF1-202ENST00000377797 TULP4Q9NRJ4 1543 aa17.21■□□□□ 0.35
TCOF1-202ENST00000377797 PNMA6EA0A0J9YXQ4 647 aa17.21■□□□□ 0.35
TCOF1-202ENST00000377797 XBP1P17861 261 aa17.21■□□□□ 0.35
TCOF1-202ENST00000377797 ATP2B1P20020 1258 aa17.21■□□□□ 0.35
TCOF1-202ENST00000377797 IL15P40933 162 aaPredicted RBP17.21■□□□□ 0.35
TCOF1-202ENST00000377797 SF3B2Q13435 895 aaKnown RBP17.21■□□□□ 0.35
TCOF1-202ENST00000377797 RNF214Q8ND24 703 aa17.21■□□□□ 0.35
TCOF1-202ENST00000377797 ZNF853P0CG23 659 aa17.2■□□□□ 0.34
TCOF1-202ENST00000377797 METTL22Q9BUU2 404 aaPredicted RBP17.2■□□□□ 0.34
TCOF1-202ENST00000377797 MAP3K12Q12852 859 aa17.2■□□□□ 0.34
TCOF1-202ENST00000377797 LAMC1P11047 1609 aa17.2■□□□□ 0.34
TCOF1-202ENST00000377797 ANKARQ7Z5J8 1434 aa17.2■□□□□ 0.34
TCOF1-202ENST00000377797 SASS6Q6UVJ0 657 aa17.2■□□□□ 0.34
TCOF1-202ENST00000377797 CDC5LQ99459 802 aaKnown RBP17.2■□□□□ 0.34
TCOF1-202ENST00000377797 MRE11P49959 708 aa17.2■□□□□ 0.34
TCOF1-202ENST00000377797 SDF4Q9BRK5 362 aa17.19■□□□□ 0.34
TCOF1-202ENST00000377797 PLBD2Q8NHP8 589 aa17.19■□□□□ 0.34
TCOF1-202ENST00000377797 KIF24Q5T7B8 1368 aa17.19■□□□□ 0.34
TCOF1-202ENST00000377797 DDX11Q96FC9 970 aa17.19■□□□□ 0.34
TCOF1-202ENST00000377797 AK7Q96M32 723 aa17.19■□□□□ 0.34
TCOF1-202ENST00000377797 LIMCH1Q9UPQ0 1083 aa17.19■□□□□ 0.34
TCOF1-202ENST00000377797 RTL1A6NKG5 1358 aa17.19■□□□□ 0.34
TCOF1-202ENST00000377797 DIP2BQ9P265 1576 aa17.19■□□□□ 0.34
TCOF1-202ENST00000377797 KRT85P78386 507 aa17.18■□□□□ 0.34
TCOF1-202ENST00000377797 PTPRMP28827 1452 aa17.18■□□□□ 0.34
TCOF1-202ENST00000377797 NIP7Q9Y221 180 aaKnown RBP eCLIP17.18■□□□□ 0.34
TCOF1-202ENST00000377797 USP16Q9Y5T5 823 aa17.18■□□□□ 0.34
TCOF1-202ENST00000377797 CCDC69A6NI79 296 aa17.18■□□□□ 0.34
TCOF1-202ENST00000377797 HMGB2P26583 209 aaKnown RBP17.18■□□□□ 0.34
TCOF1-202ENST00000377797 ATP2B3Q16720 1220 aa17.18■□□□□ 0.34
TCOF1-202ENST00000377797 ERBB3P21860 1342 aa17.18■□□□□ 0.34
TCOF1-202ENST00000377797 NUP133Q8WUM0 1156 aa17.17■□□□□ 0.34
TCOF1-202ENST00000377797 USP44Q9H0E7 712 aa17.17■□□□□ 0.34
TCOF1-202ENST00000377797 ARHGEF40Q8TER5 1519 aa17.17■□□□□ 0.34
TCOF1-202ENST00000377797 NAPBQ9H115 298 aa17.17■□□□□ 0.34
TCOF1-202ENST00000377797 ANKIB1Q9P2G1 1089 aa17.17■□□□□ 0.34
TCOF1-202ENST00000377797 TTC41PQ6P2S7 1318 aa17.17■□□□□ 0.34
TCOF1-202ENST00000377797 FERMT3Q86UX7 667 aa17.17■□□□□ 0.34
TCOF1-202ENST00000377797 UBAC1Q9BSL1 405 aa17.17■□□□□ 0.34
TCOF1-202ENST00000377797 ZNF335Q9H4Z2 1342 aaPredicted RBP17.17■□□□□ 0.34
TCOF1-202ENST00000377797 BRMS1Q9HCU9 246 aa17.17■□□□□ 0.34
TCOF1-202ENST00000377797 DNAJC10Q8IXB1 793 aa17.17■□□□□ 0.34
TCOF1-202ENST00000377797 RFC4P35249 363 aa17.16■□□□□ 0.34
TCOF1-202ENST00000377797 NASPP49321 788 aaPredicted RBP17.16■□□□□ 0.34
TCOF1-202ENST00000377797 PRIM1P49642 420 aaKnown RBP17.16■□□□□ 0.34
TCOF1-202ENST00000377797 TRIM22Q8IYM9 498 aa17.16■□□□□ 0.34
TCOF1-202ENST00000377797 CDCA7Q9BWT1 371 aaPredicted RBP17.16■□□□□ 0.34
TCOF1-202ENST00000377797 CCDC152Q4G0S7 254 aa17.16■□□□□ 0.34
TCOF1-202ENST00000377797 SH2B1Q9NRF2 756 aaPredicted RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms