RNA–Protein interactions for RNA: ENST00000375360.7

PTPDC1-202, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,517 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-202ENST00000375360 BRPF3Q9ULD4 1205 aa21.23■□□□□ 0.99
PTPDC1-202ENST00000375360 C6orf229H3BNL8 230 aa21.23■□□□□ 0.99
PTPDC1-202ENST00000375360 SMC5Q8IY18 1101 aa21.23■□□□□ 0.99
PTPDC1-202ENST00000375360 HELBQ8NG08 1087 aaPredicted RBP21.23■□□□□ 0.99
PTPDC1-202ENST00000375360 SEC24BO95487 1268 aa21.23■□□□□ 0.99
PTPDC1-202ENST00000375360 SSFA2P28290 1259 aa21.22■□□□□ 0.99
PTPDC1-202ENST00000375360 CCAR2Q8N163 923 aaKnown RBP21.22■□□□□ 0.99
PTPDC1-202ENST00000375360 NIP7Q9Y221 180 aaKnown RBP eCLIP21.22■□□□□ 0.99
PTPDC1-202ENST00000375360 CCT2P78371 535 aaKnown RBP21.22■□□□□ 0.99
PTPDC1-202ENST00000375360 SBNO2Q9Y2G9 1366 aa21.22■□□□□ 0.99
PTPDC1-202ENST00000375360 TPM1P09493 284 aa21.22■□□□□ 0.99
PTPDC1-202ENST00000375360 C8orf34Q49A92 452 aa21.22■□□□□ 0.99
PTPDC1-202ENST00000375360 NBPF5PQ86XG9 351 aaPredicted RBP21.22■□□□□ 0.99
PTPDC1-202ENST00000375360 A1BGP04217 495 aa21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 OTUD7AQ8TE49 926 aaPredicted RBP21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 PRDM15P57071 1507 aaPredicted RBP21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 ZNF213O14771 459 aa21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 PREX2Q70Z35 1606 aa21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 ERVK-7P63135 1459 aa21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 KCNQ3O43525 872 aa21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 RAB11FIP4Q86YS3 637 aa21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 SPATA32Q96LK8 384 aa21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 TRIM5Q9C035 493 aa21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 DZIP3Q86Y13 1208 aaKnown RBP21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 DZIP1Q86YF9 867 aaKnown RBP21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 RPGRQ92834 1020 aaKnown RBP21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 ROBO2Q9HCK4 1378 aa21.21■□□□□ 0.99
PTPDC1-202ENST00000375360 KLHDC4Q8TBB5 520 aa21.2■□□□□ 0.98
PTPDC1-202ENST00000375360 BCL11BQ9C0K0 894 aaPredicted RBP21.2■□□□□ 0.98
PTPDC1-202ENST00000375360 USP5P45974 858 aa21.2■□□□□ 0.98
PTPDC1-202ENST00000375360 ANKRD20A12PQ8NF67 263 aa21.2■□□□□ 0.98
PTPDC1-202ENST00000375360 IL17REQ8NFR9 667 aa21.2■□□□□ 0.98
PTPDC1-202ENST00000375360 CDC5LQ99459 802 aaKnown RBP21.2■□□□□ 0.98
PTPDC1-202ENST00000375360 SLC4A8Q2Y0W8 1093 aa21.2■□□□□ 0.98
PTPDC1-202ENST00000375360 ZNF496Q96IT1 587 aaPredicted RBP21.2■□□□□ 0.98
PTPDC1-202ENST00000375360 GDPD2Q9HCC8 539 aa21.2■□□□□ 0.98
PTPDC1-202ENST00000375360 RANBP6O60518 1105 aaKnown RBP21.19■□□□□ 0.98
PTPDC1-202ENST00000375360 LIMCH1Q9UPQ0 1083 aa21.19■□□□□ 0.98
PTPDC1-202ENST00000375360 PRR36Q9H6K5 1346 aa21.19■□□□□ 0.98
PTPDC1-202ENST00000375360 CCDC43Q96MW1 224 aaKnown RBP21.19■□□□□ 0.98
PTPDC1-202ENST00000375360 FAM89AQ96GI7 184 aa21.19■□□□□ 0.98
PTPDC1-202ENST00000375360 ATP2B3Q16720 1220 aa21.18■□□□□ 0.98
PTPDC1-202ENST00000375360 LRRC2Q9BYS8 371 aa21.18■□□□□ 0.98
PTPDC1-202ENST00000375360 TSPY26PQ9H489 355 aa21.18■□□□□ 0.98
PTPDC1-202ENST00000375360 TPM2P07951 284 aa21.17■□□□□ 0.98
PTPDC1-202ENST00000375360 BICC1Q9H694 974 aaKnown RBP21.17■□□□□ 0.98
PTPDC1-202ENST00000375360 USP19O94966 1318 aa21.17■□□□□ 0.98
PTPDC1-202ENST00000375360 PLEKHM2Q8IWE5 1019 aa21.17■□□□□ 0.98
PTPDC1-202ENST00000375360 POLR3DP05423 398 aaPredicted RBP21.17■□□□□ 0.98
PTPDC1-202ENST00000375360 NBPF7P0C2Y1 421 aaPredicted RBP21.17■□□□□ 0.98
PTPDC1-202ENST00000375360 OLFM4Q6UX06 510 aa21.17■□□□□ 0.98
PTPDC1-202ENST00000375360 MKNK2Q9HBH9 465 aa21.17■□□□□ 0.98
PTPDC1-202ENST00000375360 TNMDQ9H2S6 317 aa21.16■□□□□ 0.98
PTPDC1-202ENST00000375360 HOMER1Q86YM7 354 aa21.16■□□□□ 0.98
PTPDC1-202ENST00000375360 PCDH11XQ9BZA7 1347 aa21.16■□□□□ 0.98
PTPDC1-202ENST00000375360 PCDH11YQ9BZA8 1340 aa21.16■□□□□ 0.98
PTPDC1-202ENST00000375360 JMYQ8N9B5 988 aa21.15■□□□□ 0.98
PTPDC1-202ENST00000375360 TNPO1Q92973 898 aaKnown RBP21.15■□□□□ 0.98
PTPDC1-202ENST00000375360 SETDB2Q96T68 719 aa21.15■□□□□ 0.98
PTPDC1-202ENST00000375360 PRIM1P49642 420 aaKnown RBP21.15■□□□□ 0.98
PTPDC1-202ENST00000375360 ESYT1Q9BSJ8 1104 aa21.15■□□□□ 0.98
PTPDC1-202ENST00000375360 CDKL5O76039 1030 aa21.14■□□□□ 0.98
PTPDC1-202ENST00000375360 CCDC144CPQ8IYA2 1237 aa21.14■□□□□ 0.98
PTPDC1-202ENST00000375360 NAT10Q9H0A0 1025 aaKnown RBP21.14■□□□□ 0.98
PTPDC1-202ENST00000375360 TFIP11Q9UBB9 837 aaKnown RBP21.14■□□□□ 0.97
PTPDC1-202ENST00000375360 EFCAB6Q5THR3 1501 aa21.14■□□□□ 0.97
PTPDC1-202ENST00000375360 TMEM94Q12767 1356 aa21.14■□□□□ 0.97
PTPDC1-202ENST00000375360 CCDC152Q4G0S7 254 aa21.14■□□□□ 0.97
PTPDC1-202ENST00000375360 SPC24Q8NBT2 197 aa21.14■□□□□ 0.97
PTPDC1-202ENST00000375360 IL15P40933 162 aaPredicted RBP21.14■□□□□ 0.97
PTPDC1-202ENST00000375360 TIMM10P62072 90 aa21.14■□□□□ 0.97
PTPDC1-202ENST00000375360 NECAB1Q8N987 351 aa21.14■□□□□ 0.97
PTPDC1-202ENST00000375360 IFIT3O14879 490 aaKnown RBP21.13■□□□□ 0.97
PTPDC1-202ENST00000375360 PDILTQ8N807 584 aa21.13■□□□□ 0.97
PTPDC1-202ENST00000375360 WWC3Q9ULE0 1092 aa21.13■□□□□ 0.97
PTPDC1-202ENST00000375360 SLC52A2Q9HAB3 445 aa21.13■□□□□ 0.97
PTPDC1-202ENST00000375360 PNMA6EA0A0J9YXQ4 647 aa21.13■□□□□ 0.97
PTPDC1-202ENST00000375360 IRS4O14654 1257 aaPredicted RBP21.13■□□□□ 0.97
PTPDC1-202ENST00000375360 CFAP45Q9UL16 551 aa21.13■□□□□ 0.97
PTPDC1-202ENST00000375360 SOS1Q07889 1333 aaPredicted RBP21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 TFCP2Q12800 502 aa21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 NLRP3Q96P20 1036 aa21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 DNAJC10Q8IXB1 793 aa21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 CDC42BPAQ5VT25 1732 aa21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 IPO7O95373 1038 aaKnown RBP21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 BRPF1P55201 1214 aaPredicted RBP21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 CAMK4Q16566 473 aa21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 SMARCC1Q92922 1105 aaPredicted RBP21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 SYCE3A1L190 88 aa21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 EIF4A1P60842 406 aaKnown RBP21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 SOGA3Q5TF21 947 aa21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 NEK1Q96PY6 1258 aa21.12■□□□□ 0.97
PTPDC1-202ENST00000375360 MPHOSPH10O00566 681 aaKnown RBP21.11■□□□□ 0.97
PTPDC1-202ENST00000375360 ZNF622Q969S3 477 aaKnown RBP eCLIP21.11■□□□□ 0.97
PTPDC1-202ENST00000375360 KDM5DQ9BY66 1539 aa21.11■□□□□ 0.97
PTPDC1-202ENST00000375360 ANKRD18AQ8IVF6 992 aa21.11■□□□□ 0.97
PTPDC1-202ENST00000375360 SH2B1Q9NRF2 756 aaPredicted RBP21.11■□□□□ 0.97
PTPDC1-202ENST00000375360 RBM8AQ9Y5S9 174 aaKnown RBP21.11■□□□□ 0.97
PTPDC1-202ENST00000375360 USP16Q9Y5T5 823 aa21.11■□□□□ 0.97
PTPDC1-202ENST00000375360 GOLGA8BA8MQT2 603 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms