RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 TDRD12Q587J7 1177 aaKnown RBP7.46□□□□□ -1.22
UPF2-201ENST00000356352 HOMER2Q9NSB8 354 aa7.46□□□□□ -1.22
UPF2-201ENST00000356352 HMG20BQ9P0W2 317 aa7.46□□□□□ -1.22
UPF2-201ENST00000356352 TRMT112Q9UI30 125 aaKnown RBP7.46□□□□□ -1.22
UPF2-201ENST00000356352 LIMCH1Q9UPQ0 1083 aa7.46□□□□□ -1.22
UPF2-201ENST00000356352 NKTRP30414 1462 aaKnown RBP7.46□□□□□ -1.22
UPF2-201ENST00000356352 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.46□□□□□ -1.22
UPF2-201ENST00000356352 SPDYE4A6NLX3 237 aa7.46□□□□□ -1.22
UPF2-201ENST00000356352 ESPNB1AK53 854 aa7.46□□□□□ -1.22
UPF2-201ENST00000356352 IFIT3O14879 490 aaKnown RBP7.46□□□□□ -1.22
UPF2-201ENST00000356352 BMP15O95972 392 aa7.46□□□□□ -1.22
UPF2-201ENST00000356352 TTC12Q9H892 705 aaPredicted RBP7.46□□□□□ -1.22
UPF2-201ENST00000356352 CLIP2Q9UDT6 1046 aa7.46□□□□□ -1.22
UPF2-201ENST00000356352 SYCE3A1L190 88 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 RRP9O43818 475 aaKnown RBP7.45□□□□□ -1.22
UPF2-201ENST00000356352 MTIF2P46199 727 aaKnown RBP7.45□□□□□ -1.22
UPF2-201ENST00000356352 TTLL12Q14166 644 aaPredicted RBP7.45□□□□□ -1.22
UPF2-201ENST00000356352 CAMK4Q16566 473 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 SPECC1LQ69YQ0 1117 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 DNAAF4Q8WXU2 420 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.45□□□□□ -1.22
UPF2-201ENST00000356352 PLVAPQ9BX97 442 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 DBF4Q9UBU7 674 aaPredicted RBP7.45□□□□□ -1.22
UPF2-201ENST00000356352 FSD2A1L4K1 749 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 POLR3GO15318 223 aaPredicted RBP7.45□□□□□ -1.22
UPF2-201ENST00000356352 CCDC40Q4G0X9 1142 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 C6orf163Q5TEZ5 329 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 ERMNQ8TAM6 284 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 SSX2IPQ9Y2D8 614 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 COMMD10Q9Y6G5 202 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 CCDC175P0C221 793 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 PPM1FP49593 454 aaPredicted RBP7.45□□□□□ -1.22
UPF2-201ENST00000356352 PIP4K2BP78356 416 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 KAT14Q9H8E8 782 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 KLHL10Q6JEL2 608 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 EXOC6BQ9Y2D4 811 aa7.45□□□□□ -1.22
UPF2-201ENST00000356352 UQCRFS1P1P0C7P4 283 aa7.44□□□□□ -1.22
UPF2-201ENST00000356352 ACTN2P35609 894 aa7.44□□□□□ -1.22
UPF2-201ENST00000356352 PPP1R42Q7Z4L9 355 aa7.44□□□□□ -1.22
UPF2-201ENST00000356352 SPATA24Q86W54 205 aa7.44□□□□□ -1.22
UPF2-201ENST00000356352 MYO1BO43795 1136 aa7.44□□□□□ -1.22
UPF2-201ENST00000356352 BOLA2Q9H3K6 86 aa7.44□□□□□ -1.22
UPF2-201ENST00000356352 TIAM1Q13009 1591 aa7.44□□□□□ -1.22
UPF2-201ENST00000356352 URI1O94763 535 aaPredicted RBP7.44□□□□□ -1.22
UPF2-201ENST00000356352 PRKCSHP14314 528 aaPredicted RBP7.44□□□□□ -1.22
UPF2-201ENST00000356352 IBSPP21815 317 aaPredicted RBP7.44□□□□□ -1.22
UPF2-201ENST00000356352 PRPHP41219 470 aa7.44□□□□□ -1.22
UPF2-201ENST00000356352 ZC3H6P61129 1189 aaKnown RBP7.44□□□□□ -1.22
UPF2-201ENST00000356352 CCDC174Q6PII3 467 aa7.44□□□□□ -1.22
UPF2-201ENST00000356352 TBC1D5Q92609 795 aa7.44□□□□□ -1.22
UPF2-201ENST00000356352 CCDC85AQ96PX6 553 aaPredicted RBP7.44□□□□□ -1.22
UPF2-201ENST00000356352 TBCAO75347 108 aaKnown RBP7.44□□□□□ -1.22
UPF2-201ENST00000356352 MCM5P33992 734 aa7.44□□□□□ -1.22
UPF2-201ENST00000356352 ZGPATQ8N5A5 531 aaKnown RBP7.44□□□□□ -1.22
UPF2-201ENST00000356352 GTPBP4Q9BZE4 634 aaKnown RBP7.44□□□□□ -1.22
UPF2-201ENST00000356352 BRPF3Q9ULD4 1205 aa7.44□□□□□ -1.22
UPF2-201ENST00000356352 IARSP41252 1262 aaKnown RBP7.43□□□□□ -1.22
UPF2-201ENST00000356352 SYCP3Q8IZU3 236 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 CAMSAP2Q08AD1 1489 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 PIK3R4Q99570 1358 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 ST5P78524 1137 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 CKAP4Q07065 602 aaKnown RBP7.43□□□□□ -1.22
UPF2-201ENST00000356352 UVSSAQ2YD98 709 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 DDX46Q7L014 1031 aaKnown RBP7.43□□□□□ -1.22
UPF2-201ENST00000356352 FSIP1Q8NA03 581 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 CTAGE1Q96RT6 745 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 IKBKGQ9Y6K9 419 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 NCOA7Q8NI08 942 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 CRNKL1Q9BZJ0 848 aaKnown RBP7.43□□□□□ -1.22
UPF2-201ENST00000356352 CWC25Q9NXE8 425 aaPredicted RBP7.43□□□□□ -1.22
UPF2-201ENST00000356352 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.43□□□□□ -1.221e-7■■■□□ 18.5
UPF2-201ENST00000356352 SPECC1Q5M775 1068 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 MFSD6Q6ZSS7 791 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 CEP112Q8N8E3 955 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 ZSCAN16Q9H4T2 348 aaPredicted RBP7.43□□□□□ -1.22
UPF2-201ENST00000356352 SNAPC4Q5SXM2 1469 aa7.43□□□□□ -1.22
UPF2-201ENST00000356352 MACROD2A1Z1Q3 448 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 TMCO5BA8MYB1 307 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 PRC1O43663 620 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 UBE4AQ14139 1066 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 TMEM67Q5HYA8 995 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 FERMT3Q86UX7 667 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 SMARCC1Q92922 1105 aaPredicted RBP7.42□□□□□ -1.22
UPF2-201ENST00000356352 KRT23Q9C075 422 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 EXOC5O00471 708 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 STX6O43752 255 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 WDR78Q5VTH9 848 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 MCM10Q7L590 875 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 ECHDC1Q9NTX5 307 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 EXOC1Q9NV70 894 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 KIF14Q15058 1648 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 B4DLN1 442 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 KIF4AO95239 1232 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 NBPF7P0C2Y1 421 aaPredicted RBP7.42□□□□□ -1.22
UPF2-201ENST00000356352 MRPL12P52815 198 aaKnown RBP7.42□□□□□ -1.22
UPF2-201ENST00000356352 TMTC2Q8N394 836 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 UTP14AQ9BVJ6 771 aaKnown RBP7.42□□□□□ -1.22
UPF2-201ENST00000356352 CALCOCO1Q9P1Z2 691 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 RASAL2Q9UJF2 1139 aa7.42□□□□□ -1.22
UPF2-201ENST00000356352 PHF8Q9UPP1 1060 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms