RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 TRIM46Q7Z4K8 759 aa10.2□□□□□ -0.78
VPS13A-201ENST00000355766 MPNDQ8N594 471 aa10.2□□□□□ -0.78
VPS13A-201ENST00000355766 TSC1Q92574 1164 aa10.2□□□□□ -0.78
VPS13A-201ENST00000355766 FOXJ1Q92949 421 aa10.2□□□□□ -0.78
VPS13A-201ENST00000355766 PLEKHG3A1L390 1219 aa10.19□□□□□ -0.78
VPS13A-201ENST00000355766 SEPT12Q8IYM1 358 aa10.19□□□□□ -0.78
VPS13A-201ENST00000355766 LRPPRCP42704 1394 aaKnown RBP10.18□□□□□ -0.78
VPS13A-201ENST00000355766 BAG6P46379 1132 aa10.18□□□□□ -0.78
VPS13A-201ENST00000355766 XPCQ01831 940 aaPredicted RBP10.18□□□□□ -0.78
VPS13A-201ENST00000355766 ESCO1Q5FWF5 840 aa10.18□□□□□ -0.78
VPS13A-201ENST00000355766 RTL5Q5HYW3 569 aaPredicted RBP10.18□□□□□ -0.78
VPS13A-201ENST00000355766 PLCH1Q4KWH8 1693 aa10.18□□□□□ -0.78
VPS13A-201ENST00000355766 NNTQ13423 1086 aa10.17□□□□□ -0.78
VPS13A-201ENST00000355766 VPS72Q15906 364 aa10.17□□□□□ -0.78
VPS13A-201ENST00000355766 KRT27Q7Z3Y8 459 aa10.17□□□□□ -0.78
VPS13A-201ENST00000355766 FAM174AQ8TBP5 190 aa10.17□□□□□ -0.78
VPS13A-201ENST00000355766 CCDC144AA2RUR9 1427 aa10.16□□□□□ -0.78
VPS13A-201ENST00000355766 DISP2A7MBM2 1401 aa10.16□□□□□ -0.78
VPS13A-201ENST00000355766 NAIPQ13075 1403 aa10.16□□□□□ -0.78
VPS13A-201ENST00000355766 NWD2Q9ULI1 1742 aa10.16□□□□□ -0.78
VPS13A-201ENST00000355766 KIF1AQ12756 1690 aa10.16□□□□□ -0.78
VPS13A-201ENST00000355766 SPATA31A3Q5VYP0 1347 aa10.16□□□□□ -0.78
VPS13A-201ENST00000355766 FOXO3O43524 673 aa10.16□□□□□ -0.78
VPS13A-201ENST00000355766 POLR3EQ9NVU0 708 aa10.16□□□□□ -0.78
VPS13A-201ENST00000355766 TERTO14746 1132 aaKnown RBP10.15□□□□□ -0.78
VPS13A-201ENST00000355766 CLK2P49760 499 aaKnown RBP10.15□□□□□ -0.78
VPS13A-201ENST00000355766 C4orf48Q5BLP8 95 aa10.15□□□□□ -0.78
VPS13A-201ENST00000355766 LCE2CQ5TA81 110 aa10.15□□□□□ -0.78
VPS13A-201ENST00000355766 RGPD1P0DJD0 1748 aa10.15□□□□□ -0.78
VPS13A-201ENST00000355766 TNS3Q68CZ2 1445 aa10.15□□□□□ -0.79
VPS13A-201ENST00000355766 ABCA3Q99758 1704 aa10.14□□□□□ -0.79
VPS13A-201ENST00000355766 ARID5BQ14865 1188 aa10.14□□□□□ -0.79
VPS13A-201ENST00000355766 CDK15Q96Q40 435 aa10.14□□□□□ -0.79
VPS13A-201ENST00000355766 RSPH6AQ9H0K4 717 aa10.14□□□□□ -0.79
VPS13A-201ENST00000355766 TECPR2O15040 1411 aa10.14□□□□□ -0.79
VPS13A-201ENST00000355766 ADGRB2O60241 1585 aa10.14□□□□□ -0.79
VPS13A-201ENST00000355766 ADH1CP00326 375 aa10.13□□□□□ -0.79
VPS13A-201ENST00000355766 YY1P25490 414 aa10.13□□□□□ -0.79
VPS13A-201ENST00000355766 R3HDM1Q15032 1099 aaKnown RBP10.13□□□□□ -0.79
VPS13A-201ENST00000355766 AGERQ15109 404 aa10.13□□□□□ -0.79
VPS13A-201ENST00000355766 KLF16Q9BXK1 252 aaPredicted RBP10.13□□□□□ -0.79
VPS13A-201ENST00000355766 TNS1Q9HBL0 1735 aaKnown RBP10.13□□□□□ -0.79
VPS13A-201ENST00000355766 TIMP2P16035 220 aa10.12□□□□□ -0.79
VPS13A-201ENST00000355766 WDR4P57081 412 aaKnown RBP10.12□□□□□ -0.79
VPS13A-201ENST00000355766 BPHLQ86WA6 291 aaPredicted RBP10.12□□□□□ -0.79
VPS13A-201ENST00000355766 HELBQ8NG08 1087 aaPredicted RBP10.12□□□□□ -0.79
VPS13A-201ENST00000355766 CCDC9Q9Y3X0 531 aaKnown RBP10.12□□□□□ -0.79
VPS13A-201ENST00000355766 NRAPQ86VF7 1730 aa10.12□□□□□ -0.79
VPS13A-201ENST00000355766 FMN2Q9NZ56 1722 aa10.12□□□□□ -0.79
VPS13A-201ENST00000355766 KIF1BO60333 1816 aa10.12□□□□□ -0.79
VPS13A-201ENST00000355766 CCER1Q8TC90 406 aaPredicted RBP10.11□□□□□ -0.79
VPS13A-201ENST00000355766 ZFP42Q96MM3 310 aa10.11□□□□□ -0.79
VPS13A-201ENST00000355766 RAB3GAP2Q9H2M9 1393 aa10.11□□□□□ -0.79
VPS13A-201ENST00000355766 ARMC2Q8NEN0 867 aa10.1□□□□□ -0.79
VPS13A-201ENST00000355766 KNDC1Q76NI1 1749 aa10.1□□□□□ -0.79
VPS13A-201ENST00000355766 RPGRIP1LQ68CZ1 1315 aa10.09□□□□□ -0.79
VPS13A-201ENST00000355766 THSD7AQ9UPZ6 1657 aa10.09□□□□□ -0.79
VPS13A-201ENST00000355766 PPLO60437 1756 aa10.09□□□□□ -0.79
VPS13A-201ENST00000355766 WIPF1O43516 503 aa10.09□□□□□ -0.79
VPS13A-201ENST00000355766 GRM5P41594 1212 aa10.09□□□□□ -0.79
VPS13A-201ENST00000355766 MRPL14Q6P1L8 145 aaKnown RBP10.09□□□□□ -0.79
VPS13A-201ENST00000355766 ARHGEF10O15013 1369 aa10.09□□□□□ -0.79
VPS13A-201ENST00000355766 DHX57Q6P158 1386 aaKnown RBP10.09□□□□□ -0.79
VPS13A-201ENST00000355766 NR3C2P08235 984 aa10.08□□□□□ -0.8
VPS13A-201ENST00000355766 CTDSPL2Q05D32 466 aa10.08□□□□□ -0.8
VPS13A-201ENST00000355766 KRT28Q7Z3Y7 464 aa10.08□□□□□ -0.8
VPS13A-201ENST00000355766 GPBP1L1Q9HC44 474 aaPredicted RBP10.08□□□□□ -0.8
VPS13A-201ENST00000355766 SBNO1A3KN83 1393 aa10.08□□□□□ -0.8
VPS13A-201ENST00000355766 PLEKHH1Q9ULM0 1364 aa10.08□□□□□ -0.8
VPS13A-201ENST00000355766 NRXN1Q9ULB1 1477 aa10.08□□□□□ -0.8
VPS13A-201ENST00000355766 PARD3Q8TEW0 1356 aa10.07□□□□□ -0.8
VPS13A-201ENST00000355766 NR5A1Q13285 461 aa10.07□□□□□ -0.8
VPS13A-201ENST00000355766 SH3BP5LQ7L8J4 393 aa10.07□□□□□ -0.8
VPS13A-201ENST00000355766 SH3RF1Q7Z6J0 888 aa10.07□□□□□ -0.8
VPS13A-201ENST00000355766 C1QTNF2Q9BXJ5 285 aa10.07□□□□□ -0.8
VPS13A-201ENST00000355766 NXF1Q9UBU9 619 aaKnown RBP10.07□□□□□ -0.8
VPS13A-201ENST00000355766 RREB1Q92766 1687 aa10.06□□□□□ -0.8
VPS13A-201ENST00000355766 ABCC11Q96J66 1382 aa10.06□□□□□ -0.8
VPS13A-201ENST00000355766 ZIC2O95409 532 aaPredicted RBP10.06□□□□□ -0.8
VPS13A-201ENST00000355766 EZH2Q15910 746 aaKnown RBP10.06□□□□□ -0.8
VPS13A-201ENST00000355766 NBPF14Q5TI25 921 aa10.06□□□□□ -0.8
VPS13A-201ENST00000355766 WAPLQ7Z5K2 1190 aa10.06□□□□□ -0.8
VPS13A-201ENST00000355766 PURBQ96QR8 312 aaKnown RBP10.06□□□□□ -0.8
VPS13A-201ENST00000355766 KDM4CQ9H3R0 1056 aa10.06□□□□□ -0.8
VPS13A-201ENST00000355766 ZFAND3Q9H8U3 227 aa10.06□□□□□ -0.8
VPS13A-201ENST00000355766 COL14A1Q05707 1796 aaKnown RBP10.06□□□□□ -0.8
VPS13A-201ENST00000355766 IFT172Q9UG01 1749 aa10.05□□□□□ -0.8
VPS13A-201ENST00000355766 NINLQ9Y2I6 1382 aa10.05□□□□□ -0.8
VPS13A-201ENST00000355766 FAM83GA6ND36 823 aa10.05□□□□□ -0.8
VPS13A-201ENST00000355766 PSME1Q06323 249 aa10.05□□□□□ -0.8
VPS13A-201ENST00000355766 SKIV2LQ15477 1246 aaKnown RBP10.05□□□□□ -0.8
VPS13A-201ENST00000355766 FAM182BQ5T319 152 aa10.05□□□□□ -0.8
VPS13A-201ENST00000355766 ITPKCQ96DU7 683 aa10.05□□□□□ -0.8
VPS13A-201ENST00000355766 CAMKK2Q96RR4 588 aa10.05□□□□□ -0.8
VPS13A-201ENST00000355766 FAM117AQ9C073 453 aa10.05□□□□□ -0.8
VPS13A-201ENST00000355766 SCARF1Q14162 830 aa10.04□□□□□ -0.8
VPS13A-201ENST00000355766 PROCA1Q8NCQ7 364 aaPredicted RBP10.04□□□□□ -0.8
VPS13A-201ENST00000355766 NUP188Q5SRE5 1749 aa10.04□□□□□ -0.8
VPS13A-201ENST00000355766 SPATA31A5Q5VU36 1347 aa10.04□□□□□ -0.8
VPS13A-201ENST00000355766 SPATA31A7Q8IWB4 1347 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms