RNA–Protein interactions for RNA: ENST00000354547.7

COL13A1-201, Transcript of collagen type XIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL13A1, Length 3,027 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL13A1-201ENST00000354547 KSR2Q6VAB6 950 aa23.59■■□□□ 1.37
COL13A1-201ENST00000354547 ZSCAN30Q86W11 494 aa23.59■■□□□ 1.37
COL13A1-201ENST00000354547 KLHDC4Q8TBB5 520 aa23.59■■□□□ 1.37
COL13A1-201ENST00000354547 JARID2Q92833 1246 aaPredicted RBP23.59■■□□□ 1.37
COL13A1-201ENST00000354547 AMOTQ4VCS5 1084 aa23.59■■□□□ 1.37
COL13A1-201ENST00000354547 RUFY3Q7L099 469 aa23.59■■□□□ 1.37
COL13A1-201ENST00000354547 ARHGEF25Q86VW2 580 aa23.59■■□□□ 1.37
COL13A1-201ENST00000354547 PIP4K2AP48426 406 aaPredicted RBP23.58■■□□□ 1.37
COL13A1-201ENST00000354547 ECHDC1Q9NTX5 307 aa23.58■■□□□ 1.37
COL13A1-201ENST00000354547 WDR33Q9C0J8 1336 aaKnown RBP23.58■■□□□ 1.36
COL13A1-201ENST00000354547 KCNJ4P48050 445 aa23.57■■□□□ 1.36
COL13A1-201ENST00000354547 ADCK5Q3MIX3 580 aa23.57■■□□□ 1.36
COL13A1-201ENST00000354547 SUCLG2Q96I99 432 aa23.57■■□□□ 1.36
COL13A1-201ENST00000354547 JAKMIP1Q96N16 626 aaKnown RBP23.57■■□□□ 1.36
COL13A1-201ENST00000354547 LARGE1O95461 756 aa23.57■■□□□ 1.36
COL13A1-201ENST00000354547 CNPY2Q9Y2B0 182 aa23.57■■□□□ 1.36
COL13A1-201ENST00000354547 CHMP4AQ9BY43 222 aa23.57■■□□□ 1.36
COL13A1-201ENST00000354547 BICC1Q9H694 974 aaKnown RBP23.57■■□□□ 1.36
COL13A1-201ENST00000354547 CCDC83Q8IWF9 413 aa23.56■■□□□ 1.36
COL13A1-201ENST00000354547 NFAT5O94916 1531 aa23.56■■□□□ 1.36
COL13A1-201ENST00000354547 MPNDQ8N594 471 aa23.55■■□□□ 1.36
COL13A1-201ENST00000354547 LIMCH1Q9UPQ0 1083 aa23.55■■□□□ 1.36
COL13A1-201ENST00000354547 SMC3Q9UQE7 1217 aa23.55■■□□□ 1.36
COL13A1-201ENST00000354547 RIC3Q7Z5B4 369 aa23.55■■□□□ 1.36
COL13A1-201ENST00000354547 TTC14Q96N46 770 aa23.55■■□□□ 1.36
COL13A1-201ENST00000354547 G3BP1Q13283 466 aaKnown RBP eCLIP23.54■■□□□ 1.36
COL13A1-201ENST00000354547 GPATCH3Q96I76 525 aa23.54■■□□□ 1.36
COL13A1-201ENST00000354547 FAM227BQ96M60 508 aa23.54■■□□□ 1.36
COL13A1-201ENST00000354547 TLR7Q9NYK1 1049 aaKnown RBP23.54■■□□□ 1.36
COL13A1-201ENST00000354547 TTC41PQ6P2S7 1318 aa23.54■■□□□ 1.36
COL13A1-201ENST00000354547 GRM8O00222 908 aa23.54■■□□□ 1.36
COL13A1-201ENST00000354547 BOLA2Q9H3K6 86 aa23.54■■□□□ 1.36
COL13A1-201ENST00000354547 NLRP2Q9NX02 1062 aa23.54■■□□□ 1.36
COL13A1-201ENST00000354547 FIBPO43427 364 aa23.53■■□□□ 1.36
COL13A1-201ENST00000354547 SYT1P21579 422 aa23.53■■□□□ 1.36
COL13A1-201ENST00000354547 RUFY2Q8WXA3 655 aa23.53■■□□□ 1.36
COL13A1-201ENST00000354547 ALDH1L1O75891 902 aa23.53■■□□□ 1.36
COL13A1-201ENST00000354547 EAF2Q96CJ1 260 aaPredicted RBP23.53■■□□□ 1.36
COL13A1-201ENST00000354547 RPAP1Q9BWH6 1393 aaPredicted RBP23.52■■□□□ 1.36
COL13A1-201ENST00000354547 PDRG1Q9NUG6 133 aa23.52■■□□□ 1.36
COL13A1-201ENST00000354547 SASH1O94885 1247 aa23.52■■□□□ 1.36
COL13A1-201ENST00000354547 KRT28Q7Z3Y7 464 aa23.52■■□□□ 1.36
COL13A1-201ENST00000354547 NECAB1Q8N987 351 aa23.52■■□□□ 1.36
COL13A1-201ENST00000354547 DDX17Q92841 729 aaKnown RBP23.52■■□□□ 1.36
COL13A1-201ENST00000354547 KAZALD1Q96I82 304 aa23.52■■□□□ 1.36
COL13A1-201ENST00000354547 TCEANC2Q96MN5 208 aa23.52■■□□□ 1.36
COL13A1-201ENST00000354547 TSPY26PQ9H489 355 aa23.52■■□□□ 1.36
COL13A1-201ENST00000354547 TCHHQ07283 1943 aa23.52■■□□□ 1.36
COL13A1-201ENST00000354547 STX6O43752 255 aa23.51■■□□□ 1.35
COL13A1-201ENST00000354547 HYPKQ9NX55 129 aa23.51■■□□□ 1.35
COL13A1-201ENST00000354547 MTX1Q13505 466 aa23.51■■□□□ 1.35
COL13A1-201ENST00000354547 COL9A3Q14050 684 aaPredicted RBP23.51■■□□□ 1.35
COL13A1-201ENST00000354547 LINS1Q8NG48 757 aa23.51■■□□□ 1.35
COL13A1-201ENST00000354547 ZSCAN22P10073 491 aaPredicted RBP23.5■■□□□ 1.35
COL13A1-201ENST00000354547 NFATC2IPQ8NCF5 419 aa23.5■■□□□ 1.35
COL13A1-201ENST00000354547 SYAP1Q96A49 352 aaPredicted RBP23.5■■□□□ 1.35
COL13A1-201ENST00000354547 DDX58O95786 925 aaKnown RBP23.5■■□□□ 1.35
COL13A1-201ENST00000354547 CCDC9Q9Y3X0 531 aaKnown RBP23.5■■□□□ 1.35
COL13A1-201ENST00000354547 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.5■■□□□ 1.35
COL13A1-201ENST00000354547 NMIQ13287 307 aaPredicted RBP23.49■■□□□ 1.35
COL13A1-201ENST00000354547 ERC1Q8IUD2 1116 aa23.49■■□□□ 1.35
COL13A1-201ENST00000354547 IL17RAQ96F46 866 aa23.49■■□□□ 1.35
COL13A1-201ENST00000354547 GJB2P29033 226 aa23.49■■□□□ 1.35
COL13A1-201ENST00000354547 CYP46A1Q9Y6A2 500 aa23.49■■□□□ 1.35
COL13A1-201ENST00000354547 ADGRL3Q9HAR2 1447 aa23.49■■□□□ 1.35
COL13A1-201ENST00000354547 VPS37CA5D8V6 355 aaPredicted RBP23.49■■□□□ 1.35
COL13A1-201ENST00000354547 EVI5LQ96CN4 794 aa23.49■■□□□ 1.35
COL13A1-201ENST00000354547 EDC3Q96F86 508 aaKnown RBP23.49■■□□□ 1.35
COL13A1-201ENST00000354547 MED1Q15648 1581 aaPredicted RBP23.48■■□□□ 1.35
COL13A1-201ENST00000354547 RAPGEF4Q8WZA2 1011 aa23.48■■□□□ 1.35
COL13A1-201ENST00000354547 MYD88Q99836 296 aa23.48■■□□□ 1.35
COL13A1-201ENST00000354547 DDX21Q9NR30 783 aaKnown RBP eCLIP23.48■■□□□ 1.35
COL13A1-201ENST00000354547 RBM8AQ9Y5S9 174 aaKnown RBP23.48■■□□□ 1.35
COL13A1-201ENST00000354547 IGKV5-2P06315 115 aa23.48■■□□□ 1.35
COL13A1-201ENST00000354547 PROSER2Q86WR7 435 aaPredicted RBP23.48■■□□□ 1.35
COL13A1-201ENST00000354547 XAGE3Q8WTP9 111 aa23.48■■□□□ 1.35
COL13A1-201ENST00000354547 PDLIM2Q96JY6 352 aa23.48■■□□□ 1.35
COL13A1-201ENST00000354547 FSD1Q9BTV5 496 aa23.48■■□□□ 1.35
COL13A1-201ENST00000354547 NDUFB9Q9Y6M9 179 aa23.48■■□□□ 1.35
COL13A1-201ENST00000354547 KDM3BQ7LBC6 1761 aa23.47■■□□□ 1.35
COL13A1-201ENST00000354547 EPB41L2O43491 1005 aaKnown RBP23.47■■□□□ 1.35
COL13A1-201ENST00000354547 PTMAP06454 111 aaKnown RBP23.47■■□□□ 1.35
COL13A1-201ENST00000354547 COPS6Q7L5N1 327 aa23.47■■□□□ 1.35
COL13A1-201ENST00000354547 USP42Q9H9J4 1324 aaKnown RBP23.47■■□□□ 1.35
COL13A1-201ENST00000354547 PDIA6Q15084 440 aa23.46■■□□□ 1.35
COL13A1-201ENST00000354547 ZNF790Q6PG37 636 aa23.46■■□□□ 1.35
COL13A1-201ENST00000354547 N4BP2Q86UW6 1770 aaPredicted RBP23.46■■□□□ 1.35
COL13A1-201ENST00000354547 CSB-PGBD3P0DP91 1061 aa23.46■■□□□ 1.35
COL13A1-201ENST00000354547 ZKSCAN1P17029 563 aaPredicted RBP23.46■■□□□ 1.35
COL13A1-201ENST00000354547 EPHA10Q5JZY3 1008 aa23.46■■□□□ 1.35
COL13A1-201ENST00000354547 CABLES1Q8TDN4 633 aa23.46■■□□□ 1.35
COL13A1-201ENST00000354547 CCDC171Q6TFL3 1326 aa23.45■■□□□ 1.35
COL13A1-201ENST00000354547 F13A1P00488 732 aa23.45■■□□□ 1.34
COL13A1-201ENST00000354547 CHMP3Q9Y3E7 222 aa23.45■■□□□ 1.34
COL13A1-201ENST00000354547 CHD2O14647 1828 aaKnown RBP23.45■■□□□ 1.34
COL13A1-201ENST00000354547 A0A0D9SFI3 127 aa23.45■■□□□ 1.34
COL13A1-201ENST00000354547 DNM1Q05193 864 aaKnown RBP23.45■■□□□ 1.34
COL13A1-201ENST00000354547 NEXNQ0ZGT2 675 aa23.45■■□□□ 1.34
COL13A1-201ENST00000354547 CREB3L3Q68CJ9 461 aa23.45■■□□□ 1.34
COL13A1-201ENST00000354547 ME3Q16798 604 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms