RNA–Protein interactions for RNA: ENST00000344627.10

SGCA-202, Transcript of sarcoglycan alpha, humanhuman

TSL 1 (best) BASIC

Gene SGCA, Length 1,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-202ENST00000344627 PIP4K2AP48426 406 aaPredicted RBP16.41■□□□□ 0.22
SGCA-202ENST00000344627 RASSF7Q02833 373 aa16.41■□□□□ 0.22
SGCA-202ENST00000344627 RALBP1Q15311 655 aa16.41■□□□□ 0.22
SGCA-202ENST00000344627 TAF7Q15545 349 aaPredicted RBP16.41■□□□□ 0.22
SGCA-202ENST00000344627 JMYQ8N9B5 988 aa16.41■□□□□ 0.22
SGCA-202ENST00000344627 USP16Q9Y5T5 823 aa16.41■□□□□ 0.22
SGCA-202ENST00000344627 DLG5Q8TDM6 1919 aa16.41■□□□□ 0.22
SGCA-202ENST00000344627 PRAMEF22A3QJZ6 481 aa16.4■□□□□ 0.22
SGCA-202ENST00000344627 NFKBIEO00221 500 aa16.4■□□□□ 0.22
SGCA-202ENST00000344627 TPTE2Q6XPS3 522 aa16.4■□□□□ 0.22
SGCA-202ENST00000344627 SCN7AQ01118 1682 aa16.4■□□□□ 0.22
SGCA-202ENST00000344627 SRGNP10124 158 aa16.39■□□□□ 0.21
SGCA-202ENST00000344627 NFE2L2Q16236 605 aa16.39■□□□□ 0.21
SGCA-202ENST00000344627 TAOK3Q9H2K8 898 aa16.39■□□□□ 0.21
SGCA-202ENST00000344627 ERFEQ4G0M1 354 aa16.38■□□□□ 0.21
SGCA-202ENST00000344627 PLEKHF1Q96S99 279 aa16.38■□□□□ 0.21
SGCA-202ENST00000344627 SBF1O95248 1867 aa16.37■□□□□ 0.21
SGCA-202ENST00000344627 KLRG2A4D1S0 409 aaPredicted RBP16.37■□□□□ 0.21
SGCA-202ENST00000344627 C21orf2O43822 256 aa16.37■□□□□ 0.21
SGCA-202ENST00000344627 NPR1P16066 1061 aa16.37■□□□□ 0.21
SGCA-202ENST00000344627 NBPF5PQ86XG9 351 aaPredicted RBP16.37■□□□□ 0.21
SGCA-202ENST00000344627 CCDC24Q8N4L8 307 aa16.37■□□□□ 0.21
SGCA-202ENST00000344627 THUMPD2Q9BTF0 503 aaKnown RBP16.37■□□□□ 0.21
SGCA-202ENST00000344627 ALDH1B1P30837 517 aa16.36■□□□□ 0.21
SGCA-202ENST00000344627 GRIPAP1Q4V328 841 aa16.36■□□□□ 0.21
SGCA-202ENST00000344627 WDR90Q96KV7 1748 aa16.36■□□□□ 0.21
SGCA-202ENST00000344627 IQCA1LA6NCM1 817 aa16.35■□□□□ 0.21
SGCA-202ENST00000344627 CCDC93Q567U6 631 aa16.35■□□□□ 0.21
SGCA-202ENST00000344627 PRPF40BQ6NWY9 871 aaKnown RBP16.35■□□□□ 0.21
SGCA-202ENST00000344627 NYXQ9GZU5 481 aa16.35■□□□□ 0.21
SGCA-202ENST00000344627 ERVV-1B6SEH8 477 aa16.34■□□□□ 0.21
SGCA-202ENST00000344627 PRELPP51888 382 aa16.34■□□□□ 0.21
SGCA-202ENST00000344627 RTKN2Q8IZC4 609 aa16.34■□□□□ 0.21
SGCA-202ENST00000344627 NGEFQ8N5V2 710 aa16.34■□□□□ 0.21
SGCA-202ENST00000344627 MYBBP1AQ9BQG0 1328 aaKnown RBP16.34■□□□□ 0.21
SGCA-202ENST00000344627 RIPK4P57078 832 aa16.33■□□□□ 0.2
SGCA-202ENST00000344627 CC2D2BQ6DHV5 1058 aa16.33■□□□□ 0.2
SGCA-202ENST00000344627 NIP7Q9Y221 180 aaKnown RBP eCLIP16.33■□□□□ 0.2
SGCA-202ENST00000344627 WDR43Q15061 677 aaKnown RBP eCLIP16.32■□□□□ 0.2
SGCA-202ENST00000344627 ERBB4Q15303 1308 aa16.32■□□□□ 0.2
SGCA-202ENST00000344627 C7orf43Q8WVR3 580 aa16.32■□□□□ 0.2
SGCA-202ENST00000344627 ZNF219Q9P2Y4 722 aaPredicted RBP16.32■□□□□ 0.2
SGCA-202ENST00000344627 RRP7AQ9Y3A4 280 aaKnown RBP16.32■□□□□ 0.2
SGCA-202ENST00000344627 FAM177BA6PVY3 158 aa16.31■□□□□ 0.2
SGCA-202ENST00000344627 NBPF26B4DH59 902 aa16.31■□□□□ 0.2
SGCA-202ENST00000344627 GTF2E1P29083 439 aaPredicted RBP16.31■□□□□ 0.2
SGCA-202ENST00000344627 FKBP4Q02790 459 aaKnown RBP eCLIP16.31■□□□□ 0.2
SGCA-202ENST00000344627 NEUROD2Q15784 382 aa16.31■□□□□ 0.2
SGCA-202ENST00000344627 NBPF10Q6P3W6 841 aaKnown RBP16.31■□□□□ 0.2
SGCA-202ENST00000344627 CCDC146Q8IYE0 955 aa16.31■□□□□ 0.2
SGCA-202ENST00000344627 NBPF15Q8N660 670 aa16.31■□□□□ 0.2
SGCA-202ENST00000344627 BABAM1Q9NWV8 329 aa16.31■□□□□ 0.2
SGCA-202ENST00000344627 TSPYL4Q9UJ04 414 aa16.31■□□□□ 0.2
SGCA-202ENST00000344627 BCORQ6W2J9 1755 aa16.31■□□□□ 0.2
SGCA-202ENST00000344627 IBTKQ9P2D0 1353 aaPredicted RBP16.3■□□□□ 0.2
SGCA-202ENST00000344627 POTECB2RU33 542 aa16.3■□□□□ 0.2
SGCA-202ENST00000344627 EIF4A1P60842 406 aaKnown RBP16.3■□□□□ 0.2
SGCA-202ENST00000344627 CHADLQ6NUI6 762 aa16.3■□□□□ 0.2
SGCA-202ENST00000344627 L3MBTL3Q96JM7 780 aaPredicted RBP16.3■□□□□ 0.2
SGCA-202ENST00000344627 ANKRD31Q8N7Z5 1873 aa16.29■□□□□ 0.2
SGCA-202ENST00000344627 TIAM2Q8IVF5 1701 aa16.29■□□□□ 0.2
SGCA-202ENST00000344627 MYL6BP14649 208 aa16.29■□□□□ 0.2
SGCA-202ENST00000344627 TMPOP42166 694 aaKnown RBP16.29■□□□□ 0.2
SGCA-202ENST00000344627 LMOD3Q0VAK6 560 aa16.29■□□□□ 0.2
SGCA-202ENST00000344627 KIF6Q6ZMV9 814 aa16.29■□□□□ 0.2
SGCA-202ENST00000344627 CREBZFQ9NS37 354 aa16.29■□□□□ 0.2
SGCA-202ENST00000344627 FER1L6Q2WGJ9 1857 aa16.29■□□□□ 0.2
SGCA-202ENST00000344627 KDM3BQ7LBC6 1761 aa16.28■□□□□ 0.2
SGCA-202ENST00000344627 LDHDQ86WU2 507 aa16.28■□□□□ 0.2
SGCA-202ENST00000344627 CCDC88AQ3V6T2 1871 aa16.28■□□□□ 0.2
SGCA-202ENST00000344627 RIC1Q4ADV7 1423 aa16.28■□□□□ 0.2
SGCA-202ENST00000344627 MAP3K15Q6ZN16 1313 aa16.27■□□□□ 0.2
SGCA-202ENST00000344627 EIF2S2P20042 333 aaKnown RBP16.27■□□□□ 0.2
SGCA-202ENST00000344627 CRY2Q49AN0 593 aa16.27■□□□□ 0.2
SGCA-202ENST00000344627 PNMA8AQ86V59 439 aaPredicted RBP16.27■□□□□ 0.2
SGCA-202ENST00000344627 PSMD1Q99460 953 aa16.27■□□□□ 0.2
SGCA-202ENST00000344627 LAS1LQ9Y4W2 734 aaKnown RBP16.27■□□□□ 0.2
SGCA-202ENST00000344627 LAMB4A4D0S4 1761 aa16.27■□□□□ 0.2
SGCA-202ENST00000344627 CACNA1SQ13698 1873 aa16.27■□□□□ 0.19
SGCA-202ENST00000344627 ARFGEF2Q9Y6D5 1785 aa16.26■□□□□ 0.19
SGCA-202ENST00000344627 DDNO94850 711 aaPredicted RBP16.26■□□□□ 0.19
SGCA-202ENST00000344627 HLFQ16534 295 aa16.26■□□□□ 0.19
SGCA-202ENST00000344627 DICER1Q9UPY3 1922 aaKnown RBP16.25■□□□□ 0.19
SGCA-202ENST00000344627 COL11A2P13942 1736 aaPredicted RBP16.25■□□□□ 0.19
SGCA-202ENST00000344627 RNF123Q5XPI4 1314 aa16.25■□□□□ 0.19
SGCA-202ENST00000344627 HOXA10P31260 410 aaPredicted RBP16.25■□□□□ 0.19
SGCA-202ENST00000344627 HTRA3P83110 453 aa16.25■□□□□ 0.19
SGCA-202ENST00000344627 PARP10Q53GL7 1025 aa16.25■□□□□ 0.19
SGCA-202ENST00000344627 RUNDC1Q96C34 613 aa16.25■□□□□ 0.19
SGCA-202ENST00000344627 TMX4Q9H1E5 349 aaPredicted RBP16.25■□□□□ 0.19
SGCA-202ENST00000344627 VPS33BQ9H267 617 aa16.25■□□□□ 0.19
SGCA-202ENST00000344627 IARSP41252 1262 aaKnown RBP16.24■□□□□ 0.19
SGCA-202ENST00000344627 TTLL7Q6ZT98 887 aa16.24■□□□□ 0.19
SGCA-202ENST00000344627 PPP1R42Q7Z4L9 355 aa16.24■□□□□ 0.19
SGCA-202ENST00000344627 JDP2Q8WYK2 163 aa16.24■□□□□ 0.19
SGCA-202ENST00000344627 ZBTB3Q9H5J0 574 aa16.24■□□□□ 0.19
SGCA-202ENST00000344627 PRKRIP1Q9H875 184 aaPredicted RBP16.24■□□□□ 0.19
SGCA-202ENST00000344627 ADAMTS8Q9UP79 889 aa16.24■□□□□ 0.19
SGCA-202ENST00000344627 FZD9O00144 591 aa16.23■□□□□ 0.19
SGCA-202ENST00000344627 GPC2Q8N158 579 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms