RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 NPM1P06748 294 aaKnown RBP eCLIP11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 MCM6Q14566 821 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 RNF20Q5VTR2 975 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 N4BP2L2Q92802 583 aaPredicted RBP11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 MIEF2Q96C03 454 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 DNAJC25Q9H1X3 360 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 ATAD2Q6PL18 1390 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 DNM1Q05193 864 aaKnown RBP11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 NBPF9Q3BBW0 867 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 WWC2Q6AWC2 1192 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 BICC1Q9H694 974 aaKnown RBP11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 PDE11AQ9HCR9 933 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 FAN1Q9Y2M0 1017 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 ABCC5O15440 1437 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 KLHL33A6NCF5 533 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 CCT2P78371 535 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 CCZ1BP86790 482 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 CCZ1P86791 482 aaPredicted RBP11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 C11orf91Q3C1V1 193 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 ZC3H12AQ5D1E8 599 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 LRRC31Q6UY01 552 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 GBP6Q6ZN66 633 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 FAM177A1Q8N128 213 aaPredicted RBP11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 AKAP2Q9Y2D5 859 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 AP1G2O75843 785 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 IFIT2P09913 472 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 CCNHP51946 323 aaPredicted RBP11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 EVCP57679 992 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 PLEKHM2Q8IWE5 1019 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 SIRT2Q8IXJ6 389 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 FBXW7Q969H0 707 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 CD248Q9HCU0 757 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 KIF2AO00139 706 aaPredicted RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 ERLIN2O94905 339 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 LIG1P18858 919 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 NUTM2GQ5VZR2 741 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 CLIC6Q96NY7 704 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 DNAI1Q9UI46 699 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 GPRASP1Q5JY77 1395 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 RPAP1Q9BWH6 1393 aaPredicted RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 SDSP20132 328 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 SSR1P43307 286 aaKnown RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 ZRSR1Q15695 479 aaKnown RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 NBPF11Q86T75 865 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 L2HGDHQ9H9P8 463 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 SUGCTQ9HAC7 445 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 MIS18AQ9NYP9 233 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 CDC42BPAQ5VT25 1732 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 ATP10AO60312 1499 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 PIK3C2GO75747 1445 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 ANKRD50Q9ULJ7 1429 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 WDR33Q9C0J8 1336 aaKnown RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 FANCGO15287 622 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 IPO8O15397 1037 aaKnown RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 URI1O94763 535 aaPredicted RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 TBC1D8BQ0IIM8 1120 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 INTS3Q68E01 1043 aaKnown RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 FAM173BQ6P4H8 233 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 NBPF5PQ86XG9 351 aaPredicted RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 ZSWIM4Q9H7M6 989 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 GPATCH8Q9UKJ3 1502 aaKnown RBP11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 AATKQ6ZMQ8 1374 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 MCM2P49736 904 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 HOMER1Q86YM7 354 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 EFCAB13Q8IY85 973 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 FUT8Q9BYC5 575 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 RPS6KL1Q9Y6S9 549 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 ELF1P32519 619 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 SCRN1Q12765 414 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 CCDC93Q567U6 631 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 TTC22Q5TAA0 569 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 TSHZ3Q63HK5 1081 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 PPP1R13BQ96KQ4 1090 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 PICK1Q9NRD5 415 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 CFAP65Q6ZU64 1925 aaKnown RBP11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 CPP00450 1065 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 SNX1Q13596 522 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 GNL3LQ9NVN8 582 aaKnown RBP11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 RBM28Q9NW13 759 aaKnown RBP11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 ZNF777Q9ULD5 760 aaPredicted RBP11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 TADA3O75528 432 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 CLSTN1O94985 981 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 MAP3K11Q16584 847 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 E4F1Q66K89 784 aaPredicted RBP11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 TERF2IPQ9NYB0 399 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 NUP155O75694 1391 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 ITSN2Q9NZM3 1697 aa11.27□□□□□ -0.6
PTCHD4-201ENST00000339488 BIN2Q9UBW5 565 aaPredicted RBP11.27□□□□□ -0.6
PTCHD4-201ENST00000339488 PPP6R1Q9UPN7 881 aa11.27□□□□□ -0.6
PTCHD4-201ENST00000339488 PEX19P40855 299 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 ZNF165P49910 485 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 CUL4AQ13619 759 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 TBC1D22AQ8WUA7 517 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 NUP62CLQ9H1M0 184 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 PSD3Q9NYI0 1048 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 CDC42BPBQ9Y5S2 1711 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 PRAG1Q86YV5 1406 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 PSMD2Q13200 908 aa11.26□□□□□ -0.61
PTCHD4-201ENST00000339488 TMEM87AQ8NBN3 555 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms