RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 NBPF7P0C2Y1 421 aaPredicted RBP18.4■□□□□ 0.54
CBX3-201ENST00000337620 ZBTB3Q9H5J0 574 aa18.4■□□□□ 0.54
CBX3-201ENST00000337620 TJP1Q07157 1748 aa18.4■□□□□ 0.54
CBX3-201ENST00000337620 ITPK1Q13572 414 aa18.39■□□□□ 0.53
CBX3-201ENST00000337620 PDZRN3Q9UPQ7 1066 aa18.38■□□□□ 0.53
CBX3-201ENST00000337620 NEURL1BA8MQ27 555 aa18.38■□□□□ 0.53
CBX3-201ENST00000337620 RGS3P49796 1198 aa18.38■□□□□ 0.53
CBX3-201ENST00000337620 NPM2Q86SE8 214 aaKnown RBP18.38■□□□□ 0.53
CBX3-201ENST00000337620 SMC5Q8IY18 1101 aa18.38■□□□□ 0.53
CBX3-201ENST00000337620 NHSQ6T4R5 1651 aa18.37■□□□□ 0.53
CBX3-201ENST00000337620 ATP5J2-PTCD1G3V325 749 aa18.37■□□□□ 0.53
CBX3-201ENST00000337620 KIF6Q6ZMV9 814 aa18.37■□□□□ 0.53
CBX3-201ENST00000337620 RXRBP28702 533 aa18.37■□□□□ 0.53
CBX3-201ENST00000337620 CRKLP46109 303 aaKnown RBP18.37■□□□□ 0.53
CBX3-201ENST00000337620 GCC1Q96CN9 775 aa18.37■□□□□ 0.53
CBX3-201ENST00000337620 CCDC87Q9NVE4 849 aa18.37■□□□□ 0.53
CBX3-201ENST00000337620 ARFGEF2Q9Y6D5 1785 aa18.36■□□□□ 0.53
CBX3-201ENST00000337620 BTAF1O14981 1849 aa18.36■□□□□ 0.53
CBX3-201ENST00000337620 GRM8O00222 908 aa18.36■□□□□ 0.53
CBX3-201ENST00000337620 KCNQ4P56696 695 aa18.36■□□□□ 0.53
CBX3-201ENST00000337620 BRWD3Q6RI45 1802 aa18.36■□□□□ 0.53
CBX3-201ENST00000337620 FAM196AQ6ZSG2 479 aa18.36■□□□□ 0.53
CBX3-201ENST00000337620 HMMRO75330 724 aa18.35■□□□□ 0.53
CBX3-201ENST00000337620 IL6STP40189 918 aaPredicted RBP18.35■□□□□ 0.53
CBX3-201ENST00000337620 GCKRQ14397 625 aa18.35■□□□□ 0.53
CBX3-201ENST00000337620 INTS5Q6P9B9 1019 aaKnown RBP18.35■□□□□ 0.53
CBX3-201ENST00000337620 SBF2Q86WG5 1849 aa18.35■□□□□ 0.53
CBX3-201ENST00000337620 ATP8B2P98198 1209 aa18.34■□□□□ 0.53
CBX3-201ENST00000337620 BCL11BQ9C0K0 894 aaPredicted RBP18.34■□□□□ 0.53
CBX3-201ENST00000337620 EP400Q96L91 3159 aa18.34■□□□□ 0.53
CBX3-201ENST00000337620 DCTPP1Q9H773 170 aa18.34■□□□□ 0.53
CBX3-201ENST00000337620 HDAC5Q9UQL6 1122 aa18.34■□□□□ 0.53
CBX3-201ENST00000337620 PNMA6EA0A0J9YXQ4 647 aa18.33■□□□□ 0.52
CBX3-201ENST00000337620 ANKRD45Q5TZF3 282 aa18.33■□□□□ 0.52
CBX3-201ENST00000337620 MAP3K15Q6ZN16 1313 aa18.33■□□□□ 0.52
CBX3-201ENST00000337620 LINC00116Q8NCU8 138 aa18.32■□□□□ 0.52
CBX3-201ENST00000337620 RGS17Q9UGC6 210 aaPredicted RBP18.32■□□□□ 0.52
CBX3-201ENST00000337620 TBC1D2BQ9UPU7 963 aa18.32■□□□□ 0.52
CBX3-201ENST00000337620 NUP188Q5SRE5 1749 aa18.32■□□□□ 0.52
CBX3-201ENST00000337620 UTYO14607 1347 aa18.32■□□□□ 0.52
CBX3-201ENST00000337620 EIF5P55010 431 aaKnown RBP18.32■□□□□ 0.52
CBX3-201ENST00000337620 NUCB1Q02818 461 aa18.32■□□□□ 0.52
CBX3-201ENST00000337620 DZIP3Q86Y13 1208 aaKnown RBP18.32■□□□□ 0.52
CBX3-201ENST00000337620 JARID2Q92833 1246 aaPredicted RBP18.32■□□□□ 0.52
CBX3-201ENST00000337620 CCNL1Q9UK58 526 aaPredicted RBP18.32■□□□□ 0.52
CBX3-201ENST00000337620 A0A087WZG4 1122 aa18.31■□□□□ 0.52
CBX3-201ENST00000337620 TRIM37O94972 964 aa18.31■□□□□ 0.52
CBX3-201ENST00000337620 PPP1R42Q7Z4L9 355 aa18.31■□□□□ 0.52
CBX3-201ENST00000337620 AFDNP55196 1824 aaKnown RBP18.31■□□□□ 0.52
CBX3-201ENST00000337620 TCIRG1Q13488 830 aa18.31■□□□□ 0.52
CBX3-201ENST00000337620 SUCLG2Q96I99 432 aa18.31■□□□□ 0.52
CBX3-201ENST00000337620 LNPKQ9C0E8 428 aa18.31■□□□□ 0.52
CBX3-201ENST00000337620 CWC25Q9NXE8 425 aaPredicted RBP18.31■□□□□ 0.52
CBX3-201ENST00000337620 HLFQ16534 295 aa18.3■□□□□ 0.52
CBX3-201ENST00000337620 CHD1LQ86WJ1 897 aa18.3■□□□□ 0.52
CBX3-201ENST00000337620 CICQ96RK0 1608 aaPredicted RBP18.3■□□□□ 0.52
CBX3-201ENST00000337620 IBTKQ9P2D0 1353 aaPredicted RBP18.3■□□□□ 0.52
CBX3-201ENST00000337620 MYH14Q7Z406 1995 aaKnown RBP18.29■□□□□ 0.52
CBX3-201ENST00000337620 APBB1O00213 710 aa18.29■□□□□ 0.52
CBX3-201ENST00000337620 SRGAP3O43295 1099 aa18.29■□□□□ 0.52
CBX3-201ENST00000337620 GIGYF2Q6Y7W6 1299 aaKnown RBP18.29■□□□□ 0.52
CBX3-201ENST00000337620 UBE3BQ7Z3V4 1068 aa18.29■□□□□ 0.52
CBX3-201ENST00000337620 CCDC191Q8NCU4 936 aa18.29■□□□□ 0.52
CBX3-201ENST00000337620 BCL11AQ9H165 835 aa18.29■□□□□ 0.52
CBX3-201ENST00000337620 ZNF831Q5JPB2 1677 aa18.29■□□□□ 0.52
CBX3-201ENST00000337620 POTEAQ6S8J7 498 aa18.29■□□□□ 0.52
CBX3-201ENST00000337620 SSH3Q8TE77 659 aa18.28■□□□□ 0.52
CBX3-201ENST00000337620 ISCA1Q9BUE6 129 aa18.28■□□□□ 0.52
CBX3-201ENST00000337620 BICC1Q9H694 974 aaKnown RBP18.28■□□□□ 0.52
CBX3-201ENST00000337620 ZBTB47Q9UFB7 747 aaPredicted RBP18.28■□□□□ 0.52
CBX3-201ENST00000337620 COL5A3P25940 1745 aaPredicted RBP18.28■□□□□ 0.52
CBX3-201ENST00000337620 RTL5Q5HYW3 569 aaPredicted RBP18.28■□□□□ 0.52
CBX3-201ENST00000337620 KAZALD1Q96I82 304 aa18.28■□□□□ 0.52
CBX3-201ENST00000337620 EXOC6BQ9Y2D4 811 aa18.28■□□□□ 0.52
CBX3-201ENST00000337620 ERVV-1B6SEH8 477 aa18.27■□□□□ 0.52
CBX3-201ENST00000337620 PDE4AP27815 886 aa18.27■□□□□ 0.52
CBX3-201ENST00000337620 HSP90AB3PQ58FF7 597 aa18.27■□□□□ 0.52
CBX3-201ENST00000337620 CNTNAP4Q9C0A0 1308 aa18.26■□□□□ 0.51
CBX3-201ENST00000337620 RREB1Q92766 1687 aa18.26■□□□□ 0.51
CBX3-201ENST00000337620 H7C1W4 665 aa18.26■□□□□ 0.51
CBX3-201ENST00000337620 GPTP24298 496 aa18.26■□□□□ 0.51
CBX3-201ENST00000337620 POLA2Q14181 598 aa18.26■□□□□ 0.51
CBX3-201ENST00000337620 TSHZ2Q9NRE2 1034 aa18.26■□□□□ 0.51
CBX3-201ENST00000337620 TRIM28Q13263 835 aaKnown RBP18.25■□□□□ 0.51
CBX3-201ENST00000337620 MTX1Q13505 466 aa18.25■□□□□ 0.51
CBX3-201ENST00000337620 RC3H1Q5TC82 1133 aaKnown RBP18.25■□□□□ 0.51
CBX3-201ENST00000337620 COL15A1P39059 1388 aa18.25■□□□□ 0.51
CBX3-201ENST00000337620 CASP7P55210 303 aa18.25■□□□□ 0.51
CBX3-201ENST00000337620 EPHA10Q5JZY3 1008 aa18.25■□□□□ 0.51
CBX3-201ENST00000337620 LY75O60449 1722 aa18.24■□□□□ 0.51
CBX3-201ENST00000337620 SMARCA5O60264 1052 aaPredicted RBP18.24■□□□□ 0.51
CBX3-201ENST00000337620 SURF6O75683 361 aaKnown RBP18.24■□□□□ 0.51
CBX3-201ENST00000337620 GNPATO15228 680 aa18.23■□□□□ 0.51
CBX3-201ENST00000337620 CAMTA2O94983 1202 aa18.23■□□□□ 0.51
CBX3-201ENST00000337620 SMIM5Q71RC9 77 aa18.23■□□□□ 0.51
CBX3-201ENST00000337620 LRRC4BQ9NT99 713 aa18.23■□□□□ 0.51
CBX3-201ENST00000337620 NLRP10Q86W26 655 aa18.22■□□□□ 0.51
CBX3-201ENST00000337620 NUP98P52948 1817 aa18.22■□□□□ 0.51
CBX3-201ENST00000337620 RPS6KA4O75676 772 aa18.22■□□□□ 0.51
CBX3-201ENST00000337620 FAM89AQ96GI7 184 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms