RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SMC5Q8IY18 1101 aa18.74■□□□□ 0.59
CCDC88C-202ENST00000334448 CCDC87Q9NVE4 849 aa18.74■□□□□ 0.59
CCDC88C-202ENST00000334448 BRWD3Q6RI45 1802 aa18.74■□□□□ 0.59
CCDC88C-202ENST00000334448 LY75O60449 1722 aa18.74■□□□□ 0.59
CCDC88C-202ENST00000334448 CNTNAP4Q9C0A0 1308 aa18.74■□□□□ 0.59
CCDC88C-202ENST00000334448 ARFGEF2Q9Y6D5 1785 aa18.73■□□□□ 0.59
CCDC88C-202ENST00000334448 IGKV5-2P06315 115 aa18.73■□□□□ 0.59
CCDC88C-202ENST00000334448 PIP4K2AP48426 406 aaPredicted RBP18.73■□□□□ 0.59
CCDC88C-202ENST00000334448 CEP85Q6P2H3 762 aa18.73■□□□□ 0.59
CCDC88C-202ENST00000334448 INTS5Q6P9B9 1019 aaKnown RBP18.73■□□□□ 0.59
CCDC88C-202ENST00000334448 PTF1AQ7RTS3 328 aa18.73■□□□□ 0.59
CCDC88C-202ENST00000334448 SIRT2Q8IXJ6 389 aa18.73■□□□□ 0.59
CCDC88C-202ENST00000334448 HDAC5Q9UQL6 1122 aa18.73■□□□□ 0.59
CCDC88C-202ENST00000334448 ZBTB1Q9Y2K1 713 aa18.73■□□□□ 0.59
CCDC88C-202ENST00000334448 NEURL1BA8MQ27 555 aa18.72■□□□□ 0.59
CCDC88C-202ENST00000334448 EIF5P55010 431 aaKnown RBP18.72■□□□□ 0.59
CCDC88C-202ENST00000334448 TTLL7Q6ZT98 887 aa18.72■□□□□ 0.59
CCDC88C-202ENST00000334448 RGL2O15211 777 aa18.71■□□□□ 0.59
CCDC88C-202ENST00000334448 UBTFL1P0CB47 393 aaPredicted RBP18.71■□□□□ 0.59
CCDC88C-202ENST00000334448 CRKLP46109 303 aaKnown RBP18.71■□□□□ 0.59
CCDC88C-202ENST00000334448 TRIM28Q13263 835 aaKnown RBP18.71■□□□□ 0.59
CCDC88C-202ENST00000334448 FAM182BQ5T319 152 aa18.71■□□□□ 0.59
CCDC88C-202ENST00000334448 RC3H1Q5TC82 1133 aaKnown RBP18.71■□□□□ 0.59
CCDC88C-202ENST00000334448 C1orf115Q9H7X2 142 aa18.71■□□□□ 0.59
CCDC88C-202ENST00000334448 MAP3K15Q6ZN16 1313 aa18.71■□□□□ 0.59
CCDC88C-202ENST00000334448 ERVV-1B6SEH8 477 aa18.7■□□□□ 0.58
CCDC88C-202ENST00000334448 GRM8O00222 908 aa18.69■□□□□ 0.58
CCDC88C-202ENST00000334448 MTX1Q13505 466 aa18.69■□□□□ 0.58
CCDC88C-202ENST00000334448 GCKRQ14397 625 aa18.69■□□□□ 0.58
CCDC88C-202ENST00000334448 KIF6Q6ZMV9 814 aa18.69■□□□□ 0.58
CCDC88C-202ENST00000334448 GCC1Q96CN9 775 aa18.69■□□□□ 0.58
CCDC88C-202ENST00000334448 HMMRO75330 724 aa18.68■□□□□ 0.58
CCDC88C-202ENST00000334448 CWF19L2Q2TBE0 894 aaKnown RBP18.68■□□□□ 0.58
CCDC88C-202ENST00000334448 POTEAQ6S8J7 498 aa18.68■□□□□ 0.58
CCDC88C-202ENST00000334448 MYD88Q99836 296 aa18.68■□□□□ 0.58
CCDC88C-202ENST00000334448 ISCA1Q9BUE6 129 aa18.68■□□□□ 0.58
CCDC88C-202ENST00000334448 KAT6BQ8WYB5 2073 aa18.68■□□□□ 0.58
CCDC88C-202ENST00000334448 NBPF7P0C2Y1 421 aaPredicted RBP18.67■□□□□ 0.58
CCDC88C-202ENST00000334448 HMGB2P26583 209 aaKnown RBP18.67■□□□□ 0.58
CCDC88C-202ENST00000334448 HSP90AB3PQ58FF7 597 aa18.67■□□□□ 0.58
CCDC88C-202ENST00000334448 GIGYF2Q6Y7W6 1299 aaKnown RBP18.67■□□□□ 0.58
CCDC88C-202ENST00000334448 CCDC191Q8NCU4 936 aa18.67■□□□□ 0.58
CCDC88C-202ENST00000334448 LINC00116Q8NCU8 138 aa18.67■□□□□ 0.58
CCDC88C-202ENST00000334448 LRRFIP2Q9Y608 721 aaKnown RBP18.67■□□□□ 0.58
CCDC88C-202ENST00000334448 ATP8B2P98198 1209 aa18.66■□□□□ 0.58
CCDC88C-202ENST00000334448 TCIRG1Q13488 830 aa18.66■□□□□ 0.58
CCDC88C-202ENST00000334448 SLC27A3Q5K4L6 730 aa18.66■□□□□ 0.58
CCDC88C-202ENST00000334448 DCTPP1Q9H773 170 aa18.66■□□□□ 0.58
CCDC88C-202ENST00000334448 C9orf78Q9NZ63 289 aaPredicted RBP18.66■□□□□ 0.58
CCDC88C-202ENST00000334448 CASP7P55210 303 aa18.65■□□□□ 0.58
CCDC88C-202ENST00000334448 ZBTB3Q9H5J0 574 aa18.65■□□□□ 0.58
CCDC88C-202ENST00000334448 CCNL1Q9UK58 526 aaPredicted RBP18.65■□□□□ 0.58
CCDC88C-202ENST00000334448 MYH14Q7Z406 1995 aaKnown RBP18.64■□□□□ 0.58
CCDC88C-202ENST00000334448 A0A087WZG4 1122 aa18.64■□□□□ 0.57
CCDC88C-202ENST00000334448 POLA2Q14181 598 aa18.64■□□□□ 0.57
CCDC88C-202ENST00000334448 SSH3Q8TE77 659 aa18.64■□□□□ 0.57
CCDC88C-202ENST00000334448 CWC25Q9NXE8 425 aaPredicted RBP18.64■□□□□ 0.57
CCDC88C-202ENST00000334448 H7C1W4 665 aa18.63■□□□□ 0.57
CCDC88C-202ENST00000334448 NUCB1Q02818 461 aa18.63■□□□□ 0.57
CCDC88C-202ENST00000334448 DZIP3Q86Y13 1208 aaKnown RBP18.63■□□□□ 0.57
CCDC88C-202ENST00000334448 NPM2Q86SE8 214 aaKnown RBP18.62■□□□□ 0.57
CCDC88C-202ENST00000334448 KAZALD1Q96I82 304 aa18.62■□□□□ 0.57
CCDC88C-202ENST00000334448 PDZRN3Q9UPQ7 1066 aa18.62■□□□□ 0.57
CCDC88C-202ENST00000334448 TAF1LQ8IZX4 1826 aa18.61■□□□□ 0.57
CCDC88C-202ENST00000334448 RGPD3A6NKT7 1758 aaPredicted RBP18.61■□□□□ 0.57
CCDC88C-202ENST00000334448 RGPD4Q7Z3J3 1758 aa18.61■□□□□ 0.57
CCDC88C-202ENST00000334448 PLSCR1O15162 318 aa18.61■□□□□ 0.57
CCDC88C-202ENST00000334448 RPS6KA4O75676 772 aa18.61■□□□□ 0.57
CCDC88C-202ENST00000334448 CAMTA2O94983 1202 aa18.61■□□□□ 0.57
CCDC88C-202ENST00000334448 RABL6Q3YEC7 729 aaPredicted RBP18.61■□□□□ 0.57
CCDC88C-202ENST00000334448 ANKRD36CQ5JPF3 1778 aa18.6■□□□□ 0.57
CCDC88C-202ENST00000334448 BCORQ6W2J9 1755 aa18.6■□□□□ 0.57
CCDC88C-202ENST00000334448 C4BP0C0L5 1744 aa18.6■□□□□ 0.57
CCDC88C-202ENST00000334448 PNMA6EA0A0J9YXQ4 647 aa18.6■□□□□ 0.57
CCDC88C-202ENST00000334448 ATP5J2-PTCD1G3V325 749 aa18.6■□□□□ 0.57
CCDC88C-202ENST00000334448 TRIM37O94972 964 aa18.6■□□□□ 0.57
CCDC88C-202ENST00000334448 CLEC4GQ6UXB4 293 aa18.6■□□□□ 0.57
CCDC88C-202ENST00000334448 SUCLG2Q96I99 432 aa18.6■□□□□ 0.57
CCDC88C-202ENST00000334448 SCN7AQ01118 1682 aa18.6■□□□□ 0.57
CCDC88C-202ENST00000334448 HLFQ16534 295 aa18.59■□□□□ 0.57
CCDC88C-202ENST00000334448 PPP1R42Q7Z4L9 355 aa18.59■□□□□ 0.57
CCDC88C-202ENST00000334448 ZNF34Q8IZ26 560 aa18.59■□□□□ 0.57
CCDC88C-202ENST00000334448 ZNF330Q9Y3S2 320 aaPredicted RBP18.59■□□□□ 0.57
CCDC88C-202ENST00000334448 AFDNP55196 1824 aaKnown RBP18.58■□□□□ 0.57
CCDC88C-202ENST00000334448 CDHR2Q9BYE9 1310 aa18.58■□□□□ 0.57
CCDC88C-202ENST00000334448 PCCAP05165 728 aaPredicted RBP18.58■□□□□ 0.56
CCDC88C-202ENST00000334448 ADRA2BP18089 450 aa18.58■□□□□ 0.56
CCDC88C-202ENST00000334448 NLRP10Q86W26 655 aa18.58■□□□□ 0.56
CCDC88C-202ENST00000334448 CHD1LQ86WJ1 897 aa18.58■□□□□ 0.56
CCDC88C-202ENST00000334448 PLA2G12BQ9BX93 195 aa18.58■□□□□ 0.56
CCDC88C-202ENST00000334448 LRRC4BQ9NT99 713 aa18.58■□□□□ 0.56
CCDC88C-202ENST00000334448 NOP58Q9Y2X3 529 aaKnown RBP18.58■□□□□ 0.56
CCDC88C-202ENST00000334448 TNS1Q9HBL0 1735 aaKnown RBP18.57■□□□□ 0.56
CCDC88C-202ENST00000334448 UBE3BQ7Z3V4 1068 aa18.57■□□□□ 0.56
CCDC88C-202ENST00000334448 BICC1Q9H694 974 aaKnown RBP18.57■□□□□ 0.56
CCDC88C-202ENST00000334448 TBC1D2BQ9UPU7 963 aa18.57■□□□□ 0.56
CCDC88C-202ENST00000334448 EP400Q96L91 3159 aa18.56■□□□□ 0.56
CCDC88C-202ENST00000334448 SRGAP3O43295 1099 aa18.56■□□□□ 0.56
CCDC88C-202ENST00000334448 PARP10Q53GL7 1025 aa18.56■□□□□ 0.56
CCDC88C-202ENST00000334448 ZBTB38Q8NAP3 1195 aaPredicted RBP18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms