RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TAF3Q5VWG9 929 aa16■□□□□ 0.15
CCDC88C-201ENST00000331194 NUP62CLQ9H1M0 184 aa16■□□□□ 0.15
CCDC88C-201ENST00000331194 ZNF75DP51815 510 aa16■□□□□ 0.15
CCDC88C-201ENST00000331194 ST3GAL1Q11201 340 aa16■□□□□ 0.15
CCDC88C-201ENST00000331194 CEP135Q66GS9 1140 aa16■□□□□ 0.15
CCDC88C-201ENST00000331194 LRRFIP2Q9Y608 721 aaKnown RBP16■□□□□ 0.15
CCDC88C-201ENST00000331194 MYO5BQ9ULV0 1848 aa16■□□□□ 0.15
CCDC88C-201ENST00000331194 A0A087WWV3 80 aa15.99■□□□□ 0.15
CCDC88C-201ENST00000331194 ELF2Q15723 593 aa15.99■□□□□ 0.15
CCDC88C-201ENST00000331194 FBXO38Q6PIJ6 1188 aa15.99■□□□□ 0.15
CCDC88C-201ENST00000331194 DNAJC25Q9H1X3 360 aa15.99■□□□□ 0.15
CCDC88C-201ENST00000331194 RBM6P78332 1123 aaKnown RBP15.99■□□□□ 0.15
CCDC88C-201ENST00000331194 ATP6V1DQ9Y5K8 247 aa15.99■□□□□ 0.15
CCDC88C-201ENST00000331194 KRT222Q8N1A0 295 aa15.99■□□□□ 0.15
CCDC88C-201ENST00000331194 LSG1Q9H089 658 aaKnown RBP15.99■□□□□ 0.15
CCDC88C-201ENST00000331194 TNMDQ9H2S6 317 aa15.99■□□□□ 0.15
CCDC88C-201ENST00000331194 HYPKQ9NX55 129 aa15.99■□□□□ 0.15
CCDC88C-201ENST00000331194 CLIP2Q9UDT6 1046 aa15.99■□□□□ 0.15
CCDC88C-201ENST00000331194 CLTCQ00610 1675 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-201ENST00000331194 CDC37L1Q7L3B6 337 aa15.98■□□□□ 0.15
CCDC88C-201ENST00000331194 PTPRMP28827 1452 aa15.98■□□□□ 0.15
CCDC88C-201ENST00000331194 SOX12O15370 315 aa15.98■□□□□ 0.15
CCDC88C-201ENST00000331194 SGSM2O43147 1006 aa15.98■□□□□ 0.15
CCDC88C-201ENST00000331194 TCEANC2Q96MN5 208 aa15.98■□□□□ 0.15
CCDC88C-201ENST00000331194 RAD50Q92878 1312 aa15.98■□□□□ 0.15
CCDC88C-201ENST00000331194 ATP8B2P98198 1209 aa15.97■□□□□ 0.15
CCDC88C-201ENST00000331194 PLA2G4DQ86XP0 818 aa15.97■□□□□ 0.15
CCDC88C-201ENST00000331194 JAKMIP1Q96N16 626 aaKnown RBP15.97■□□□□ 0.15
CCDC88C-201ENST00000331194 STAP2Q9UGK3 403 aa15.97■□□□□ 0.15
CCDC88C-201ENST00000331194 PTH1RQ03431 593 aa15.97■□□□□ 0.15
CCDC88C-201ENST00000331194 ME3Q16798 604 aa15.97■□□□□ 0.15
CCDC88C-201ENST00000331194 CERS3Q8IU89 383 aa15.97■□□□□ 0.15
CCDC88C-201ENST00000331194 PAXBP1Q9Y5B6 917 aa15.97■□□□□ 0.15
CCDC88C-201ENST00000331194 SYCP1Q15431 976 aa15.96■□□□□ 0.15
CCDC88C-201ENST00000331194 PIK3C2BO00750 1634 aa15.96■□□□□ 0.15
CCDC88C-201ENST00000331194 NEXMIFQ5QGS0 1516 aa15.96■□□□□ 0.15
CCDC88C-201ENST00000331194 CAPN2P17655 700 aa15.96■□□□□ 0.14
CCDC88C-201ENST00000331194 LTKP29376 864 aa15.96■□□□□ 0.14
CCDC88C-201ENST00000331194 CCT4P50991 539 aaKnown RBP15.96■□□□□ 0.14
CCDC88C-201ENST00000331194 IL17RAQ96F46 866 aa15.96■□□□□ 0.14
CCDC88C-201ENST00000331194 ZFP91Q96JP5 570 aaPredicted RBP15.96■□□□□ 0.14
CCDC88C-201ENST00000331194 ZNF446Q9NWS9 450 aa15.96■□□□□ 0.14
CCDC88C-201ENST00000331194 NR1I2O75469 434 aa15.95■□□□□ 0.14
CCDC88C-201ENST00000331194 ZNF165P49910 485 aa15.95■□□□□ 0.14
CCDC88C-201ENST00000331194 LARP1BQ659C4 914 aaKnown RBP15.95■□□□□ 0.14
CCDC88C-201ENST00000331194 PRPF40BQ6NWY9 871 aaKnown RBP15.95■□□□□ 0.14
CCDC88C-201ENST00000331194 CPSF1Q10570 1443 aaKnown RBP15.95■□□□□ 0.14
CCDC88C-201ENST00000331194 SSH2Q76I76 1423 aa15.95■□□□□ 0.14
CCDC88C-201ENST00000331194 LRRN4CLQ8ND94 238 aa15.95■□□□□ 0.14
CCDC88C-201ENST00000331194 ZNF397Q8NF99 534 aaPredicted RBP15.95■□□□□ 0.14
CCDC88C-201ENST00000331194 GTF3C6Q969F1 213 aa15.95■□□□□ 0.14
CCDC88C-201ENST00000331194 PDRG1Q9NUG6 133 aa15.95■□□□□ 0.14
CCDC88C-201ENST00000331194 KIF20BQ96Q89 1820 aa15.95■□□□□ 0.14
CCDC88C-201ENST00000331194 TIGD1Q96MW7 591 aa15.94■□□□□ 0.14
CCDC88C-201ENST00000331194 USP16Q9Y5T5 823 aa15.94■□□□□ 0.14
CCDC88C-201ENST00000331194 SURF6O75683 361 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-201ENST00000331194 FILIP1Q7Z7B0 1213 aa15.94■□□□□ 0.14
CCDC88C-201ENST00000331194 PI4K2BQ8TCG2 481 aa15.94■□□□□ 0.14
CCDC88C-201ENST00000331194 TSPYL4Q9UJ04 414 aa15.94■□□□□ 0.14
CCDC88C-201ENST00000331194 EIF4A2Q14240 407 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-201ENST00000331194 TUBGCP6Q96RT7 1819 aa15.93■□□□□ 0.14
CCDC88C-201ENST00000331194 GOLGA6L4A6NEF3 574 aa15.93■□□□□ 0.14
CCDC88C-201ENST00000331194 FBXW7Q969H0 707 aa15.93■□□□□ 0.14
CCDC88C-201ENST00000331194 KRT85P78386 507 aa15.93■□□□□ 0.14
CCDC88C-201ENST00000331194 PTPN14Q15678 1187 aa15.93■□□□□ 0.14
CCDC88C-201ENST00000331194 LRRC8AQ8IWT6 810 aa15.93■□□□□ 0.14
CCDC88C-201ENST00000331194 COG3Q96JB2 828 aa15.93■□□□□ 0.14
CCDC88C-201ENST00000331194 TPCN1Q9ULQ1 816 aa15.93■□□□□ 0.14
CCDC88C-201ENST00000331194 ERBB3P21860 1342 aa15.93■□□□□ 0.14
CCDC88C-201ENST00000331194 METP08581 1390 aa15.93■□□□□ 0.14
CCDC88C-201ENST00000331194 KLHL34Q8N239 644 aa15.92■□□□□ 0.14
CCDC88C-201ENST00000331194 CCDC66A2RUB6 948 aa15.92■□□□□ 0.14
CCDC88C-201ENST00000331194 PREX1Q8TCU6 1659 aa15.92■□□□□ 0.14
CCDC88C-201ENST00000331194 SKILP12757 684 aa15.92■□□□□ 0.14
CCDC88C-201ENST00000331194 FLIIQ13045 1269 aa15.91■□□□□ 0.14
CCDC88C-201ENST00000331194 STK3Q13188 491 aa15.91■□□□□ 0.14
CCDC88C-201ENST00000331194 CEBPZQ03701 1054 aaKnown RBP15.91■□□□□ 0.14
CCDC88C-201ENST00000331194 ERCC6LQ2NKX8 1250 aa15.91■□□□□ 0.14
CCDC88C-201ENST00000331194 ERCC4Q92889 916 aaPredicted RBP15.91■□□□□ 0.14
CCDC88C-201ENST00000331194 SPATA32Q96LK8 384 aa15.91■□□□□ 0.14
CCDC88C-201ENST00000331194 HAP1P54257 671 aaPredicted RBP15.9■□□□□ 0.14
CCDC88C-201ENST00000331194 HSP90AB2PQ58FF8 381 aa15.9■□□□□ 0.14
CCDC88C-201ENST00000331194 TDRD7Q8NHU6 1098 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-201ENST00000331194 DDX11Q96FC9 970 aa15.9■□□□□ 0.14
CCDC88C-201ENST00000331194 PGBD1Q96JS3 809 aa15.9■□□□□ 0.14
CCDC88C-201ENST00000331194 USP44Q9H0E7 712 aa15.9■□□□□ 0.14
CCDC88C-201ENST00000331194 C11orf57Q6ZUT1 292 aaPredicted RBP15.9■□□□□ 0.14
CCDC88C-201ENST00000331194 PPP1R42Q7Z4L9 355 aa15.9■□□□□ 0.14
CCDC88C-201ENST00000331194 HNRNPH2P55795 449 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-201ENST00000331194 BICD2Q8TD16 824 aa15.9■□□□□ 0.14
CCDC88C-201ENST00000331194 FAM53CQ9NYF3 392 aa15.9■□□□□ 0.14
CCDC88C-201ENST00000331194 GNAI3P08754 354 aa15.89■□□□□ 0.13
CCDC88C-201ENST00000331194 LARP1Q6PKG0 1096 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-201ENST00000331194 A2ML1A8K2U0 1454 aa15.89■□□□□ 0.13
CCDC88C-201ENST00000331194 NYAP1Q6ZVC0 841 aa15.89■□□□□ 0.13
CCDC88C-201ENST00000331194 RHPN1Q8TCX5 695 aa15.89■□□□□ 0.13
CCDC88C-201ENST00000331194 CYP46A1Q9Y6A2 500 aa15.89■□□□□ 0.13
CCDC88C-201ENST00000331194 TAF6LQ9Y6J9 622 aa15.89■□□□□ 0.13
CCDC88C-201ENST00000331194 TNRQ92752 1358 aa15.89■□□□□ 0.13
CCDC88C-201ENST00000331194 CCDC69A6NI79 296 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 154.1 ms