RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 PALD1Q9ULE6 856 aa9.86□□□□□ -0.83
CNOT4-201ENST00000315544 ISY1Q9ULR0 285 aaKnown RBP9.86□□□□□ -0.83
CNOT4-201ENST00000315544 ANO8Q9HCE9 1232 aaPredicted RBP9.86□□□□□ -0.83
CNOT4-201ENST00000315544 MYH1P12882 1939 aa9.86□□□□□ -0.83
CNOT4-201ENST00000315544 FOXP2O15409 715 aa9.86□□□□□ -0.83
CNOT4-201ENST00000315544 BRD1O95696 1058 aa9.85□□□□□ -0.83
CNOT4-201ENST00000315544 PIP4K2BP78356 416 aa9.85□□□□□ -0.83
CNOT4-201ENST00000315544 PLSCR1O15162 318 aa9.85□□□□□ -0.83
CNOT4-201ENST00000315544 KCNA4P22459 653 aa9.85□□□□□ -0.83
CNOT4-201ENST00000315544 RBM43Q6ZSC3 357 aaKnown RBP9.85□□□□□ -0.83
CNOT4-201ENST00000315544 BEND3Q5T5X7 828 aa9.85□□□□□ -0.83
CNOT4-201ENST00000315544 SMC4Q9NTJ3 1288 aa9.85□□□□□ -0.83
CNOT4-201ENST00000315544 RPAP2Q8IXW5 612 aaPredicted RBP9.84□□□□□ -0.83
CNOT4-201ENST00000315544 RFX5P48382 616 aaPredicted RBP9.84□□□□□ -0.83
CNOT4-201ENST00000315544 RGS3P49796 1198 aa9.84□□□□□ -0.83
CNOT4-201ENST00000315544 LSG1Q9H089 658 aaKnown RBP9.84□□□□□ -0.83
CNOT4-201ENST00000315544 USP21Q9UK80 565 aa9.84□□□□□ -0.83
CNOT4-201ENST00000315544 AP5Z1O43299 807 aa9.84□□□□□ -0.83
CNOT4-201ENST00000315544 HOXB7P09629 217 aa9.84□□□□□ -0.83
CNOT4-201ENST00000315544 TAF1P21675 1872 aa9.83□□□□□ -0.84
CNOT4-201ENST00000315544 RGL2O15211 777 aa9.83□□□□□ -0.84
CNOT4-201ENST00000315544 CFAP53Q96M91 514 aa9.83□□□□□ -0.84
CNOT4-201ENST00000315544 PDE1AP54750 535 aa9.83□□□□□ -0.84
CNOT4-201ENST00000315544 KLHL40Q2TBA0 621 aa9.83□□□□□ -0.84
CNOT4-201ENST00000315544 CHMP5Q9NZZ3 219 aa9.83□□□□□ -0.84
CNOT4-201ENST00000315544 CARMIL3Q8ND23 1372 aa9.82□□□□□ -0.84
CNOT4-201ENST00000315544 EIF4A1P60842 406 aaKnown RBP9.82□□□□□ -0.84
CNOT4-201ENST00000315544 TSGA10IPQ3SY00 556 aa9.82□□□□□ -0.84
CNOT4-201ENST00000315544 USPL1Q5W0Q7 1092 aa9.82□□□□□ -0.84
CNOT4-201ENST00000315544 TNNT2P45379 298 aaPredicted RBP9.82□□□□□ -0.84
CNOT4-201ENST00000315544 SALL1Q9NSC2 1324 aa9.82□□□□□ -0.84
CNOT4-201ENST00000315544 K7ELQ4 463 aaPredicted RBP9.81□□□□□ -0.84
CNOT4-201ENST00000315544 HSPA4P34932 840 aa9.81□□□□□ -0.84
CNOT4-201ENST00000315544 ATP8B2P98198 1209 aa9.81□□□□□ -0.84
CNOT4-201ENST00000315544 WDR90Q96KV7 1748 aa9.81□□□□□ -0.84
CNOT4-201ENST00000315544 RFX7Q2KHR2 1363 aa9.81□□□□□ -0.84
CNOT4-201ENST00000315544 HMOX1P09601 288 aa9.81□□□□□ -0.84
CNOT4-201ENST00000315544 RXRBP28702 533 aa9.81□□□□□ -0.84
CNOT4-201ENST00000315544 C1orf115Q9H7X2 142 aa9.81□□□□□ -0.84
CNOT4-201ENST00000315544 HDGFL2Q7Z4V5 671 aaPredicted RBP9.81□□□□□ -0.84
CNOT4-201ENST00000315544 BAG4O95429 457 aaKnown RBP9.8□□□□□ -0.84
CNOT4-201ENST00000315544 MCM10Q7L590 875 aa9.8□□□□□ -0.84
CNOT4-201ENST00000315544 CNGB1Q14028 1251 aaPredicted RBP9.8□□□□□ -0.84
CNOT4-201ENST00000315544 FBXL16Q8N461 479 aa9.8□□□□□ -0.84
CNOT4-201ENST00000315544 AGXT2Q9BYV1 514 aa9.8□□□□□ -0.84
CNOT4-201ENST00000315544 QTRT2Q9H974 415 aaKnown RBP9.8□□□□□ -0.84
CNOT4-201ENST00000315544 ZNF500O60304 480 aaPredicted RBP9.79□□□□□ -0.84
CNOT4-201ENST00000315544 CHMLP26374 656 aa9.79□□□□□ -0.84
CNOT4-201ENST00000315544 AKT1S1Q96B36 256 aa9.79□□□□□ -0.84
CNOT4-201ENST00000315544 SIPA1L1O43166 1804 aa9.79□□□□□ -0.84
CNOT4-201ENST00000315544 LARP1Q6PKG0 1096 aaKnown RBP9.79□□□□□ -0.84
CNOT4-201ENST00000315544 ZGPATQ8N5A5 531 aaKnown RBP9.79□□□□□ -0.84
CNOT4-201ENST00000315544 MARCH10Q8NA82 808 aaPredicted RBP9.79□□□□□ -0.84
CNOT4-201ENST00000315544 INTS4Q96HW7 963 aaKnown RBP9.79□□□□□ -0.84
CNOT4-201ENST00000315544 TRAK2O60296 914 aa9.78□□□□□ -0.84
CNOT4-201ENST00000315544 ANAPC15P60006 121 aa9.78□□□□□ -0.84
CNOT4-201ENST00000315544 SRPK2P78362 688 aaKnown RBP9.78□□□□□ -0.84
CNOT4-201ENST00000315544 LNPKQ9C0E8 428 aa9.78□□□□□ -0.84
CNOT4-201ENST00000315544 TMEM63CQ9P1W3 806 aa9.78□□□□□ -0.84
CNOT4-201ENST00000315544 SSFA2P28290 1259 aa9.78□□□□□ -0.84
CNOT4-201ENST00000315544 PROM2Q8N271 834 aa9.78□□□□□ -0.84
CNOT4-201ENST00000315544 FAM53CQ9NYF3 392 aa9.78□□□□□ -0.84
CNOT4-201ENST00000315544 MYH6P13533 1939 aa9.78□□□□□ -0.84
CNOT4-201ENST00000315544 PNNQ9H307 717 aaKnown RBP9.78□□□□□ -0.84
CNOT4-201ENST00000315544 ADD1P35611 737 aaKnown RBP9.77□□□□□ -0.84
CNOT4-201ENST00000315544 NECTIN1Q15223 517 aa9.77□□□□□ -0.84
CNOT4-201ENST00000315544 RABL6Q3YEC7 729 aaPredicted RBP9.77□□□□□ -0.84
CNOT4-201ENST00000315544 CHAMP1Q96JM3 812 aa9.77□□□□□ -0.84
CNOT4-201ENST00000315544 ESYT1Q9BSJ8 1104 aa9.77□□□□□ -0.84
CNOT4-201ENST00000315544 TERF1P54274 439 aa9.77□□□□□ -0.85
CNOT4-201ENST00000315544 NID2Q14112 1375 aa9.77□□□□□ -0.85
CNOT4-201ENST00000315544 HS1BP3Q53T59 392 aa9.77□□□□□ -0.85
CNOT4-201ENST00000315544 BTG4Q9NY30 223 aa9.77□□□□□ -0.85
CNOT4-201ENST00000315544 C10orf71Q711Q0 1435 aa9.77□□□□□ -0.85
CNOT4-201ENST00000315544 NBPF6Q5VWK0 638 aa9.76□□□□□ -0.85
CNOT4-201ENST00000315544 NBPF4Q96M43 638 aa9.76□□□□□ -0.85
CNOT4-201ENST00000315544 GTF2F1P35269 517 aaKnown RBP eCLIP9.76□□□□□ -0.85
CNOT4-201ENST00000315544 BCL11BQ9C0K0 894 aaPredicted RBP9.76□□□□□ -0.85
CNOT4-201ENST00000315544 RAD50Q92878 1312 aa9.76□□□□□ -0.85
CNOT4-201ENST00000315544 SULT6B1Q6IMI4 303 aa9.76□□□□□ -0.85
CNOT4-201ENST00000315544 API5Q9BZZ5 524 aaKnown RBP9.76□□□□□ -0.85
CNOT4-201ENST00000315544 ITPRIPQ8IWB1 547 aa9.75□□□□□ -0.85
CNOT4-201ENST00000315544 TAF6LQ9Y6J9 622 aa9.75□□□□□ -0.85
CNOT4-201ENST00000315544 CDC45O75419 566 aa9.75□□□□□ -0.85
CNOT4-201ENST00000315544 RBSNQ9H1K0 784 aa9.75□□□□□ -0.85
CNOT4-201ENST00000315544 GRPEL1Q9HAV7 217 aa9.75□□□□□ -0.85
CNOT4-201ENST00000315544 ZNF609O15014 1411 aa9.75□□□□□ -0.85
CNOT4-201ENST00000315544 IPO8O15397 1037 aaKnown RBP9.75□□□□□ -0.85
CNOT4-201ENST00000315544 CABLES1Q8TDN4 633 aa9.75□□□□□ -0.85
CNOT4-201ENST00000315544 SAFB2Q14151 953 aaKnown RBP eCLIP9.74□□□□□ -0.85
CNOT4-201ENST00000315544 SEPT12Q8IYM1 358 aa9.74□□□□□ -0.85
CNOT4-201ENST00000315544 NGLY1Q96IV0 654 aa9.74□□□□□ -0.85
CNOT4-201ENST00000315544 IGKV5-2P06315 115 aa9.74□□□□□ -0.85
CNOT4-201ENST00000315544 NEUROD2Q15784 382 aa9.74□□□□□ -0.85
CNOT4-201ENST00000315544 RASEFQ8IZ41 740 aa9.74□□□□□ -0.85
CNOT4-201ENST00000315544 ZBTB22O15209 634 aa9.74□□□□□ -0.85
CNOT4-201ENST00000315544 SGSM2O43147 1006 aa9.74□□□□□ -0.85
CNOT4-201ENST00000315544 SASH1O94885 1247 aa9.74□□□□□ -0.85
CNOT4-201ENST00000315544 EVCP57679 992 aa9.74□□□□□ -0.85
CNOT4-201ENST00000315544 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.74□□□□□ -0.857e-7■■■■□ 23.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms