RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 IMPACTQ9P2X3 320 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 ABCA8O94911 1581 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 NEUROD2Q15784 382 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 CCDC183Q5T5S1 534 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 LCMT1Q9UIC8 334 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 TRAK2O60296 914 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 PRPF40AO75400 957 aaKnown RBP4.66□□□□□ -1.66
USH2A-201ENST00000307340 APPP05067 770 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 AIMP1Q12904 312 aaKnown RBP4.66□□□□□ -1.66
USH2A-201ENST00000307340 KIF5CO60282 957 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 TPCN1Q9ULQ1 816 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 GOLGA6CA6NDK9 693 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 GOLGA6BA6NDN3 693 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 GOLGA6DP0CG33 693 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 TNPO1Q92973 898 aaKnown RBP4.66□□□□□ -1.66
USH2A-201ENST00000307340 SIRT1Q96EB6 747 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 GOLGA6AQ9NYA3 693 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 DBF4Q9UBU7 674 aaPredicted RBP4.66□□□□□ -1.66
USH2A-201ENST00000307340 LARP1Q6PKG0 1096 aaKnown RBP4.65□□□□□ -1.66
USH2A-201ENST00000307340 STAMBPO95630 424 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 MYL1P05976 194 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 NFKBIBQ15653 356 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 DNAJC21Q5F1R6 531 aaKnown RBP4.65□□□□□ -1.66
USH2A-201ENST00000307340 TRAK1Q9UPV9 953 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 TRPM1Q7Z4N2 1603 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 A2MP01023 1474 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 FYB1O15117 783 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 RIMS2Q9UQ26 1411 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 KDM5CP41229 1560 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 APBB1IPQ7Z5R6 666 aaPredicted RBP4.65□□□□□ -1.66
USH2A-201ENST00000307340 BLMP54132 1417 aaPredicted RBP4.65□□□□□ -1.66
USH2A-201ENST00000307340 TRIML1Q8N9V2 468 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 CLIP2Q9UDT6 1046 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 SPTY2D1Q68D10 685 aaPredicted RBP4.65□□□□□ -1.66
USH2A-201ENST00000307340 CHD1LQ86WJ1 897 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 IQCA1Q86XH1 822 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 PIK3R4Q99570 1358 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 CDK5RAP3Q96JB5 506 aa4.65□□□□□ -1.66
USH2A-201ENST00000307340 SHTN1A0MZ66 631 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 CALM1P0DP23 149 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 CALM2P0DP24 149 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 CALM3P0DP25 149 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 CDCA7Q9BWT1 371 aaPredicted RBP4.65□□□□□ -1.67
USH2A-201ENST00000307340 TSHZ2Q9NRE2 1034 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 TNNQ9UQP3 1299 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 PLCG2P16885 1265 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 GNAT3A8MTJ3 354 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 EDC4Q6P2E9 1401 aaKnown RBP4.65□□□□□ -1.67
USH2A-201ENST00000307340 MAP2P11137 1827 aaKnown RBP4.65□□□□□ -1.67
USH2A-201ENST00000307340 BICDL2A1A5D9 508 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 CFAP157Q5JU67 520 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 LMNB2Q03252 620 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 FMNL2Q96PY5 1086 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 STK26Q9P289 416 aa4.65□□□□□ -1.67
USH2A-201ENST00000307340 CALML3P27482 149 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 ESPNB1AK53 854 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 RASSF2P50749 326 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 RUBCNQ92622 972 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 MAP3K11Q16584 847 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 LMBR1Q8WVP7 490 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 UTP14AQ9BVJ6 771 aaKnown RBP4.64□□□□□ -1.67
USH2A-201ENST00000307340 MAGEF1Q9HAY2 307 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 GRPEL1Q9HAV7 217 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 NBPF7P0C2Y1 421 aaPredicted RBP4.64□□□□□ -1.67
USH2A-201ENST00000307340 KIAA1524Q8TCG1 905 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 UBXN4Q92575 508 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 CDC5LQ99459 802 aaKnown RBP4.64□□□□□ -1.67
USH2A-201ENST00000307340 TTLL5Q6EMB2 1281 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 CRACR2AQ9BSW2 395 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 SLMAPQ14BN4 828 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 CCDC38Q502W7 563 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 FAM81BQ96LP2 452 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 TSKSQ9UJT2 592 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 SH2D4BQ5SQS7 431 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 TRIM5Q9C035 493 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 CEP170Q5SW79 1584 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 SEPT7Q16181 437 aaKnown RBP4.64□□□□□ -1.67
USH2A-201ENST00000307340 BLOC1S2Q6QNY1 142 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 TNMDQ9H2S6 317 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 TWISTNBQ3B726 338 aaPredicted RBP4.64□□□□□ -1.67
USH2A-201ENST00000307340 ZNF608Q9ULD9 1512 aaPredicted RBP4.64□□□□□ -1.67
USH2A-201ENST00000307340 SPA17Q15506 151 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 NUTM1Q86Y26 1132 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 MSANTD4Q8NCY6 345 aa4.64□□□□□ -1.67
USH2A-201ENST00000307340 NFE2L2Q16236 605 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 RUNDC3BQ96NL0 473 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 NPHP3Q7Z494 1330 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 KIF20BQ96Q89 1820 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 TSPYL4Q9UJ04 414 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 CSB-PGBD3P0DP91 1061 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 GSTO1P78417 241 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 ZNF771Q7L3S4 317 aaPredicted RBP4.63□□□□□ -1.67
USH2A-201ENST00000307340 KCTD17Q8N5Z5 321 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 ARFGAP2Q8N6H7 521 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 CTDP1Q9Y5B0 961 aaPredicted RBP4.63□□□□□ -1.67
USH2A-201ENST00000307340 MTHFSP49914 203 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 FCHSD1Q86WN1 690 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 ANO2Q9NQ90 1003 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 PDE4BQ07343 736 aa4.63□□□□□ -1.67
USH2A-201ENST00000307340 BRAPQ7Z569 592 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms