RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 TNS2Q63HR2 1409 aa8.06□□□□□ -1.12
USP47-201ENST00000305481 CD2BP2O95400 341 aaKnown RBP8.06□□□□□ -1.12
USP47-201ENST00000305481 SNX21Q969T3 373 aa8.06□□□□□ -1.12
USP47-201ENST00000305481 KIF1BPQ96EK5 621 aa8.06□□□□□ -1.12
USP47-201ENST00000305481 COL22A1Q8NFW1 1626 aaPredicted RBP8.06□□□□□ -1.12
USP47-201ENST00000305481 PTCD1O75127 700 aaKnown RBP8.05□□□□□ -1.12
USP47-201ENST00000305481 EPHA10Q5JZY3 1008 aa8.05□□□□□ -1.12
USP47-201ENST00000305481 PI4K2BQ8TCG2 481 aa8.05□□□□□ -1.12
USP47-201ENST00000305481 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.05□□□□□ -1.12
USP47-201ENST00000305481 DISP2A7MBM2 1401 aa8.05□□□□□ -1.12
USP47-201ENST00000305481 A1BGP04217 495 aa8.05□□□□□ -1.12
USP47-201ENST00000305481 SPRYD3Q8NCJ5 442 aa8.05□□□□□ -1.12
USP47-201ENST00000305481 COL14A1Q05707 1796 aaKnown RBP8.05□□□□□ -1.12
USP47-201ENST00000305481 NEXNQ0ZGT2 675 aa8.05□□□□□ -1.12
USP47-201ENST00000305481 JARID2Q92833 1246 aaPredicted RBP8.05□□□□□ -1.12
USP47-201ENST00000305481 AOX1Q06278 1338 aa8.04□□□□□ -1.12
USP47-201ENST00000305481 ARFGEF2Q9Y6D5 1785 aa8.04□□□□□ -1.12
USP47-201ENST00000305481 PLBD2Q8NHP8 589 aa8.04□□□□□ -1.12
USP47-201ENST00000305481 ATP5J2-PTCD1G3V325 749 aa8.04□□□□□ -1.12
USP47-201ENST00000305481 HSP90AB4PQ58FF6 505 aa8.04□□□□□ -1.12
USP47-201ENST00000305481 TTLL7Q6ZT98 887 aa8.04□□□□□ -1.12
USP47-201ENST00000305481 PIGBQ92521 554 aa8.04□□□□□ -1.12
USP47-201ENST00000305481 ERBB4Q15303 1308 aa8.04□□□□□ -1.12
USP47-201ENST00000305481 ERC2O15083 957 aa8.04□□□□□ -1.12
USP47-201ENST00000305481 FRAT2O75474 233 aaPredicted RBP8.04□□□□□ -1.12
USP47-201ENST00000305481 CHMLP26374 656 aa8.04□□□□□ -1.12
USP47-201ENST00000305481 ASAP1Q9ULH1 1129 aa8.04□□□□□ -1.12
USP47-201ENST00000305481 HDAC5Q9UQL6 1122 aa8.04□□□□□ -1.12
USP47-201ENST00000305481 SASH1O94885 1247 aa8.03□□□□□ -1.12
USP47-201ENST00000305481 CASP7P55210 303 aa8.03□□□□□ -1.12
USP47-201ENST00000305481 RTL5Q5HYW3 569 aaPredicted RBP8.03□□□□□ -1.12
USP47-201ENST00000305481 CASC1Q6TDU7 716 aa8.03□□□□□ -1.12
USP47-201ENST00000305481 HSCBQ8IWL3 235 aa8.03□□□□□ -1.12
USP47-201ENST00000305481 RILPL2Q969X0 211 aa8.03□□□□□ -1.12
USP47-201ENST00000305481 ESYT1Q9BSJ8 1104 aa8.03□□□□□ -1.12
USP47-201ENST00000305481 USP42Q9H9J4 1324 aaKnown RBP8.03□□□□□ -1.12
USP47-201ENST00000305481 TRIM6-TRIM34B2RNG4 842 aa8.03□□□□□ -1.12
USP47-201ENST00000305481 KLHDC4Q8TBB5 520 aa8.03□□□□□ -1.12
USP47-201ENST00000305481 IL25Q9H293 177 aa8.03□□□□□ -1.12
USP47-201ENST00000305481 TMOD3Q9NYL9 352 aa8.03□□□□□ -1.12
USP47-201ENST00000305481 MAP4K4O95819 1239 aaPredicted RBP8.02□□□□□ -1.12
USP47-201ENST00000305481 DDIT3P35638 169 aa8.02□□□□□ -1.12
USP47-201ENST00000305481 ATG3Q9NT62 314 aa8.02□□□□□ -1.12
USP47-201ENST00000305481 OS9Q13438 667 aaPredicted RBP8.02□□□□□ -1.13
USP47-201ENST00000305481 NUP188Q5SRE5 1749 aa8.02□□□□□ -1.13
USP47-201ENST00000305481 AFDNP55196 1824 aaKnown RBP8.02□□□□□ -1.13
USP47-201ENST00000305481 REC8O95072 547 aa8.02□□□□□ -1.13
USP47-201ENST00000305481 RFX5P48382 616 aaPredicted RBP8.02□□□□□ -1.13
USP47-201ENST00000305481 RABL6Q3YEC7 729 aaPredicted RBP8.02□□□□□ -1.13
USP47-201ENST00000305481 UBE3BQ7Z3V4 1068 aa8.02□□□□□ -1.13
USP47-201ENST00000305481 COL15A1P39059 1388 aa8.02□□□□□ -1.13
USP47-201ENST00000305481 A0A087WZG4 1122 aa8.01□□□□□ -1.13
USP47-201ENST00000305481 ITGB4P16144 1822 aa8.01□□□□□ -1.13
USP47-201ENST00000305481 PLCH1Q4KWH8 1693 aa8.01□□□□□ -1.13
USP47-201ENST00000305481 ADAMTS2O95450 1211 aa8.01□□□□□ -1.13
USP47-201ENST00000305481 ERC1Q8IUD2 1116 aa8.01□□□□□ -1.13
USP47-201ENST00000305481 CLASRPQ8N2M8 674 aaKnown RBP8.01□□□□□ -1.13
USP47-201ENST00000305481 EAF2Q96CJ1 260 aaPredicted RBP8.01□□□□□ -1.13
USP47-201ENST00000305481 SIL1Q9H173 461 aa8.01□□□□□ -1.13
USP47-201ENST00000305481 PODXL2Q9NZ53 605 aa8.01□□□□□ -1.13
USP47-201ENST00000305481 H7C1W4 665 aa8.01□□□□□ -1.13
USP47-201ENST00000305481 SLC4A9Q96Q91 983 aa8.01□□□□□ -1.13
USP47-201ENST00000305481 ZBTB3Q9H5J0 574 aa8.01□□□□□ -1.13
USP47-201ENST00000305481 TTC41PQ6P2S7 1318 aa8.01□□□□□ -1.13
USP47-201ENST00000305481 BCL9O00512 1426 aa8.01□□□□□ -1.13
USP47-201ENST00000305481 PTPN12Q05209 780 aaKnown RBP8□□□□□ -1.13
USP47-201ENST00000305481 RABEP1Q15276 862 aa8□□□□□ -1.13
USP47-201ENST00000305481 DNAJC10Q8IXB1 793 aa8□□□□□ -1.13
USP47-201ENST00000305481 PHLPP1O60346 1717 aa8□□□□□ -1.13
USP47-201ENST00000305481 K7ELQ4 463 aaPredicted RBP8□□□□□ -1.13
USP47-201ENST00000305481 FOXO4P98177 505 aa8□□□□□ -1.13
USP47-201ENST00000305481 G3BP1Q13283 466 aaKnown RBP eCLIP8□□□□□ -1.13
USP47-201ENST00000305481 AACSQ86V21 672 aa8□□□□□ -1.13
USP47-201ENST00000305481 VSIG10Q8N0Z9 540 aa8□□□□□ -1.13
USP47-201ENST00000305481 COPRSQ9NQ92 184 aa8□□□□□ -1.13
USP47-201ENST00000305481 TLR7Q9NYK1 1049 aaKnown RBP8□□□□□ -1.13
USP47-201ENST00000305481 EXOC5O00471 708 aa8□□□□□ -1.13
USP47-201ENST00000305481 ECHDC1Q9NTX5 307 aa8□□□□□ -1.13
USP47-201ENST00000305481 TJP1Q07157 1748 aa8□□□□□ -1.13
USP47-201ENST00000305481 WNK3Q9BYP7 1800 aa7.99□□□□□ -1.13
USP47-201ENST00000305481 SPATA31A1Q5TZJ5 1347 aa7.99□□□□□ -1.13
USP47-201ENST00000305481 GLRX3O76003 335 aaKnown RBP7.99□□□□□ -1.13
USP47-201ENST00000305481 PALD1Q9ULE6 856 aa7.99□□□□□ -1.13
USP47-201ENST00000305481 NRAPQ86VF7 1730 aa7.99□□□□□ -1.13
USP47-201ENST00000305481 IFIT2P09913 472 aaKnown RBP7.99□□□□□ -1.13
USP47-201ENST00000305481 DEKP35659 375 aaKnown RBP7.99□□□□□ -1.13
USP47-201ENST00000305481 CCDC8Q9H0W5 538 aaPredicted RBP7.99□□□□□ -1.13
USP47-201ENST00000305481 CWC25Q9NXE8 425 aaPredicted RBP7.99□□□□□ -1.13
USP47-201ENST00000305481 CHMP5Q9NZZ3 219 aa7.99□□□□□ -1.13
USP47-201ENST00000305481 LRP6O75581 1613 aa7.99□□□□□ -1.13
USP47-201ENST00000305481 LMBR1LQ6UX01 489 aa7.99□□□□□ -1.13
USP47-201ENST00000305481 ANO2Q9NQ90 1003 aa7.99□□□□□ -1.13
USP47-201ENST00000305481 AK9Q5TCS8 1911 aa7.98□□□□□ -1.13
USP47-201ENST00000305481 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.98□□□□□ -1.13
USP47-201ENST00000305481 CNTROBQ8N137 903 aa7.98□□□□□ -1.13
USP47-201ENST00000305481 CCDC191Q8NCU4 936 aa7.98□□□□□ -1.13
USP47-201ENST00000305481 SGSM2O43147 1006 aa7.98□□□□□ -1.13
USP47-201ENST00000305481 PRIM1P49642 420 aaKnown RBP7.98□□□□□ -1.13
USP47-201ENST00000305481 PIP4K2BP78356 416 aa7.98□□□□□ -1.13
USP47-201ENST00000305481 ISCA1Q9BUE6 129 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms