RNA–Protein interactions for RNA: ENST00000295701.9

CNOT9-202, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

TSL 1 (best) BASIC

Gene CNOT9, Length 1,126 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-202ENST00000295701 C1orf141Q5JVX7 400 aa12.7□□□□□ -0.38
CNOT9-202ENST00000295701 CCDC87Q9NVE4 849 aa12.7□□□□□ -0.38
CNOT9-202ENST00000295701 PARP3Q9Y6F1 533 aa12.7□□□□□ -0.38
CNOT9-202ENST00000295701 SCN11AQ9UI33 1791 aa12.7□□□□□ -0.38
CNOT9-202ENST00000295701 TJP1Q07157 1748 aa12.69□□□□□ -0.38
CNOT9-202ENST00000295701 INTS5Q6P9B9 1019 aaKnown RBP12.69□□□□□ -0.38
CNOT9-202ENST00000295701 LGR6Q9HBX8 967 aa12.69□□□□□ -0.38
CNOT9-202ENST00000295701 DDR1Q08345 913 aa12.68□□□□□ -0.38
CNOT9-202ENST00000295701 PLEKHG2Q9H7P9 1386 aa12.68□□□□□ -0.38
CNOT9-202ENST00000295701 SLC39A6Q13433 755 aa12.67□□□□□ -0.38
CNOT9-202ENST00000295701 DNAJC10Q8IXB1 793 aa12.67□□□□□ -0.38
CNOT9-202ENST00000295701 MICALL2Q8IY33 904 aa12.67□□□□□ -0.38
CNOT9-202ENST00000295701 NMRK2Q9NPI5 230 aa12.67□□□□□ -0.38
CNOT9-202ENST00000295701 KNSTRNQ9Y448 316 aa12.67□□□□□ -0.38
CNOT9-202ENST00000295701 ARFGEF1Q9Y6D6 1849 aa12.67□□□□□ -0.38
CNOT9-202ENST00000295701 USP42Q9H9J4 1324 aaKnown RBP12.66□□□□□ -0.38
CNOT9-202ENST00000295701 HMOX1P09601 288 aa12.66□□□□□ -0.38
CNOT9-202ENST00000295701 CHRNA5P30532 468 aa12.66□□□□□ -0.38
CNOT9-202ENST00000295701 AMER1Q5JTC6 1135 aaPredicted RBP12.66□□□□□ -0.38
CNOT9-202ENST00000295701 IFFO2Q5TF58 517 aa12.66□□□□□ -0.38
CNOT9-202ENST00000295701 ADAMTS7Q9UKP4 1686 aa12.66□□□□□ -0.38
CNOT9-202ENST00000295701 SBF1O95248 1867 aa12.65□□□□□ -0.38
CNOT9-202ENST00000295701 TM4SF1P30408 202 aa12.65□□□□□ -0.38
CNOT9-202ENST00000295701 AKAP4Q5JQC9 854 aa12.65□□□□□ -0.38
CNOT9-202ENST00000295701 C9orf131Q5VYM1 1079 aa12.65□□□□□ -0.38
CNOT9-202ENST00000295701 USPL1Q5W0Q7 1092 aa12.65□□□□□ -0.38
CNOT9-202ENST00000295701 AFDNP55196 1824 aaKnown RBP12.65□□□□□ -0.39
CNOT9-202ENST00000295701 POLRMTO00411 1230 aaKnown RBP12.64□□□□□ -0.39
CNOT9-202ENST00000295701 RNMTO43148 476 aaKnown RBP12.64□□□□□ -0.39
CNOT9-202ENST00000295701 FBXO22Q8NEZ5 403 aa12.64□□□□□ -0.39
CNOT9-202ENST00000295701 CCER1Q8TC90 406 aaPredicted RBP12.64□□□□□ -0.39
CNOT9-202ENST00000295701 SLC52A2Q9HAB3 445 aa12.64□□□□□ -0.39
CNOT9-202ENST00000295701 PIM2Q9P1W9 311 aa12.64□□□□□ -0.39
CNOT9-202ENST00000295701 CYP19A1P11511 503 aaPredicted RBP12.63□□□□□ -0.39
CNOT9-202ENST00000295701 MTHFSDQ2M296 383 aaKnown RBP12.63□□□□□ -0.39
CNOT9-202ENST00000295701 SOS1Q07889 1333 aaPredicted RBP12.62□□□□□ -0.39
CNOT9-202ENST00000295701 CCDC88AQ3V6T2 1871 aa12.62□□□□□ -0.39
CNOT9-202ENST00000295701 TOMM70O94826 608 aa12.62□□□□□ -0.39
CNOT9-202ENST00000295701 CNGB1Q14028 1251 aaPredicted RBP12.62□□□□□ -0.39
CNOT9-202ENST00000295701 DALRD3Q5D0E6 543 aaKnown RBP12.62□□□□□ -0.39
CNOT9-202ENST00000295701 MFRPQ9BY79 579 aa12.62□□□□□ -0.39
CNOT9-202ENST00000295701 KCPQ6ZWJ8 1503 aa12.62□□□□□ -0.39
CNOT9-202ENST00000295701 KIF7Q2M1P5 1343 aa12.62□□□□□ -0.39
CNOT9-202ENST00000295701 ZPR1O75312 459 aa12.61□□□□□ -0.39
CNOT9-202ENST00000295701 HTRA3P83110 453 aa12.61□□□□□ -0.39
CNOT9-202ENST00000295701 CC2D1BQ5T0F9 858 aaKnown RBP12.61□□□□□ -0.39
CNOT9-202ENST00000295701 DNAJC5GQ8N7S2 189 aa12.61□□□□□ -0.39
CNOT9-202ENST00000295701 BCL2L12Q9HB09 334 aa12.61□□□□□ -0.39
CNOT9-202ENST00000295701 ZBTB1Q9Y2K1 713 aa12.61□□□□□ -0.39
CNOT9-202ENST00000295701 PER1O15534 1290 aaPredicted RBP12.6□□□□□ -0.39
CNOT9-202ENST00000295701 NFIXQ14938 502 aa12.6□□□□□ -0.39
CNOT9-202ENST00000295701 RNF181Q9P0P0 153 aa12.6□□□□□ -0.39
CNOT9-202ENST00000295701 APLP1P51693 650 aa12.59□□□□□ -0.39
CNOT9-202ENST00000295701 PRELPP51888 382 aa12.59□□□□□ -0.39
CNOT9-202ENST00000295701 RASSF7Q02833 373 aa12.59□□□□□ -0.39
CNOT9-202ENST00000295701 MARVELD3Q96A59 401 aa12.59□□□□□ -0.39
CNOT9-202ENST00000295701 RRAGCQ9HB90 399 aa12.59□□□□□ -0.39
CNOT9-202ENST00000295701 NARFQ9UHQ1 456 aa12.59□□□□□ -0.39
CNOT9-202ENST00000295701 MRC1P22897 1456 aa12.59□□□□□ -0.39
CNOT9-202ENST00000295701 DIAPH1O60610 1272 aaKnown RBP12.58□□□□□ -0.4
CNOT9-202ENST00000295701 SERPINB2P05120 415 aa12.58□□□□□ -0.4
CNOT9-202ENST00000295701 CANXP27824 592 aaKnown RBP12.58□□□□□ -0.4
CNOT9-202ENST00000295701 CDAN1Q8IWY9 1227 aa12.58□□□□□ -0.4
CNOT9-202ENST00000295701 COL15A1P39059 1388 aa12.57□□□□□ -0.4
CNOT9-202ENST00000295701 NRXN2Q9P2S2 1712 aa12.57□□□□□ -0.4
CNOT9-202ENST00000295701 UBR2Q8IWV8 1755 aa12.57□□□□□ -0.4
CNOT9-202ENST00000295701 TMEM92Q6UXU6 159 aa12.57□□□□□ -0.4
CNOT9-202ENST00000295701 BICDL1Q6ZP65 573 aa12.57□□□□□ -0.4
CNOT9-202ENST00000295701 HOXB3P14651 431 aaPredicted RBP12.56□□□□□ -0.4
CNOT9-202ENST00000295701 CCDC24Q8N4L8 307 aa12.56□□□□□ -0.4
CNOT9-202ENST00000295701 IL17REQ8NFR9 667 aa12.56□□□□□ -0.4
CNOT9-202ENST00000295701 RBM46Q8TBY0 533 aaKnown RBP12.56□□□□□ -0.4
CNOT9-202ENST00000295701 WDR90Q96KV7 1748 aa12.56□□□□□ -0.4
CNOT9-202ENST00000295701 CARMIL3Q8ND23 1372 aa12.56□□□□□ -0.4
CNOT9-202ENST00000295701 C2CD5Q86YS7 1000 aa12.55□□□□□ -0.4
CNOT9-202ENST00000295701 C16orf71Q8IYS4 520 aaPredicted RBP12.55□□□□□ -0.4
CNOT9-202ENST00000295701 ZNF496Q96IT1 587 aaPredicted RBP12.55□□□□□ -0.4
CNOT9-202ENST00000295701 DLEC1Q9Y238 1755 aa12.55□□□□□ -0.4
CNOT9-202ENST00000295701 ANKRD31Q8N7Z5 1873 aa12.55□□□□□ -0.4
CNOT9-202ENST00000295701 U2SURPO15042 1029 aaKnown RBP12.54□□□□□ -0.4
CNOT9-202ENST00000295701 KCNQ3O43525 872 aa12.54□□□□□ -0.4
CNOT9-202ENST00000295701 EIF5P55010 431 aaKnown RBP12.54□□□□□ -0.4
CNOT9-202ENST00000295701 TBC1D9BQ66K14 1250 aa12.54□□□□□ -0.4
CNOT9-202ENST00000295701 VSIG10Q8N0Z9 540 aa12.54□□□□□ -0.4
CNOT9-202ENST00000295701 SIPA1L3O60292 1781 aaPredicted RBP12.53□□□□□ -0.4
CNOT9-202ENST00000295701 COL3A1P02461 1466 aaPredicted RBP12.53□□□□□ -0.4
CNOT9-202ENST00000295701 EMP3P54852 163 aa12.53□□□□□ -0.4
CNOT9-202ENST00000295701 DOK7Q18PE1 504 aa12.53□□□□□ -0.4
CNOT9-202ENST00000295701 TTLL6Q8N841 843 aa12.53□□□□□ -0.4
CNOT9-202ENST00000295701 TBC1D2BQ9UPU7 963 aa12.53□□□□□ -0.4
CNOT9-202ENST00000295701 ZNF330Q9Y3S2 320 aaPredicted RBP12.53□□□□□ -0.4
CNOT9-202ENST00000295701 KDM2BQ8NHM5 1336 aa12.53□□□□□ -0.4
CNOT9-202ENST00000295701 PCNTO95613 3336 aa12.53□□□□□ -0.4
CNOT9-202ENST00000295701 NFKBIEO00221 500 aa12.52□□□□□ -0.41
CNOT9-202ENST00000295701 STARD3NLO95772 234 aa12.52□□□□□ -0.41
CNOT9-202ENST00000295701 A1BGP04217 495 aa12.52□□□□□ -0.41
CNOT9-202ENST00000295701 ZNF790Q6PG37 636 aa12.52□□□□□ -0.41
CNOT9-202ENST00000295701 TTC5Q8N0Z6 440 aa12.52□□□□□ -0.41
CNOT9-202ENST00000295701 PHACTR3Q96KR7 559 aa12.52□□□□□ -0.41
CNOT9-202ENST00000295701 TNRC6CQ9HCJ0 1690 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms