RNA–Protein interactions for RNA: ENST00000289547.8

NPC1L1-201, Transcript of NPC1 like intracellular cholesterol transporter 1, humanhuman

TSL 1 (best) BASIC

Gene NPC1L1, Length 5,048 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1-201ENST00000289547 CAVIN4Q5BKX8 364 aa13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 SLC3A2P08195 630 aaKnown RBP13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 RRAGDQ9NQL2 400 aaPredicted RBP13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 PTPRCP08575 1304 aa13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 PRIM1P49642 420 aaKnown RBP13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 MCM2P49736 904 aa13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 RBM6P78332 1123 aaKnown RBP13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 TNPO1Q92973 898 aaKnown RBP13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 IFIT1P09914 478 aaKnown RBP13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 CCDC192P0DO97 292 aa13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 RNF20Q5VTR2 975 aa13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 TPTE2Q6XPS3 522 aa13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 DZIP3Q86Y13 1208 aaKnown RBP13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 SDF4Q9BRK5 362 aa13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 ERVV-2B6SEH9 535 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 IPO7O95373 1038 aaKnown RBP13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 ZSCAN25Q6NSZ9 544 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 RUFY1Q96T51 708 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 ERICH2A1L162 156 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 FAM83GA6ND36 823 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 ARHGEF25Q86VW2 580 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 DEF6Q9H4E7 631 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 BABAM1Q9NWV8 329 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 CALCOCO1Q9P1Z2 691 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 WDR17Q8IZU2 1322 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 TNS3Q68CZ2 1445 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 LRRIQ1Q96JM4 1722 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 HSPA1LP34931 641 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 AKAP17AQ02040 695 aaKnown RBP13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 NCOA3Q9Y6Q9 1424 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 INSRP06213 1382 aa13.43□□□□□ -0.26
NPC1L1-201ENST00000289547 METTL24Q5JXM2 366 aa13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 ANKRD13DQ6ZTN6 518 aa13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 SOS1Q07889 1333 aaPredicted RBP13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 KIF24Q5T7B8 1368 aa13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 PARD3Q8TEW0 1356 aa13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 HIP1O00291 1037 aa13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 SRGAP3O43295 1099 aa13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 NLRP3Q96P20 1036 aa13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 CCDC152Q4G0S7 254 aa13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 CNTROBQ8N137 903 aa13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 NAT10Q9H0A0 1025 aaKnown RBP13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 MBIPQ9NS73 344 aa13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 SETD1BQ9UPS6 1966 aaKnown RBP13.42□□□□□ -0.26
NPC1L1-201ENST00000289547 FLIIQ13045 1269 aa13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 SIL1Q9H173 461 aa13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 E9PCH4 1651 aa13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 IL13P35225 146 aa13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 CPLX2Q6PUV4 134 aaKnown RBP13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 CDC42BPGQ6DT37 1551 aa13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 FOSBP53539 338 aa13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 GCC1Q96CN9 775 aa13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 TSPYL1Q9H0U9 437 aa13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 NIP7Q9Y221 180 aaKnown RBP eCLIP13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 SEPT12Q8IYM1 358 aa13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 PDILTQ8N807 584 aa13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 PIK3C2BO00750 1634 aa13.41□□□□□ -0.26
NPC1L1-201ENST00000289547 SMC2O95347 1197 aa13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 CCDC85AQ96PX6 553 aaPredicted RBP13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 FSD1Q9BTV5 496 aa13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 PRR36Q9H6K5 1346 aa13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 SPATA31D1Q6ZQQ2 1576 aa13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 SSFA2P28290 1259 aa13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 DNAJC2Q99543 621 aaKnown RBP13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.4□□□□□ -0.264e-6■□□□□ 9.9
NPC1L1-201ENST00000289547 MAP3K2Q9Y2U5 619 aa13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 ERCC4Q92889 916 aaPredicted RBP13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 UTP14AQ9BVJ6 771 aaKnown RBP13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 ZNF219Q9P2Y4 722 aaPredicted RBP13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 LAMC1P11047 1609 aa13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 RPAP2Q8IXW5 612 aaPredicted RBP13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 REREQ9P2R6 1566 aa13.4□□□□□ -0.26
NPC1L1-201ENST00000289547 C6orf229H3BNL8 230 aa13.39□□□□□ -0.27
NPC1L1-201ENST00000289547 MCM5P33992 734 aa13.39□□□□□ -0.27
NPC1L1-201ENST00000289547 C1orf115Q9H7X2 142 aa13.39□□□□□ -0.27
NPC1L1-201ENST00000289547 SLC52A2Q9HAB3 445 aa13.39□□□□□ -0.27
NPC1L1-201ENST00000289547 AATKQ6ZMQ8 1374 aa13.39□□□□□ -0.27
NPC1L1-201ENST00000289547 WDR33Q9C0J8 1336 aaKnown RBP13.39□□□□□ -0.27
NPC1L1-201ENST00000289547 C1orf167Q5SNV9 1468 aa13.39□□□□□ -0.27
NPC1L1-201ENST00000289547 SLC5A1P13866 664 aa13.38□□□□□ -0.27
NPC1L1-201ENST00000289547 SLF2Q8IX21 1173 aa13.38□□□□□ -0.27
NPC1L1-201ENST00000289547 LRRCC1Q9C099 1032 aa13.38□□□□□ -0.27
NPC1L1-201ENST00000289547 DIP2AQ14689 1571 aa13.38□□□□□ -0.27
NPC1L1-201ENST00000289547 DHX16O60231 1041 aaKnown RBP13.38□□□□□ -0.27
NPC1L1-201ENST00000289547 WDHD1O75717 1129 aaPredicted RBP13.38□□□□□ -0.27
NPC1L1-201ENST00000289547 TULP4Q9NRJ4 1543 aa13.38□□□□□ -0.27
NPC1L1-201ENST00000289547 MVPQ14764 893 aaKnown RBP13.38□□□□□ -0.27
NPC1L1-201ENST00000289547 AXDND1Q5T1B0 1012 aaPredicted RBP13.38□□□□□ -0.27
NPC1L1-201ENST00000289547 FILIP1Q7Z7B0 1213 aa13.38□□□□□ -0.27
NPC1L1-201ENST00000289547 XAGE3Q8WTP9 111 aa13.38□□□□□ -0.27
NPC1L1-201ENST00000289547 CCDC87Q9NVE4 849 aa13.38□□□□□ -0.27
NPC1L1-201ENST00000289547 ZNF790Q6PG37 636 aa13.37□□□□□ -0.27
NPC1L1-201ENST00000289547 NACAP1Q9BZK3 213 aa13.37□□□□□ -0.27
NPC1L1-201ENST00000289547 MARCH6O60337 910 aa13.37□□□□□ -0.27
NPC1L1-201ENST00000289547 KINO60870 393 aaKnown RBP13.37□□□□□ -0.27
NPC1L1-201ENST00000289547 TTLL5Q6EMB2 1281 aa13.37□□□□□ -0.27
NPC1L1-201ENST00000289547 CCAR1Q8IX12 1150 aaKnown RBP13.37□□□□□ -0.27
NPC1L1-201ENST00000289547 PREX1Q8TCU6 1659 aa13.37□□□□□ -0.27
NPC1L1-201ENST00000289547 COPS6Q7L5N1 327 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms