RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 PIGBQ92521 554 aa11.78□□□□□ -0.52
TRIM55-201ENST00000276573 LAMB4A4D0S4 1761 aa11.78□□□□□ -0.52
TRIM55-201ENST00000276573 COL16A1Q07092 1604 aaPredicted RBP11.78□□□□□ -0.52
TRIM55-201ENST00000276573 PAPPAQ13219 1627 aa11.78□□□□□ -0.52
TRIM55-201ENST00000276573 SNX21Q969T3 373 aa11.78□□□□□ -0.52
TRIM55-201ENST00000276573 OS9Q13438 667 aaPredicted RBP11.77□□□□□ -0.53
TRIM55-201ENST00000276573 TTLL7Q6ZT98 887 aa11.77□□□□□ -0.53
TRIM55-201ENST00000276573 ERC1Q8IUD2 1116 aa11.77□□□□□ -0.53
TRIM55-201ENST00000276573 TEX13AQ9BXU3 409 aaPredicted RBP11.77□□□□□ -0.53
TRIM55-201ENST00000276573 ASAP1Q9ULH1 1129 aa11.77□□□□□ -0.53
TRIM55-201ENST00000276573 PA2G4Q9UQ80 394 aaKnown RBP11.77□□□□□ -0.53
TRIM55-201ENST00000276573 ATP5J2-PTCD1G3V325 749 aa11.76□□□□□ -0.53
TRIM55-201ENST00000276573 EPHA10Q5JZY3 1008 aa11.76□□□□□ -0.53
TRIM55-201ENST00000276573 VSIG10Q8N0Z9 540 aa11.76□□□□□ -0.53
TRIM55-201ENST00000276573 ATG3Q9NT62 314 aa11.76□□□□□ -0.53
TRIM55-201ENST00000276573 TOGARAM1Q9Y4F4 1720 aa11.76□□□□□ -0.53
TRIM55-201ENST00000276573 TRIM6-TRIM34B2RNG4 842 aa11.76□□□□□ -0.53
TRIM55-201ENST00000276573 ERC2O15083 957 aa11.76□□□□□ -0.53
TRIM55-201ENST00000276573 TOM1O60784 492 aa11.76□□□□□ -0.53
TRIM55-201ENST00000276573 ADAMTS2O95450 1211 aa11.76□□□□□ -0.53
TRIM55-201ENST00000276573 MYT1Q01538 1121 aa11.76□□□□□ -0.53
TRIM55-201ENST00000276573 PI4K2BQ8TCG2 481 aa11.76□□□□□ -0.53
TRIM55-201ENST00000276573 RILPL2Q969X0 211 aa11.76□□□□□ -0.53
TRIM55-201ENST00000276573 A0A087WZG4 1122 aa11.75□□□□□ -0.53
TRIM55-201ENST00000276573 REC8O95072 547 aa11.75□□□□□ -0.53
TRIM55-201ENST00000276573 CHMLP26374 656 aa11.75□□□□□ -0.53
TRIM55-201ENST00000276573 G3BP1Q13283 466 aaKnown RBP eCLIP11.75□□□□□ -0.53
TRIM55-201ENST00000276573 HSCBQ8IWL3 235 aa11.75□□□□□ -0.53
TRIM55-201ENST00000276573 CLASRPQ8N2M8 674 aaKnown RBP11.75□□□□□ -0.53
TRIM55-201ENST00000276573 JARID2Q92833 1246 aaPredicted RBP11.75□□□□□ -0.53
TRIM55-201ENST00000276573 ANTXR1Q9H6X2 564 aa11.75□□□□□ -0.53
TRIM55-201ENST00000276573 PHLPP1O60346 1717 aa11.75□□□□□ -0.53
TRIM55-201ENST00000276573 USP42Q9H9J4 1324 aaKnown RBP11.75□□□□□ -0.53
TRIM55-201ENST00000276573 COL15A1P39059 1388 aa11.74□□□□□ -0.53
TRIM55-201ENST00000276573 H7C1W4 665 aa11.74□□□□□ -0.53
TRIM55-201ENST00000276573 SASH1O94885 1247 aa11.74□□□□□ -0.53
TRIM55-201ENST00000276573 CASP7P55210 303 aa11.74□□□□□ -0.53
TRIM55-201ENST00000276573 UNC5CLQ8IV45 518 aa11.74□□□□□ -0.53
TRIM55-201ENST00000276573 CDCA7Q9BWT1 371 aaPredicted RBP11.74□□□□□ -0.53
TRIM55-201ENST00000276573 PIP4K2BP78356 416 aa11.74□□□□□ -0.53
TRIM55-201ENST00000276573 NFKBIBQ15653 356 aa11.74□□□□□ -0.53
TRIM55-201ENST00000276573 UBE3BQ7Z3V4 1068 aa11.74□□□□□ -0.53
TRIM55-201ENST00000276573 DNAJC10Q8IXB1 793 aa11.74□□□□□ -0.53
TRIM55-201ENST00000276573 ESYT1Q9BSJ8 1104 aa11.74□□□□□ -0.53
TRIM55-201ENST00000276573 THRAP3Q9Y2W1 955 aaKnown RBP11.74□□□□□ -0.53
TRIM55-201ENST00000276573 SPATA31A1Q5TZJ5 1347 aa11.73□□□□□ -0.53
TRIM55-201ENST00000276573 TTC41PQ6P2S7 1318 aa11.73□□□□□ -0.53
TRIM55-201ENST00000276573 ARFGEF2Q9Y6D5 1785 aa11.73□□□□□ -0.53
TRIM55-201ENST00000276573 TUBGCP6Q96RT7 1819 aa11.73□□□□□ -0.53
TRIM55-201ENST00000276573 NUTM2BA6NNL0 878 aaPredicted RBP11.73□□□□□ -0.53
TRIM55-201ENST00000276573 NUTM2EB1AL46 878 aaPredicted RBP11.73□□□□□ -0.53
TRIM55-201ENST00000276573 RABL6Q3YEC7 729 aaPredicted RBP11.73□□□□□ -0.53
TRIM55-201ENST00000276573 RTL5Q5HYW3 569 aaPredicted RBP11.73□□□□□ -0.53
TRIM55-201ENST00000276573 NUTM2AQ8IVF1 878 aaPredicted RBP11.73□□□□□ -0.53
TRIM55-201ENST00000276573 RBM42Q9BTD8 480 aaKnown RBP11.73□□□□□ -0.53
TRIM55-201ENST00000276573 SLKQ9H2G2 1235 aaPredicted RBP11.73□□□□□ -0.53
TRIM55-201ENST00000276573 BCL9O00512 1426 aa11.73□□□□□ -0.53
TRIM55-201ENST00000276573 STARD3NLO95772 234 aa11.72□□□□□ -0.53
TRIM55-201ENST00000276573 IFIT2P09913 472 aaKnown RBP11.72□□□□□ -0.53
TRIM55-201ENST00000276573 RFX5P48382 616 aaPredicted RBP11.72□□□□□ -0.53
TRIM55-201ENST00000276573 COPRSQ9NQ92 184 aa11.72□□□□□ -0.53
TRIM55-201ENST00000276573 CWC25Q9NXE8 425 aaPredicted RBP11.72□□□□□ -0.53
TRIM55-201ENST00000276573 PLCH1Q4KWH8 1693 aa11.72□□□□□ -0.53
TRIM55-201ENST00000276573 GLRX3O76003 335 aaKnown RBP11.72□□□□□ -0.53
TRIM55-201ENST00000276573 SPRYD3Q8NCJ5 442 aa11.72□□□□□ -0.53
TRIM55-201ENST00000276573 CCDC191Q8NCU4 936 aa11.72□□□□□ -0.53
TRIM55-201ENST00000276573 ZBTB3Q9H5J0 574 aa11.72□□□□□ -0.53
TRIM55-201ENST00000276573 ECHDC1Q9NTX5 307 aa11.72□□□□□ -0.53
TRIM55-201ENST00000276573 ITGB4P16144 1822 aa11.71□□□□□ -0.53
TRIM55-201ENST00000276573 AFDNP55196 1824 aaKnown RBP11.71□□□□□ -0.53
TRIM55-201ENST00000276573 MAP4K4O95819 1239 aaPredicted RBP11.71□□□□□ -0.53
TRIM55-201ENST00000276573 PRIM1P49642 420 aaKnown RBP11.71□□□□□ -0.53
TRIM55-201ENST00000276573 FOXO4P98177 505 aa11.71□□□□□ -0.53
TRIM55-201ENST00000276573 RABEP1Q15276 862 aa11.71□□□□□ -0.53
TRIM55-201ENST00000276573 KLHDC4Q8TBB5 520 aa11.71□□□□□ -0.53
TRIM55-201ENST00000276573 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.71□□□□□ -0.53
TRIM55-201ENST00000276573 PTPN12Q05209 780 aaKnown RBP11.7□□□□□ -0.54
TRIM55-201ENST00000276573 TCIRG1Q13488 830 aa11.7□□□□□ -0.54
TRIM55-201ENST00000276573 DDB1Q16531 1140 aa11.7□□□□□ -0.54
TRIM55-201ENST00000276573 AACSQ86V21 672 aa11.7□□□□□ -0.54
TRIM55-201ENST00000276573 CNTROBQ8N137 903 aa11.7□□□□□ -0.54
TRIM55-201ENST00000276573 EAF2Q96CJ1 260 aaPredicted RBP11.7□□□□□ -0.54
TRIM55-201ENST00000276573 GPATCH3Q96I76 525 aa11.7□□□□□ -0.54
TRIM55-201ENST00000276573 SLC4A9Q96Q91 983 aa11.7□□□□□ -0.54
TRIM55-201ENST00000276573 ISCA1Q9BUE6 129 aa11.7□□□□□ -0.54
TRIM55-201ENST00000276573 SIL1Q9H173 461 aa11.7□□□□□ -0.54
TRIM55-201ENST00000276573 LRP6O75581 1613 aa11.7□□□□□ -0.54
TRIM55-201ENST00000276573 CD2BP2O95400 341 aaKnown RBP11.7□□□□□ -0.54
TRIM55-201ENST00000276573 CYP19A1P11511 503 aaPredicted RBP11.7□□□□□ -0.54
TRIM55-201ENST00000276573 TRIM28Q13263 835 aaKnown RBP11.7□□□□□ -0.54
TRIM55-201ENST00000276573 LMBR1LQ6UX01 489 aa11.7□□□□□ -0.54
TRIM55-201ENST00000276573 SYTL4Q96C24 671 aaPredicted RBP11.7□□□□□ -0.54
TRIM55-201ENST00000276573 SPATA31A5Q5VU36 1347 aa11.7□□□□□ -0.54
TRIM55-201ENST00000276573 SPATA31A7Q8IWB4 1347 aa11.7□□□□□ -0.54
TRIM55-201ENST00000276573 CCDC8Q9H0W5 538 aaPredicted RBP11.69□□□□□ -0.54
TRIM55-201ENST00000276573 NUP188Q5SRE5 1749 aa11.69□□□□□ -0.54
TRIM55-201ENST00000276573 NRAPQ86VF7 1730 aa11.69□□□□□ -0.54
TRIM55-201ENST00000276573 K7ELQ4 463 aaPredicted RBP11.68□□□□□ -0.54
TRIM55-201ENST00000276573 EPB41L2O43491 1005 aaKnown RBP11.68□□□□□ -0.54
TRIM55-201ENST00000276573 BARGINQ6ZT62 677 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms