RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 TNPO1Q92973 898 aaKnown RBP9.22□□□□□ -0.93
USP3-201ENST00000268049 PLEKHG3A1L390 1219 aa9.22□□□□□ -0.93
USP3-201ENST00000268049 ANKRD18AQ8IVF6 992 aa9.22□□□□□ -0.93
USP3-201ENST00000268049 TMPOP42166 694 aaKnown RBP9.21□□□□□ -0.93
USP3-201ENST00000268049 MCM10Q7L590 875 aa9.21□□□□□ -0.93
USP3-201ENST00000268049 GPHNQ9NQX3 736 aaPredicted RBP9.21□□□□□ -0.93
USP3-201ENST00000268049 ATP6V1DQ9Y5K8 247 aa9.21□□□□□ -0.93
USP3-201ENST00000268049 KDM5CP41229 1560 aa9.21□□□□□ -0.93
USP3-201ENST00000268049 ARHGEF40Q8TER5 1519 aa9.21□□□□□ -0.93
USP3-201ENST00000268049 COL17A1Q9UMD9 1497 aaPredicted RBP9.21□□□□□ -0.93
USP3-201ENST00000268049 PDE3AQ14432 1141 aa9.21□□□□□ -0.93
USP3-201ENST00000268049 WDR70Q9NW82 654 aa9.21□□□□□ -0.93
USP3-201ENST00000268049 DIP2CQ9Y2E4 1556 aa9.21□□□□□ -0.93
USP3-201ENST00000268049 FLT4P35916 1363 aa9.21□□□□□ -0.94
USP3-201ENST00000268049 IP6K1Q92551 441 aa9.21□□□□□ -0.94
USP3-201ENST00000268049 RUFY1Q96T51 708 aa9.21□□□□□ -0.94
USP3-201ENST00000268049 FSD1Q9BTV5 496 aa9.21□□□□□ -0.94
USP3-201ENST00000268049 TMEM106CQ9BVX2 250 aa9.21□□□□□ -0.94
USP3-201ENST00000268049 DDX19BQ9UMR2 479 aa9.21□□□□□ -0.94
USP3-201ENST00000268049 PTPRTO14522 1441 aa9.21□□□□□ -0.94
USP3-201ENST00000268049 PLEKHH1Q9ULM0 1364 aa9.21□□□□□ -0.94
USP3-201ENST00000268049 EXOSC9Q06265 439 aaKnown RBP9.21□□□□□ -0.94
USP3-201ENST00000268049 DZIP1LQ8IYY4 767 aaKnown RBP9.21□□□□□ -0.94
USP3-201ENST00000268049 ZNF526Q8TF50 670 aaPredicted RBP9.21□□□□□ -0.94
USP3-201ENST00000268049 CNKSR1Q969H4 720 aa9.21□□□□□ -0.94
USP3-201ENST00000268049 TESK2Q96S53 571 aa9.21□□□□□ -0.94
USP3-201ENST00000268049 MKNK2Q9HBH9 465 aa9.21□□□□□ -0.94
USP3-201ENST00000268049 ANO2Q9NQ90 1003 aa9.21□□□□□ -0.94
USP3-201ENST00000268049 MAST3O60307 1309 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 TDO2P48775 406 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 CDR1P51861 262 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 CCDC125Q86Z20 511 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 ANKRD2Q9GZV1 360 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 PRDM10Q9NQV6 1147 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 SEC63Q9UGP8 760 aaKnown RBP9.2□□□□□ -0.94
USP3-201ENST00000268049 SLC4A2P04920 1241 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 NCBP1Q09161 790 aaKnown RBP9.2□□□□□ -0.94
USP3-201ENST00000268049 FERMT2Q96AC1 680 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 KDM2BQ8NHM5 1336 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 PIK3C2GO75747 1445 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 SULF1Q8IWU6 871 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 NLGN1Q8N2Q7 840 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 AGLP35573 1532 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 A0A1W2PP64 1363 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 PDIA4P13667 645 aaKnown RBP9.2□□□□□ -0.94
USP3-201ENST00000268049 APBB1IPQ7Z5R6 666 aaPredicted RBP9.2□□□□□ -0.94
USP3-201ENST00000268049 WDR63Q8IWG1 891 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 PLCD4Q9BRC7 762 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 ABCF2Q9UG63 623 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 CSADQ9Y600 493 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 TET3O43151 1660 aa9.2□□□□□ -0.94
USP3-201ENST00000268049 ESPNB1AK53 854 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 CCT4P50991 539 aaKnown RBP9.19□□□□□ -0.94
USP3-201ENST00000268049 CCDC96Q2M329 555 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 ZNF444Q8N0Y2 327 aaPredicted RBP9.19□□□□□ -0.94
USP3-201ENST00000268049 TNFAIP1Q13829 316 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 DCTN1Q14203 1278 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 CNTROBQ8N137 903 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 TSR2Q969E8 191 aaKnown RBP9.19□□□□□ -0.94
USP3-201ENST00000268049 UTP14AQ9BVJ6 771 aaKnown RBP9.19□□□□□ -0.94
USP3-201ENST00000268049 LRRCC1Q9C099 1032 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 KIF4AO95239 1232 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 SYCP1Q15431 976 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 CCDC174Q6PII3 467 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 ELMSAN1Q6PJG2 1045 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 LRSAM1Q6UWE0 723 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 GPBP1L1Q9HC44 474 aaPredicted RBP9.19□□□□□ -0.94
USP3-201ENST00000268049 CGNQ9P2M7 1197 aaKnown RBP9.19□□□□□ -0.94
USP3-201ENST00000268049 KDM4FA0A1W2PPD8 638 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 TRAK2O60296 914 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 PCMTD1Q96MG8 357 aaPredicted RBP9.19□□□□□ -0.94
USP3-201ENST00000268049 HYPKQ9NX55 129 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 MIS18AQ9NYP9 233 aa9.19□□□□□ -0.94
USP3-201ENST00000268049 ZHX1Q9UKY1 873 aaPredicted RBP9.19□□□□□ -0.94
USP3-201ENST00000268049 HOXC9P31274 260 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 ROBO2Q9HCK4 1378 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 SNRPA1P09661 255 aaKnown RBP9.18□□□□□ -0.94
USP3-201ENST00000268049 PLCG2P16885 1265 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 PSMA5P28066 241 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 UBAC1Q9BSL1 405 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 MAP3K12Q12852 859 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 ERCC4Q92889 916 aaPredicted RBP9.18□□□□□ -0.94
USP3-201ENST00000268049 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.18□□□□□ -0.942e-6■■■□□ 18.4
USP3-201ENST00000268049 POLKQ9UBT6 870 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 COG6Q9Y2V7 657 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 EDC4Q6P2E9 1401 aaKnown RBP9.18□□□□□ -0.94
USP3-201ENST00000268049 ERICH4A6NGS2 130 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 PLCD3Q8N3E9 789 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 GIMAP7Q8NHV1 300 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 CTNNA3Q9UI47 895 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 WWC3Q9ULE0 1092 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 MAP3K19Q56UN5 1328 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 REC8O95072 547 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 IRX3P78415 501 aaPredicted RBP9.18□□□□□ -0.94
USP3-201ENST00000268049 MCTP1Q6DN14 999 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 TRIM22Q8IYM9 498 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 NBPF3Q9H094 633 aa9.18□□□□□ -0.94
USP3-201ENST00000268049 NIP7Q9Y221 180 aaKnown RBP eCLIP9.18□□□□□ -0.94
USP3-201ENST00000268049 CCDC69A6NI79 296 aa9.17□□□□□ -0.94
USP3-201ENST00000268049 IPO7O95373 1038 aaKnown RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms