RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 BBXQ8WY36 941 aaPredicted RBP12.13□□□□□ -0.47
LIG3-201ENST00000262327 TSPY26PQ9H489 355 aa12.13□□□□□ -0.47
LIG3-201ENST00000262327 ROBO1Q9Y6N7 1651 aa12.13□□□□□ -0.47
LIG3-201ENST00000262327 SRCIN1Q9C0H9 1055 aa12.13□□□□□ -0.47
LIG3-201ENST00000262327 CHPF2Q9P2E5 772 aa12.13□□□□□ -0.47
LIG3-201ENST00000262327 PI4KAP2A4QPH2 592 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 FIBPO43427 364 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 MBD3O95983 291 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 PI4KAP1Q8N8J0 262 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 TPM2P07951 284 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 MCM2P49736 904 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 AK2P54819 239 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 ZC3H6P61129 1189 aaKnown RBP12.12□□□□□ -0.47
LIG3-201ENST00000262327 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.12□□□□□ -0.47
LIG3-201ENST00000262327 ANKRD24Q8TF21 1146 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 STAP2Q9UGK3 403 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 ZKSCAN5Q9Y2L8 839 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 COL18A1P39060 1754 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 CAMTA1Q9Y6Y1 1673 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 LARGE1O95461 756 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 JARID2Q92833 1246 aaPredicted RBP12.12□□□□□ -0.47
LIG3-201ENST00000262327 PA2G4Q9UQ80 394 aaKnown RBP12.12□□□□□ -0.47
LIG3-201ENST00000262327 SNX14Q9Y5W7 946 aa12.12□□□□□ -0.47
LIG3-201ENST00000262327 HSPA4P34932 840 aa12.11□□□□□ -0.47
LIG3-201ENST00000262327 C17orf53Q8N3J3 647 aaPredicted RBP12.11□□□□□ -0.47
LIG3-201ENST00000262327 PI4K2BQ8TCG2 481 aa12.11□□□□□ -0.47
LIG3-201ENST00000262327 LRRC59Q96AG4 307 aaKnown RBP12.11□□□□□ -0.47
LIG3-201ENST00000262327 USP25Q9UHP3 1055 aa12.11□□□□□ -0.47
LIG3-201ENST00000262327 HTATSF1O43719 755 aaKnown RBP12.11□□□□□ -0.47
LIG3-201ENST00000262327 TOM1O60784 492 aa12.11□□□□□ -0.47
LIG3-201ENST00000262327 NBPF6Q5VWK0 638 aa12.11□□□□□ -0.47
LIG3-201ENST00000262327 CABLES1Q8TDN4 633 aa12.11□□□□□ -0.47
LIG3-201ENST00000262327 SSH3Q8TE77 659 aa12.11□□□□□ -0.47
LIG3-201ENST00000262327 NBPF4Q96M43 638 aa12.11□□□□□ -0.47
LIG3-201ENST00000262327 CHMP3Q9Y3E7 222 aa12.11□□□□□ -0.47
LIG3-201ENST00000262327 ANAPC15P60006 121 aa12.1□□□□□ -0.47
LIG3-201ENST00000262327 AXIN2Q9Y2T1 843 aa12.1□□□□□ -0.47
LIG3-201ENST00000262327 UQCRHLA0A096LP55 91 aa12.1□□□□□ -0.47
LIG3-201ENST00000262327 UQCRHP07919 91 aa12.1□□□□□ -0.47
LIG3-201ENST00000262327 CASTP20810 708 aaKnown RBP12.1□□□□□ -0.47
LIG3-201ENST00000262327 COL9A3Q14050 684 aaPredicted RBP12.1□□□□□ -0.47
LIG3-201ENST00000262327 RUFY3Q7L099 469 aa12.1□□□□□ -0.47
LIG3-201ENST00000262327 CCDC83Q8IWF9 413 aa12.1□□□□□ -0.47
LIG3-201ENST00000262327 INTS4Q96HW7 963 aaKnown RBP12.1□□□□□ -0.47
LIG3-201ENST00000262327 PLEKHG2Q9H7P9 1386 aa12.1□□□□□ -0.47
LIG3-201ENST00000262327 SGSM2O43147 1006 aa12.09□□□□□ -0.47
LIG3-201ENST00000262327 HCLS1P14317 486 aaPredicted RBP12.09□□□□□ -0.47
LIG3-201ENST00000262327 MPRIPQ6WCQ1 1025 aa12.09□□□□□ -0.47
LIG3-201ENST00000262327 ERBB3P21860 1342 aa12.09□□□□□ -0.47
LIG3-201ENST00000262327 ABCA3Q99758 1704 aa12.09□□□□□ -0.47
LIG3-201ENST00000262327 LMO7Q8WWI1 1683 aa12.09□□□□□ -0.47
LIG3-201ENST00000262327 PTH1RQ03431 593 aa12.09□□□□□ -0.47
LIG3-201ENST00000262327 ADCK5Q3MIX3 580 aa12.09□□□□□ -0.47
LIG3-201ENST00000262327 NAP1L2Q9ULW6 460 aaPredicted RBP12.09□□□□□ -0.47
LIG3-201ENST00000262327 WDR33Q9C0J8 1336 aaKnown RBP12.09□□□□□ -0.47
LIG3-201ENST00000262327 FAM208AQ9UK61 1670 aaKnown RBP12.09□□□□□ -0.47
LIG3-201ENST00000262327 MAP3K5Q99683 1374 aa12.09□□□□□ -0.47
LIG3-201ENST00000262327 RPAP1Q9BWH6 1393 aaPredicted RBP12.09□□□□□ -0.47
LIG3-201ENST00000262327 SYT1P21579 422 aa12.09□□□□□ -0.47
LIG3-201ENST00000262327 TCEANC2Q96MN5 208 aa12.09□□□□□ -0.47
LIG3-201ENST00000262327 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.09□□□□□ -0.47
LIG3-201ENST00000262327 TCHHQ07283 1943 aa12.09□□□□□ -0.47
LIG3-201ENST00000262327 PRAMEF22A3QJZ6 481 aa12.08□□□□□ -0.48
LIG3-201ENST00000262327 DNTTIP2Q5QJE6 756 aaKnown RBP12.08□□□□□ -0.48
LIG3-201ENST00000262327 PRPF40BQ6NWY9 871 aaKnown RBP12.08□□□□□ -0.48
LIG3-201ENST00000262327 NECAB1Q8N987 351 aa12.08□□□□□ -0.48
LIG3-201ENST00000262327 TSC1Q92574 1164 aa12.08□□□□□ -0.48
LIG3-201ENST00000262327 LSG1Q9H089 658 aaKnown RBP12.08□□□□□ -0.48
LIG3-201ENST00000262327 CCDC39Q9UFE4 941 aa12.08□□□□□ -0.48
LIG3-201ENST00000262327 COL22A1Q8NFW1 1626 aaPredicted RBP12.08□□□□□ -0.48
LIG3-201ENST00000262327 ZNF500O60304 480 aaPredicted RBP12.08□□□□□ -0.48
LIG3-201ENST00000262327 GIMAP6Q6P9H5 292 aa12.08□□□□□ -0.48
LIG3-201ENST00000262327 TTC12Q9H892 705 aaPredicted RBP12.08□□□□□ -0.48
LIG3-201ENST00000262327 SMC3Q9UQE7 1217 aa12.08□□□□□ -0.48
LIG3-201ENST00000262327 GTF2E1P29083 439 aaPredicted RBP12.07□□□□□ -0.48
LIG3-201ENST00000262327 CWF19L2Q2TBE0 894 aaKnown RBP12.07□□□□□ -0.48
LIG3-201ENST00000262327 CNTROBQ8N137 903 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 DNAAF4Q8WXU2 420 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 SYAP1Q96A49 352 aaPredicted RBP12.07□□□□□ -0.48
LIG3-201ENST00000262327 KIF1BPQ96EK5 621 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 JAKMIP1Q96N16 626 aaKnown RBP12.07□□□□□ -0.48
LIG3-201ENST00000262327 RAD50Q92878 1312 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 VPS37CA5D8V6 355 aaPredicted RBP12.07□□□□□ -0.48
LIG3-201ENST00000262327 PROSER3Q2NL68 480 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 HS1BP3Q53T59 392 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 TAF7LQ5H9L4 462 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 FAM173BQ6P4H8 233 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 DIAPH3Q9NSV4 1193 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.07□□□□□ -0.48
LIG3-201ENST00000262327 FAM177BA6PVY3 158 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 STX6O43752 255 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 ZSCAN22P10073 491 aaPredicted RBP12.07□□□□□ -0.48
LIG3-201ENST00000262327 DNM1Q05193 864 aaKnown RBP12.07□□□□□ -0.48
LIG3-201ENST00000262327 AMOTQ4VCS5 1084 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 FERMT3Q86UX7 667 aa12.07□□□□□ -0.48
LIG3-201ENST00000262327 RGPD5Q99666 1765 aa12.06□□□□□ -0.48
LIG3-201ENST00000262327 EIF4A1P60842 406 aaKnown RBP12.06□□□□□ -0.48
LIG3-201ENST00000262327 AIMP1Q12904 312 aaKnown RBP12.06□□□□□ -0.48
LIG3-201ENST00000262327 POLA2Q14181 598 aa12.06□□□□□ -0.48
LIG3-201ENST00000262327 BEND3Q5T5X7 828 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms