RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 B4GALNT3Q6L9W6 998 aa7.66□□□□□ -1.18
TOPBP1-201ENST00000260810 KNSTRNQ9Y448 316 aa7.66□□□□□ -1.18
TOPBP1-201ENST00000260810 SOX12O15370 315 aa7.65□□□□□ -1.18
TOPBP1-201ENST00000260810 MORC1Q86VD1 984 aa7.65□□□□□ -1.18
TOPBP1-201ENST00000260810 CARD10Q9BWT7 1032 aa7.65□□□□□ -1.18
TOPBP1-201ENST00000260810 EID1Q9Y6B2 187 aa7.65□□□□□ -1.18
TOPBP1-201ENST00000260810 ABCC12Q96J65 1359 aa7.65□□□□□ -1.18
TOPBP1-201ENST00000260810 DIAPH1O60610 1272 aaKnown RBP7.65□□□□□ -1.18
TOPBP1-201ENST00000260810 LINC00116Q8NCU8 138 aa7.65□□□□□ -1.18
TOPBP1-201ENST00000260810 SHISA4Q96DD7 197 aa7.65□□□□□ -1.18
TOPBP1-201ENST00000260810 FOXO4P98177 505 aa7.65□□□□□ -1.19
TOPBP1-201ENST00000260810 MEIS3Q99687 375 aa7.65□□□□□ -1.19
TOPBP1-201ENST00000260810 BTG4Q9NY30 223 aa7.65□□□□□ -1.19
TOPBP1-201ENST00000260810 SNAP23O00161 211 aa7.65□□□□□ -1.19
TOPBP1-201ENST00000260810 TTLL7Q6ZT98 887 aa7.64□□□□□ -1.19
TOPBP1-201ENST00000260810 NBEAQ8NFP9 2946 aa7.64□□□□□ -1.19
TOPBP1-201ENST00000260810 RIPK4P57078 832 aa7.64□□□□□ -1.19
TOPBP1-201ENST00000260810 ZNF827Q17R98 1081 aa7.64□□□□□ -1.19
TOPBP1-201ENST00000260810 CADPS2Q86UW7 1296 aa7.64□□□□□ -1.19
TOPBP1-201ENST00000260810 ANP32CO43423 234 aa7.63□□□□□ -1.19
TOPBP1-201ENST00000260810 KCNA3P22001 575 aa7.63□□□□□ -1.19
TOPBP1-201ENST00000260810 INTS3Q68E01 1043 aaKnown RBP7.63□□□□□ -1.19
TOPBP1-201ENST00000260810 SOS1Q07889 1333 aaPredicted RBP7.63□□□□□ -1.19
TOPBP1-201ENST00000260810 SASH1O94885 1247 aa7.62□□□□□ -1.19
TOPBP1-201ENST00000260810 NOB1Q9ULX3 412 aaKnown RBP7.62□□□□□ -1.19
TOPBP1-201ENST00000260810 LRRC37A2A6NM11 1700 aa7.62□□□□□ -1.19
TOPBP1-201ENST00000260810 SLC52A2Q9HAB3 445 aa7.62□□□□□ -1.19
TOPBP1-201ENST00000260810 CYP19A1P11511 503 aaPredicted RBP7.62□□□□□ -1.19
TOPBP1-201ENST00000260810 POLA2Q14181 598 aa7.62□□□□□ -1.19
TOPBP1-201ENST00000260810 MAST2Q6P0Q8 1798 aa7.61□□□□□ -1.19
TOPBP1-201ENST00000260810 TLR7Q9NYK1 1049 aaKnown RBP7.61□□□□□ -1.19
TOPBP1-201ENST00000260810 ZSWIM8A7E2V4 1837 aa7.61□□□□□ -1.19
TOPBP1-201ENST00000260810 ATAD5Q96QE3 1844 aa7.61□□□□□ -1.19
TOPBP1-201ENST00000260810 ATG9AQ7Z3C6 839 aa7.61□□□□□ -1.19
TOPBP1-201ENST00000260810 DENND2AQ9ULE3 1009 aa7.61□□□□□ -1.19
TOPBP1-201ENST00000260810 KALRNO60229 2985 aa7.61□□□□□ -1.19
TOPBP1-201ENST00000260810 NBPF3Q9H094 633 aa7.6□□□□□ -1.19
TOPBP1-201ENST00000260810 SMC5Q8IY18 1101 aa7.6□□□□□ -1.19
TOPBP1-201ENST00000260810 KLHDC4Q8TBB5 520 aa7.6□□□□□ -1.19
TOPBP1-201ENST00000260810 TERF2IPQ9NYB0 399 aa7.6□□□□□ -1.19
TOPBP1-201ENST00000260810 A1BGP04217 495 aa7.6□□□□□ -1.19
TOPBP1-201ENST00000260810 RPAP1Q9BWH6 1393 aaPredicted RBP7.6□□□□□ -1.19
TOPBP1-201ENST00000260810 NAV1Q8NEY1 1877 aa7.6□□□□□ -1.19
TOPBP1-201ENST00000260810 ZNF790Q6PG37 636 aa7.6□□□□□ -1.19
TOPBP1-201ENST00000260810 BARGINQ6ZT62 677 aa7.6□□□□□ -1.19
TOPBP1-201ENST00000260810 PLXNB2O15031 1838 aa7.6□□□□□ -1.19
TOPBP1-201ENST00000260810 ELL2O00472 640 aaPredicted RBP7.59□□□□□ -1.19
TOPBP1-201ENST00000260810 C1orf115Q9H7X2 142 aa7.59□□□□□ -1.19
TOPBP1-201ENST00000260810 U2AF1L5P0DN76 240 aaPredicted RBP7.59□□□□□ -1.19
TOPBP1-201ENST00000260810 U2AF1Q01081 240 aaKnown RBP eCLIP7.59□□□□□ -1.19
TOPBP1-201ENST00000260810 IL17RAQ96F46 866 aa7.59□□□□□ -1.19
TOPBP1-201ENST00000260810 IFT57Q9NWB7 429 aa7.59□□□□□ -1.19
TOPBP1-201ENST00000260810 COL11A1P12107 1806 aaPredicted RBP7.59□□□□□ -1.19
TOPBP1-201ENST00000260810 DTNBO60941 627 aa7.59□□□□□ -1.19
TOPBP1-201ENST00000260810 GRIK5Q16478 980 aa7.59□□□□□ -1.19
TOPBP1-201ENST00000260810 POLR3GLQ9BT43 218 aa7.59□□□□□ -1.19
TOPBP1-201ENST00000260810 CHPF2Q9P2E5 772 aa7.59□□□□□ -1.19
TOPBP1-201ENST00000260810 CWF19L2Q2TBE0 894 aaKnown RBP7.59□□□□□ -1.2
TOPBP1-201ENST00000260810 PI4K2BQ8TCG2 481 aa7.59□□□□□ -1.2
TOPBP1-201ENST00000260810 NEUROD2Q15784 382 aa7.58□□□□□ -1.2
TOPBP1-201ENST00000260810 RCAN3Q9UKA8 241 aa7.58□□□□□ -1.2
TOPBP1-201ENST00000260810 COG3Q96JB2 828 aa7.58□□□□□ -1.2
TOPBP1-201ENST00000260810 ADAMTS3O15072 1205 aa7.58□□□□□ -1.2
TOPBP1-201ENST00000260810 JARID2Q92833 1246 aaPredicted RBP7.58□□□□□ -1.2
TOPBP1-201ENST00000260810 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.58□□□□□ -1.21e-6■■■□□ 18.9
TOPBP1-201ENST00000260810 PAK3O75914 559 aaPredicted RBP7.58□□□□□ -1.2
TOPBP1-201ENST00000260810 COL12A1Q99715 3063 aa7.57□□□□□ -1.2
TOPBP1-201ENST00000260810 RABL6Q3YEC7 729 aaPredicted RBP7.57□□□□□ -1.2
TOPBP1-201ENST00000260810 AKT1S1Q96B36 256 aa7.57□□□□□ -1.2
TOPBP1-201ENST00000260810 EIF5P55010 431 aaKnown RBP7.57□□□□□ -1.2
TOPBP1-201ENST00000260810 KLRK1P26718 216 aa7.57□□□□□ -1.2
TOPBP1-201ENST00000260810 SCARF1Q14162 830 aa7.57□□□□□ -1.2
TOPBP1-201ENST00000260810 VPS72Q15906 364 aa7.57□□□□□ -1.2
TOPBP1-201ENST00000260810 SLURP2P0DP57 97 aa7.56□□□□□ -1.2
TOPBP1-201ENST00000260810 CEP85Q6P2H3 762 aa7.56□□□□□ -1.2
TOPBP1-201ENST00000260810 OLFM4Q6UX06 510 aa7.56□□□□□ -1.2
TOPBP1-201ENST00000260810 GOLGA2Q08379 1002 aa7.56□□□□□ -1.2
TOPBP1-201ENST00000260810 TSHZ3Q63HK5 1081 aa7.56□□□□□ -1.2
TOPBP1-201ENST00000260810 COG6Q9Y2V7 657 aa7.56□□□□□ -1.2
TOPBP1-201ENST00000260810 AKAP4Q5JQC9 854 aa7.56□□□□□ -1.2
TOPBP1-201ENST00000260810 ANTXR1Q9H6X2 564 aa7.56□□□□□ -1.2
TOPBP1-201ENST00000260810 ZBTB1Q9Y2K1 713 aa7.56□□□□□ -1.2
TOPBP1-201ENST00000260810 CAMTA2O94983 1202 aa7.55□□□□□ -1.2
TOPBP1-201ENST00000260810 MTX1Q13505 466 aa7.55□□□□□ -1.2
TOPBP1-201ENST00000260810 TXNRD3Q86VQ6 643 aa7.55□□□□□ -1.2
TOPBP1-201ENST00000260810 CHAMP1Q96JM3 812 aa7.54□□□□□ -1.2
TOPBP1-201ENST00000260810 DDR1Q08345 913 aa7.54□□□□□ -1.2
TOPBP1-201ENST00000260810 LTV1Q96GA3 475 aaPredicted RBP7.54□□□□□ -1.2
TOPBP1-201ENST00000260810 DMXL2Q8TDJ6 3036 aa7.54□□□□□ -1.2
TOPBP1-201ENST00000260810 FKBP8Q14318 412 aa7.54□□□□□ -1.2
TOPBP1-201ENST00000260810 NDUFB9Q9Y6M9 179 aa7.54□□□□□ -1.2
TOPBP1-201ENST00000260810 NGDNQ8NEJ9 315 aaKnown RBP7.54□□□□□ -1.2
TOPBP1-201ENST00000260810 ISCA1Q9BUE6 129 aa7.54□□□□□ -1.2
TOPBP1-201ENST00000260810 DOCK5Q9H7D0 1870 aa7.54□□□□□ -1.2
TOPBP1-201ENST00000260810 POTEEQ6S8J3 1075 aa7.53□□□□□ -1.2
TOPBP1-201ENST00000260810 CAMKK2Q96RR4 588 aa7.53□□□□□ -1.2
TOPBP1-201ENST00000260810 PSME1Q06323 249 aa7.53□□□□□ -1.2
TOPBP1-201ENST00000260810 ZNFX1Q9P2E3 1918 aaKnown RBP7.53□□□□□ -1.2
TOPBP1-201ENST00000260810 KLRG2A4D1S0 409 aaPredicted RBP7.52□□□□□ -1.2
TOPBP1-201ENST00000260810 PTPN12Q05209 780 aaKnown RBP7.52□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms