RNA–Protein interactions for RNA: ENST00000219689.11

USP31-201, Transcript of ubiquitin specific peptidase 31, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP31, Length 10,699 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP31-201ENST00000219689 MICAL1Q8TDZ2 1067 aa12.71□□□□□ -0.37
USP31-201ENST00000219689 CUX1P39880 1505 aa12.71□□□□□ -0.37
USP31-201ENST00000219689 DDX58O95786 925 aaKnown RBP12.71□□□□□ -0.37
USP31-201ENST00000219689 TRIM22Q8IYM9 498 aa12.71□□□□□ -0.37
USP31-201ENST00000219689 CACNA2D4Q7Z3S7 1137 aa12.71□□□□□ -0.37
USP31-201ENST00000219689 APBB1IPQ7Z5R6 666 aaPredicted RBP12.71□□□□□ -0.37
USP31-201ENST00000219689 CCDC69A6NI79 296 aa12.71□□□□□ -0.37
USP31-201ENST00000219689 NOL3O60936 208 aaKnown RBP12.71□□□□□ -0.37
USP31-201ENST00000219689 SLC3A2P08195 630 aaKnown RBP12.71□□□□□ -0.37
USP31-201ENST00000219689 WHAMMP3Q1A5X7 153 aa12.71□□□□□ -0.37
USP31-201ENST00000219689 SAMD1Q6SPF0 538 aaPredicted RBP12.71□□□□□ -0.37
USP31-201ENST00000219689 TTC5Q8N0Z6 440 aa12.71□□□□□ -0.37
USP31-201ENST00000219689 TRIM4Q9C037 500 aa12.71□□□□□ -0.37
USP31-201ENST00000219689 TEFQ10587 303 aa12.71□□□□□ -0.38
USP31-201ENST00000219689 MYH11P35749 1972 aa12.71□□□□□ -0.38
USP31-201ENST00000219689 FKBP15Q5T1M5 1219 aa12.71□□□□□ -0.38
USP31-201ENST00000219689 TRIM68Q6AZZ1 485 aa12.71□□□□□ -0.38
USP31-201ENST00000219689 TAOK3Q9H2K8 898 aa12.71□□□□□ -0.38
USP31-201ENST00000219689 FAM184BQ9ULE4 1060 aa12.71□□□□□ -0.38
USP31-201ENST00000219689 GJB2P29033 226 aa12.7□□□□□ -0.38
USP31-201ENST00000219689 DIXDC1Q155Q3 683 aa12.7□□□□□ -0.38
USP31-201ENST00000219689 SRCIN1Q9C0H9 1055 aa12.7□□□□□ -0.38
USP31-201ENST00000219689 SMIM23A6NLE4 172 aa12.7□□□□□ -0.38
USP31-201ENST00000219689 HSP90AA4PQ58FG1 418 aa12.7□□□□□ -0.38
USP31-201ENST00000219689 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.7□□□□□ -0.38
USP31-201ENST00000219689 ZNF853P0CG23 659 aa12.7□□□□□ -0.38
USP31-201ENST00000219689 AIMP1Q12904 312 aaKnown RBP12.7□□□□□ -0.38
USP31-201ENST00000219689 HPDP32754 393 aaPredicted RBP12.7□□□□□ -0.38
USP31-201ENST00000219689 NUTM2FA1L443 756 aa12.7□□□□□ -0.38
USP31-201ENST00000219689 ZBTB16Q05516 673 aa12.7□□□□□ -0.38
USP31-201ENST00000219689 TYRO3Q06418 890 aa12.7□□□□□ -0.38
USP31-201ENST00000219689 MKRN1Q9UHC7 482 aaKnown RBP12.7□□□□□ -0.38
USP31-201ENST00000219689 CAPN7Q9Y6W3 813 aa12.7□□□□□ -0.38
USP31-201ENST00000219689 RAB3GAP1Q15042 981 aa12.69□□□□□ -0.38
USP31-201ENST00000219689 FSD2A1L4K1 749 aa12.69□□□□□ -0.38
USP31-201ENST00000219689 CCDC172P0C7W6 258 aa12.69□□□□□ -0.38
USP31-201ENST00000219689 NOP2P46087 812 aaKnown RBP12.69□□□□□ -0.38
USP31-201ENST00000219689 AOPEPQ8N6M6 819 aa12.69□□□□□ -0.38
USP31-201ENST00000219689 MRFAP1Q9Y605 127 aa12.69□□□□□ -0.38
USP31-201ENST00000219689 TMEM132AQ24JP5 1023 aa12.69□□□□□ -0.38
USP31-201ENST00000219689 CTCFLQ8NI51 663 aaPredicted RBP12.69□□□□□ -0.38
USP31-201ENST00000219689 NDUFAB1O14561 156 aa12.69□□□□□ -0.38
USP31-201ENST00000219689 VGFO15240 615 aaPredicted RBP12.69□□□□□ -0.38
USP31-201ENST00000219689 RIC3Q7Z5B4 369 aa12.69□□□□□ -0.38
USP31-201ENST00000219689 ZNF365Q70YC5 407 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 VPS36Q86VN1 386 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 DNAJC25Q9H1X3 360 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 SH2B1Q9NRF2 756 aaPredicted RBP12.68□□□□□ -0.38
USP31-201ENST00000219689 SPATS2LQ9NUQ6 558 aaKnown RBP12.68□□□□□ -0.38
USP31-201ENST00000219689 CWC25Q9NXE8 425 aaPredicted RBP12.68□□□□□ -0.38
USP31-201ENST00000219689 RUSC2Q8N2Y8 1516 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 DDX23Q9BUQ8 820 aaKnown RBP12.68□□□□□ -0.38
USP31-201ENST00000219689 MIA2Q96PC5 1412 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 CNNM3Q8NE01 707 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 CDKL5O76039 1030 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 SAMD15Q9P1V8 674 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 RIPOR2Q9Y4F9 1068 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 IFT81Q8WYA0 676 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 UBAC1Q9BSL1 405 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 ANAPC15P60006 121 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 LUC7L2Q9Y383 392 aaKnown RBP12.68□□□□□ -0.38
USP31-201ENST00000219689 LOC102724159A0A0B4J2E5 919 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 MACROD2A1Z1Q3 448 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 GNAI3P08754 354 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 PWP2Q15269 919 aaKnown RBP12.68□□□□□ -0.38
USP31-201ENST00000219689 E2F4Q16254 413 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 NGDNQ8NEJ9 315 aaKnown RBP12.68□□□□□ -0.38
USP31-201ENST00000219689 USH1CQ9Y6N9 552 aa12.68□□□□□ -0.38
USP31-201ENST00000219689 HOOK3Q86VS8 718 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 DDX27Q96GQ7 796 aaKnown RBP12.67□□□□□ -0.38
USP31-201ENST00000219689 SUPT6HQ7KZ85 1726 aaKnown RBP12.67□□□□□ -0.38
USP31-201ENST00000219689 EHBP1Q8NDI1 1231 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 RAB3IL1Q8TBN0 382 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 GBP5Q96PP8 586 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 GOLGA6CA6NDK9 693 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 GOLGA6DP0CG33 693 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 C8orf34Q49A92 452 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 LZTFL1Q9NQ48 299 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 GOLGA6AQ9NYA3 693 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 CEP131Q9UPN4 1083 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 LIMCH1Q9UPQ0 1083 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 STMN2Q93045 179 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 TACO1Q9BSH4 297 aaKnown RBP12.67□□□□□ -0.38
USP31-201ENST00000219689 ANKRD18BA2A2Z9 1011 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 SH2D4BQ5SQS7 431 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 GGT6Q6P531 493 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 FAM200AQ8TCP9 573 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 MORC4Q8TE76 937 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 LIG3P49916 1009 aa12.67□□□□□ -0.38
USP31-201ENST00000219689 HNRNPMP52272 730 aaKnown RBP eCLIP12.67□□□□□ -0.381e-6■■■■□ 20.5
USP31-201ENST00000219689 CEP85LQ5SZL2 805 aa12.66□□□□□ -0.38
USP31-201ENST00000219689 VIMP08670 466 aaKnown RBP12.66□□□□□ -0.38
USP31-201ENST00000219689 MTHFSP49914 203 aa12.66□□□□□ -0.38
USP31-201ENST00000219689 STIM2Q9P246 746 aa12.66□□□□□ -0.38
USP31-201ENST00000219689 IGHDP01880 384 aa12.66□□□□□ -0.38
USP31-201ENST00000219689 PRPF40BQ6NWY9 871 aaKnown RBP12.66□□□□□ -0.38
USP31-201ENST00000219689 RLBP1P12271 317 aa12.66□□□□□ -0.38
USP31-201ENST00000219689 TSNAXIP1Q2TAA8 658 aa12.66□□□□□ -0.38
USP31-201ENST00000219689 ZNF569Q5MCW4 686 aa12.66□□□□□ -0.38
USP31-201ENST00000219689 GBP7Q8N8V2 638 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms