RNA–Protein interactions for RNA: ENST00000218348.7

USP11-201, Transcript of ubiquitin specific peptidase 11, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP11, Length 3,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-201ENST00000218348 TRIM6-TRIM34B2RNG4 842 aa12.29□□□□□ -0.44
USP11-201ENST00000218348 CD2BP2O95400 341 aaKnown RBP12.29□□□□□ -0.44
USP11-201ENST00000218348 PHKG2P15735 406 aa12.29□□□□□ -0.44
USP11-201ENST00000218348 RNMTO43148 476 aaKnown RBP12.29□□□□□ -0.44
USP11-201ENST00000218348 RRP9O43818 475 aaKnown RBP12.29□□□□□ -0.44
USP11-201ENST00000218348 SDSP20132 328 aa12.29□□□□□ -0.44
USP11-201ENST00000218348 NUTM1Q86Y26 1132 aa12.29□□□□□ -0.44
USP11-201ENST00000218348 HSCBQ8IWL3 235 aa12.29□□□□□ -0.44
USP11-201ENST00000218348 HMMRO75330 724 aa12.28□□□□□ -0.44
USP11-201ENST00000218348 NFATC2IPQ8NCF5 419 aa12.28□□□□□ -0.44
USP11-201ENST00000218348 USP44Q9H0E7 712 aa12.28□□□□□ -0.44
USP11-201ENST00000218348 GZF1Q9H116 711 aaPredicted RBP12.28□□□□□ -0.44
USP11-201ENST00000218348 ATP10DQ9P241 1426 aa12.28□□□□□ -0.44
USP11-201ENST00000218348 HSP90AB1P08238 724 aaKnown RBP12.28□□□□□ -0.44
USP11-201ENST00000218348 CWF19L2Q2TBE0 894 aaKnown RBP12.28□□□□□ -0.44
USP11-201ENST00000218348 TAF1LQ8IZX4 1826 aa12.28□□□□□ -0.44
USP11-201ENST00000218348 HTATSF1O43719 755 aaKnown RBP12.27□□□□□ -0.44
USP11-201ENST00000218348 CDC45O75419 566 aa12.27□□□□□ -0.44
USP11-201ENST00000218348 SURF6O75683 361 aaKnown RBP12.27□□□□□ -0.44
USP11-201ENST00000218348 AKAP4Q5JQC9 854 aa12.27□□□□□ -0.44
USP11-201ENST00000218348 ZNF772Q68DY9 489 aaPredicted RBP12.27□□□□□ -0.44
USP11-201ENST00000218348 MARCH10Q8NA82 808 aaPredicted RBP12.27□□□□□ -0.44
USP11-201ENST00000218348 HEG1Q9ULI3 1381 aa12.27□□□□□ -0.44
USP11-201ENST00000218348 TTC22Q5TAA0 569 aa12.27□□□□□ -0.45
USP11-201ENST00000218348 NOL8Q76FK4 1167 aaKnown RBP12.27□□□□□ -0.45
USP11-201ENST00000218348 CDCA7Q9BWT1 371 aaPredicted RBP12.27□□□□□ -0.45
USP11-201ENST00000218348 QTRT2Q9H974 415 aaKnown RBP12.27□□□□□ -0.45
USP11-201ENST00000218348 AMOTQ4VCS5 1084 aa12.27□□□□□ -0.45
USP11-201ENST00000218348 SRCIN1Q9C0H9 1055 aa12.27□□□□□ -0.45
USP11-201ENST00000218348 SRGAP3O43295 1099 aa12.26□□□□□ -0.45
USP11-201ENST00000218348 EVA1CP58658 441 aa12.26□□□□□ -0.45
USP11-201ENST00000218348 OS9Q13438 667 aaPredicted RBP12.26□□□□□ -0.45
USP11-201ENST00000218348 PRDM4Q9UKN5 801 aa12.26□□□□□ -0.45
USP11-201ENST00000218348 PCDH11XQ9BZA7 1347 aa12.26□□□□□ -0.45
USP11-201ENST00000218348 PCDH11YQ9BZA8 1340 aa12.26□□□□□ -0.45
USP11-201ENST00000218348 PPP1R42Q7Z4L9 355 aa12.26□□□□□ -0.45
USP11-201ENST00000218348 MEX3CQ5U5Q3 659 aaKnown RBP12.26□□□□□ -0.45
USP11-201ENST00000218348 GNAI3P08754 354 aa12.25□□□□□ -0.45
USP11-201ENST00000218348 FAM98CQ17RN3 349 aaKnown RBP12.25□□□□□ -0.45
USP11-201ENST00000218348 SAMD1Q6SPF0 538 aaPredicted RBP12.25□□□□□ -0.45
USP11-201ENST00000218348 ZFP91Q96JP5 570 aaPredicted RBP12.25□□□□□ -0.45
USP11-201ENST00000218348 MAP3K2Q9Y2U5 619 aa12.25□□□□□ -0.45
USP11-201ENST00000218348 BRD2P25440 801 aaKnown RBP12.25□□□□□ -0.45
USP11-201ENST00000218348 FAM43AQ8N2R8 423 aa12.25□□□□□ -0.45
USP11-201ENST00000218348 C9orf78Q9NZ63 289 aaPredicted RBP12.25□□□□□ -0.45
USP11-201ENST00000218348 ZNF330Q9Y3S2 320 aaPredicted RBP12.25□□□□□ -0.45
USP11-201ENST00000218348 ZCRB1Q8TBF4 217 aaKnown RBP12.24□□□□□ -0.45
USP11-201ENST00000218348 DNAAF4Q8WXU2 420 aa12.24□□□□□ -0.45
USP11-201ENST00000218348 A0A0G2JS52 829 aa12.24□□□□□ -0.45
USP11-201ENST00000218348 RBM6P78332 1123 aaKnown RBP12.24□□□□□ -0.45
USP11-201ENST00000218348 DDX54Q8TDD1 881 aaKnown RBP12.24□□□□□ -0.45
USP11-201ENST00000218348 LRRCC1Q9C099 1032 aa12.24□□□□□ -0.45
USP11-201ENST00000218348 PA2G4Q9UQ80 394 aaKnown RBP12.24□□□□□ -0.45
USP11-201ENST00000218348 TATP17735 454 aaPredicted RBP12.24□□□□□ -0.45
USP11-201ENST00000218348 PDE1AP54750 535 aa12.24□□□□□ -0.45
USP11-201ENST00000218348 CCDC9Q9Y3X0 531 aaKnown RBP12.24□□□□□ -0.45
USP11-201ENST00000218348 KAT6BQ8WYB5 2073 aa12.23□□□□□ -0.45
USP11-201ENST00000218348 GSE1Q14687 1217 aa12.23□□□□□ -0.45
USP11-201ENST00000218348 SIL1Q9H173 461 aa12.23□□□□□ -0.45
USP11-201ENST00000218348 GIGYF1O75420 1035 aaPredicted RBP12.22□□□□□ -0.45
USP11-201ENST00000218348 ATP8B2P98198 1209 aa12.22□□□□□ -0.45
USP11-201ENST00000218348 N4BP2Q86UW6 1770 aaPredicted RBP12.22□□□□□ -0.45
USP11-201ENST00000218348 KIF2CQ99661 725 aa12.22□□□□□ -0.45
USP11-201ENST00000218348 VGLL3A8MV65 326 aa12.22□□□□□ -0.45
USP11-201ENST00000218348 PTCD1O75127 700 aaKnown RBP12.22□□□□□ -0.45
USP11-201ENST00000218348 FOXD4L5Q5VV16 416 aaPredicted RBP12.22□□□□□ -0.45
USP11-201ENST00000218348 SEPT12Q8IYM1 358 aa12.22□□□□□ -0.45
USP11-201ENST00000218348 KLHDC4Q8TBB5 520 aa12.22□□□□□ -0.45
USP11-201ENST00000218348 FOXD4L4Q8WXT5 416 aaPredicted RBP12.22□□□□□ -0.45
USP11-201ENST00000218348 ANTXR1Q9H6X2 564 aa12.22□□□□□ -0.45
USP11-201ENST00000218348 TUBGCP6Q96RT7 1819 aa12.21□□□□□ -0.45
USP11-201ENST00000218348 DTNBO60941 627 aa12.21□□□□□ -0.45
USP11-201ENST00000218348 RIC3Q7Z5B4 369 aa12.21□□□□□ -0.45
USP11-201ENST00000218348 ZNF496Q96IT1 587 aaPredicted RBP12.21□□□□□ -0.45
USP11-201ENST00000218348 DBF4Q9UBU7 674 aaPredicted RBP12.21□□□□□ -0.45
USP11-201ENST00000218348 SPG7Q9UQ90 795 aa12.21□□□□□ -0.45
USP11-201ENST00000218348 USP16Q9Y5T5 823 aa12.21□□□□□ -0.45
USP11-201ENST00000218348 SOS1Q07889 1333 aaPredicted RBP12.21□□□□□ -0.46
USP11-201ENST00000218348 MX1P20591 662 aa12.21□□□□□ -0.46
USP11-201ENST00000218348 ATP5J2-PTCD1G3V325 749 aa12.2□□□□□ -0.46
USP11-201ENST00000218348 IFNL2Q8IZJ0 200 aa12.2□□□□□ -0.46
USP11-201ENST00000218348 ANO2Q9NQ90 1003 aa12.2□□□□□ -0.46
USP11-201ENST00000218348 RRAGDQ9NQL2 400 aaPredicted RBP12.2□□□□□ -0.46
USP11-201ENST00000218348 NUP188Q5SRE5 1749 aa12.2□□□□□ -0.46
USP11-201ENST00000218348 RBM25P49756 843 aaKnown RBP12.2□□□□□ -0.46
USP11-201ENST00000218348 BEND3Q5T5X7 828 aa12.2□□□□□ -0.46
USP11-201ENST00000218348 PTF1AQ7RTS3 328 aa12.2□□□□□ -0.46
USP11-201ENST00000218348 DCAF5Q96JK2 942 aa12.2□□□□□ -0.46
USP11-201ENST00000218348 ZNF790Q6PG37 636 aa12.19□□□□□ -0.46
USP11-201ENST00000218348 CASC1Q6TDU7 716 aa12.19□□□□□ -0.46
USP11-201ENST00000218348 QSER1Q2KHR3 1735 aa12.19□□□□□ -0.46
USP11-201ENST00000218348 DDB1Q16531 1140 aa12.19□□□□□ -0.46
USP11-201ENST00000218348 COPS6Q7L5N1 327 aa12.19□□□□□ -0.46
USP11-201ENST00000218348 TTC5Q8N0Z6 440 aa12.19□□□□□ -0.46
USP11-201ENST00000218348 XAGE3Q8WTP9 111 aa12.19□□□□□ -0.46
USP11-201ENST00000218348 SLC52A2Q9HAB3 445 aa12.18□□□□□ -0.46
USP11-201ENST00000218348 ERVV-2B6SEH9 535 aa12.18□□□□□ -0.46
USP11-201ENST00000218348 CABP4P57796 275 aa12.18□□□□□ -0.46
USP11-201ENST00000218348 TPRNQ4KMQ1 711 aa12.18□□□□□ -0.46
USP11-201ENST00000218348 MYD88Q99836 296 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms