RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 BIVMQ86UB2 503 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 LACC1Q8IV20 430 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 DND1Q8IYX4 353 aaKnown RBP17.8■□□□□ 0.44
CLN3-262ENST00000637699 LINC01560Q8TB33 94 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 DIO2Q92813 273 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 TANKQ92844 425 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 EXT2Q93063 718 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 OR51B5Q9H339 312 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 PTBP2Q9UKA9 531 aaKnown RBP17.8■□□□□ 0.44
CLN3-262ENST00000637699 A0A1B0GTL3 188 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 CES2O00748 559 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 WISP3O95389 354 aaPredicted RBP17.79■□□□□ 0.44
CLN3-262ENST00000637699 ACSL3O95573 720 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 CD1DP15813 335 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 POU4F1Q01851 419 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 NTRK2Q16620 822 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 KHDRBS2Q5VWX1 349 aaKnown RBP17.79■□□□□ 0.44
CLN3-262ENST00000637699 TMEM198Q66K66 360 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 MED27Q6P2C8 311 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 RNF111Q6ZNA4 994 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 CAPN12Q6ZSI9 719 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 GPR180Q86V85 440 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 KIF18BQ86Y91 864 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 RNF175Q8N4F7 328 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 UBE2E3Q969T4 207 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 HSPBAP1Q96EW2 488 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 CMTM7Q96FZ5 175 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 ZNF597Q96LX8 424 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 MCMBPQ9BTE3 642 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 WWTR1Q9GZV5 400 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 MS4A12Q9NXJ0 267 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 NSMCE4AQ9NXX6 385 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 CAMK2AQ9UQM7 478 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 SLC6A5Q9Y345 797 aa17.79■□□□□ 0.44
CLN3-262ENST00000637699 WASHC1A8K0Z3 465 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 OR10H2O60403 315 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 TRIM3O75382 744 aaPredicted RBP17.78■□□□□ 0.44
CLN3-262ENST00000637699 S100BP04271 92 aaPredicted RBP17.78■□□□□ 0.44
CLN3-262ENST00000637699 CASP2P42575 452 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 BIKQ13323 160 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 DDX39BQ13838 428 aaKnown RBP17.78■□□□□ 0.44
CLN3-262ENST00000637699 DEPDC1Q5TB30 811 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 BICRALQ6AI39 1079 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 KLHL7Q8IXQ5 586 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 LAS2Q8IYD9 372 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 ST13P4Q8IZP2 240 aaPredicted RBP17.78■□□□□ 0.44
CLN3-262ENST00000637699 PDPRQ8NCN5 879 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 OR7G3Q8NG95 312 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 TSPAN17Q96FV3 270 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 C18orf12Q96KH6 178 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 TRIB1Q96RU8 372 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 CD244Q9BZW8 370 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 PLEKHF2Q9H8W4 249 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 SMYD2Q9NRG4 433 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 RNF112Q9ULX5 631 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 KIAA1549Q9HCM3 1950 aa17.78■□□□□ 0.44
CLN3-262ENST00000637699 EEF1E1-BLOC1S5C9J1V9 151 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 EEF1E1O43324 174 aaKnown RBP17.77■□□□□ 0.44
CLN3-262ENST00000637699 ADSLP30566 484 aaPredicted RBP17.77■□□□□ 0.44
CLN3-262ENST00000637699 TLX1P31314 330 aaPredicted RBP17.77■□□□□ 0.44
CLN3-262ENST00000637699 RPL21P46778 160 aaKnown RBP17.77■□□□□ 0.44
CLN3-262ENST00000637699 RAP1GDS1P52306 607 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 HNRNPH2P55795 449 aaKnown RBP17.77■□□□□ 0.44
CLN3-262ENST00000637699 SLC37A1P57057 533 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 FBXW4P57775 412 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 ATP6V0D1P61421 351 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 TNFRSF17Q02223 184 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 EBPQ15125 230 aaKnown RBP17.77■□□□□ 0.44
CLN3-262ENST00000637699 TOMM20Q15388 145 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 TBCELQ5QJ74 424 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 NSUN5P2Q63ZY6 315 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 LRRC70Q7Z2Q7 622 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 PM20D2Q8IYS1 436 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 TAGAPQ8N103 731 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 RIT1Q92963 219 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 RGMAQ96B86 450 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 GNRHR2Q96P88 292 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 TRIM31Q9BZY9 425 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 PRDM14Q9GZV8 571 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 PHF11Q9UIL8 331 aa17.77■□□□□ 0.44
CLN3-262ENST00000637699 ANKRD33BA6NCL7 494 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 GLOD5A6NK44 160 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 TP53I11O14683 189 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 GPR75O95800 540 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 HOXC12P31275 282 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 GMPRP36959 345 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 CDK9P50750 372 aaKnown RBP17.76■□□□□ 0.43
CLN3-262ENST00000637699 DR1Q01658 176 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 E2F2Q14209 437 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 POU4F3Q15319 338 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 SF3B4Q15427 424 aaKnown RBP eCLIP17.76■□□□□ 0.432e-7■■■■□ 24.8
CLN3-262ENST00000637699 SPRED3Q2MJR0 410 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 VASNQ6EMK4 673 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 SYDE1Q6ZW31 735 aaPredicted RBP17.76■□□□□ 0.43
CLN3-262ENST00000637699 RILPQ96NA2 401 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 YIPF4Q9BSR8 244 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 NEUROD4Q9HD90 331 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 PYCARDQ9ULZ3 195 aa17.76■□□□□ 0.43
CLN3-262ENST00000637699 NSD1Q96L73 2696 aaPredicted RBP17.76■□□□□ 0.43
CLN3-262ENST00000637699 C2orf92A0A1B0GVN3 265 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms