RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 SPATA33Q96N06 139 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 SLC46A1Q96NT5 459 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 MUS81Q96NY9 551 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 TSSK3Q96PN8 268 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 MTERF1Q99551 399 aaKnown RBP2.83□□□□□ -1.96
VIM-210ENST00000637053 TSC22D3Q99576 134 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 PAAF1Q9BRP4 392 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 FTHL17Q9BXU8 183 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 SLC46A2Q9BY10 475 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 POLDIP3Q9BY77 421 aaKnown RBP2.83□□□□□ -1.96
VIM-210ENST00000637053 SRRQ9GZT4 340 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 SPATC1LQ9H0A9 340 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 FOXP1Q9H334 677 aaPredicted RBP2.83□□□□□ -1.96
VIM-210ENST00000637053 FN3KQ9H479 309 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 ZNF703Q9H7S9 590 aaPredicted RBP2.83□□□□□ -1.96
VIM-210ENST00000637053 LPAR2Q9HBW0 351 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 SLC6A20Q9NP91 592 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 KCNK9Q9NPC2 374 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 OR2S2Q9NQN1 319 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 ASAH2Q9NR71 780 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 PXMP2Q9NR77 195 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 LANCL2Q9NS86 450 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 POT1Q9NUX5 634 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 NLGN3Q9NZ94 848 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 CD274Q9NZQ7 290 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 CTTNBP2NLQ9P2B4 639 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 MYEF2Q9P2K5 600 aaKnown RBP2.83□□□□□ -1.96
VIM-210ENST00000637053 HSFX1Q9UBD0 423 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 EIF3KQ9UBQ5 218 aaKnown RBP2.83□□□□□ -1.96
VIM-210ENST00000637053 ZFP69BQ9UJL9 534 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 FLVCR2Q9UPI3 526 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 ERVW-1Q9UQF0 538 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 PRG3Q9Y2Y8 225 aaPredicted RBP2.83□□□□□ -1.96
VIM-210ENST00000637053 OR10H1Q9Y4A9 318 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 TBL2Q9Y4P3 447 aaKnown RBP2.83□□□□□ -1.96
VIM-210ENST00000637053 KLK4Q9Y5K2 254 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 GMPPBQ9Y5P6 360 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 KLF2Q9Y5W3 355 aaPredicted RBP2.83□□□□□ -1.96
VIM-210ENST00000637053 CDY1Q9Y6F8 540 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 X6R8D5 127 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 UTYO14607 1347 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 XDHP47989 1333 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 ZNF521Q96K83 1311 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 ABCC11Q96J66 1382 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 CNTLNQ9NXG0 1405 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 TBC1D3DA0A087WVF3 549 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 TBC1D3IA0A087WXS9 549 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 TBC1D3EA0A087X179 549 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 TBC1D3KA0A087X1G2 549 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP2.82□□□□□ -1.96
VIM-210ENST00000637053 ESYT2A0FGR8 921 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 TMEM89A2RUT3 159 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 METTL21EPA6NDL7 271 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 TBC1D3BA6NDS4 549 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 TBC1D3FA6NER0 549 aaPredicted RBP2.82□□□□□ -1.96
VIM-210ENST00000637053 NEMP2A6NFY4 417 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 ZNF98A6NK75 572 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 SMIM23A6NLE4 172 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 OR2AT4A6NND4 320 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 TMEM114B3SHH9 223 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 TBC1D3LB9A6J9 549 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 NPIPA7E9PJI5 369 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 PPIAL4DF5H284 164 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 M0QYG6 137 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 P2RY10O00398 339 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 DLGAP1O14490 977 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 CCSO14618 274 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 STX7O15400 261 aaKnown RBP2.82□□□□□ -1.96
VIM-210ENST00000637053 CLOCKO15516 846 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 HSPA12AO43301 675 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 LRP3O75074 770 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 ADAP1O75689 374 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 RAD51DO75771 328 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 OR2F2O95006 317 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 TJP3O95049 919 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 SERPIND1P05546 499 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 CHRM4P08173 479 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 TBC1D3HP0C7X1 549 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 RD3LP0DJH9 198 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 NPIPA8P0DM63 369 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 PIM1P11309 404 aaPredicted RBP2.82□□□□□ -1.96
VIM-210ENST00000637053 ICAM2P13598 275 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 MYL6BP14649 208 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 AMD1P17707 334 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 XRCC1P18887 633 aaPredicted RBP2.82□□□□□ -1.96
VIM-210ENST00000637053 ANXA7P20073 488 aaKnown RBP2.82□□□□□ -1.96
VIM-210ENST00000637053 ITGALP20701 1170 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 FPR1P21462 350 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 UGT1A4P22310 534 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 MARCKSP29966 332 aaPredicted RBP2.82□□□□□ -1.96
VIM-210ENST00000637053 NTSR1P30989 418 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 HNRNPH3P31942 346 aaKnown RBP2.82□□□□□ -1.96
VIM-210ENST00000637053 UGT1A3P35503 534 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 UGT1A5P35504 534 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 CEACAM3P40198 252 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 ID1P41134 155 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 PTGFRP43088 359 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 ETV4P43268 484 aa2.82□□□□□ -1.96
VIM-210ENST00000637053 NSFP46459 744 aaKnown RBP2.82□□□□□ -1.96
VIM-210ENST00000637053 GPR12P47775 334 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms