RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 OGNP20774 298 aaKnown RBP12.59□□□□□ -0.39
SNX1-214ENST00000625244 HNRNPH1P31943 449 aaKnown RBP12.59□□□□□ -0.39
SNX1-214ENST00000625244 FDFT1P37268 417 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 MSH2P43246 934 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 MTTPP55157 894 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 LIM2P55344 173 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 ID2Q02363 134 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 CSHL1Q14406 222 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 NTRK2Q16620 822 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 BEX5Q5H9J7 111 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 TBCELQ5QJ74 424 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.59□□□□□ -0.39
SNX1-214ENST00000625244 CILP2Q8IUL8 1156 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 DND1Q8IYX4 353 aaKnown RBP12.59□□□□□ -0.39
SNX1-214ENST00000625244 FAM83FQ8NEG4 500 aaPredicted RBP12.59□□□□□ -0.39
SNX1-214ENST00000625244 OR56A3Q8NH54 315 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 AKAP1Q92667 903 aaKnown RBP eCLIP12.59□□□□□ -0.39
SNX1-214ENST00000625244 KCNJ9Q92806 393 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 GAL3ST3Q96A11 431 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 NAPGQ99747 312 aaPredicted RBP12.59□□□□□ -0.39
SNX1-214ENST00000625244 TMEM204Q9BSN7 226 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 ESRP2Q9H6T0 727 aaKnown RBP12.59□□□□□ -0.39
SNX1-214ENST00000625244 PARVBQ9HBI1 364 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 RAB6BQ9NRW1 208 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 ELOVL5Q9NYP7 299 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 MAPRE3Q9UPY8 281 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 DTX4Q9Y2E6 619 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 ZKSCAN5Q9Y2L8 839 aa12.59□□□□□ -0.39
SNX1-214ENST00000625244 NBEAL2Q6ZNJ1 2754 aa12.58□□□□□ -0.39
SNX1-214ENST00000625244 CMYA5Q8N3K9 4069 aa12.58□□□□□ -0.39
SNX1-214ENST00000625244 IGHV4-30-2A0A087WSY4 118 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 GOLGA6L10A0A0M3HER8 536 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 FRG2CA6NGY1 282 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 EIF3FO00303 357 aaPredicted RBP12.58□□□□□ -0.4
SNX1-214ENST00000625244 ERI3O43414 337 aaKnown RBP12.58□□□□□ -0.4
SNX1-214ENST00000625244 PGRP06401 933 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 THBS1P07996 1170 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 ETS1P14921 441 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 MASP1P48740 699 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 CASP9P55211 416 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 KLF1Q13351 362 aaPredicted RBP12.58□□□□□ -0.4
SNX1-214ENST00000625244 TMEM64Q6YI46 380 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 IL17RELQ6ZVW7 336 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 GRAMD2AQ8IUY3 354 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 KLHDC8AQ8IYD2 350 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 CNEP1R1Q8N9A8 125 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 GTPBP3Q969Y2 492 aaKnown RBP12.58□□□□□ -0.4
SNX1-214ENST00000625244 MS4A6EQ96DS6 147 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 PGM2Q96G03 612 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 OSBPL9Q96SU4 736 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 SLC39A3Q9BRY0 314 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 KIFC1Q9BW19 673 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 IL22Q9GZX6 179 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 FETUBQ9UGM5 382 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 SNX12Q9UMY4 172 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 DAPP1Q9UN19 280 aa12.58□□□□□ -0.4
SNX1-214ENST00000625244 TCRBV7S2A1N4TA0A589 114 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 PGRMC1O00264 195 aaKnown RBP12.57□□□□□ -0.4
SNX1-214ENST00000625244 SNX4O95219 450 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 PAMP19021 973 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 CERS1P27544 350 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 CASQ1P31415 396 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 KCNJ5P48544 419 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 FBXW4P57775 412 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 STXBP1P61764 594 aaKnown RBP12.57□□□□□ -0.4
SNX1-214ENST00000625244 DHX9Q08211 1270 aaKnown RBP12.57□□□□□ -0.4
SNX1-214ENST00000625244 SERTAD2Q14140 314 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 EFTUD2Q15029 972 aaKnown RBP eCLIP12.57□□□□□ -0.47e-14■■■■■ 31
SNX1-214ENST00000625244 DUPD1Q68J44 220 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 C12orf54Q6X4T0 127 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 DGAT2L6Q6ZPD8 337 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 PACS2Q86VP3 889 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 MEX3DQ86XN8 651 aaKnown RBP12.57□□□□□ -0.4
SNX1-214ENST00000625244 DOK4Q8TEW6 326 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 CTHRC1Q96CG8 243 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 PLPPR2Q96GM1 343 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 GAL3ST4Q96RP7 486 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 AIF1LQ9BQI0 150 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 FBXO6Q9NRD1 293 aaPredicted RBP12.57□□□□□ -0.4
SNX1-214ENST00000625244 INTS10Q9NVR2 710 aaKnown RBP12.57□□□□□ -0.4
SNX1-214ENST00000625244 SYBUQ9NX95 663 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 LIPT1Q9Y234 373 aa12.57□□□□□ -0.4
SNX1-214ENST00000625244 LRIT2A6NDA9 550 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 PLOD2O00469 737 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 GNB5O14775 395 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 IFNB1P01574 187 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 C8GP07360 202 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 CHMP24386 653 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 MGAT1P26572 445 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 PTPN6P29350 595 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 KIR2DL2P43627 348 aaPredicted RBP12.56□□□□□ -0.4
SNX1-214ENST00000625244 SLC6A12P48065 614 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 STARP49675 285 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 PLA2G16P53816 162 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 VLDLRP98155 873 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 PDLIM3Q53GG5 364 aaPredicted RBP12.56□□□□□ -0.4
SNX1-214ENST00000625244 LIPNQ5VXI9 398 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 TIGD3Q6B0B8 471 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 UGT3A1Q6NUS8 523 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 NEPROQ6NW34 567 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms