RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CYP20A1Q6UW02 462 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 QSOX2Q6ZRP7 698 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 LANCL3Q6ZV70 420 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 SNX32Q86XE0 403 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 FUNDC1Q8IVP5 155 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 ST6GALNAC3Q8NDV1 305 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 CATSPER1Q8NEC5 780 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 OR5T3Q8NGG3 340 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 SUN3Q8TAQ9 357 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 PRR7Q8TB68 274 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 GRHL3Q8TE85 626 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 FAR1Q8WVX9 515 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 OR51B5Q9H339 312 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 MMP25Q9NPA2 562 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 SDR39U1Q9NRG7 319 aaPredicted RBP11.84□□□□□ -0.51
PNKP-217ENST00000625216 NOP53Q9NZM5 478 aaKnown RBP11.84□□□□□ -0.51
PNKP-217ENST00000625216 VPS29Q9UBQ0 182 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 TAGLN3Q9UI15 199 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 NTNG1Q9Y2I2 539 aa11.84□□□□□ -0.51
PNKP-217ENST00000625216 USP9XQ93008 2570 aaPredicted RBP11.84□□□□□ -0.51
PNKP-217ENST00000625216 A0A088AWK7 358 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 IGHV3-20A0A0C4DH32 117 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 OR2W5A6NFC9 320 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 ANKDD1BA6NHY2 528 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 A8MUI8 341 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 C4orf51C9J302 202 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 SAP18O00422 153 aaKnown RBP11.83□□□□□ -0.52
PNKP-217ENST00000625216 ANKRD28O15084 1053 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 PRMT3O60678 531 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 CLEC3AO75596 197 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 UNC5CO95185 931 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 WDPCPO95876 746 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 CELA2AP08217 269 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 G6PDP11413 515 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 BCKDHAP12694 445 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 COX4I1P13073 169 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 EDN3P14138 238 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 SDC1P18827 310 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 ZNF10P21506 573 aaPredicted RBP11.83□□□□□ -0.52
PNKP-217ENST00000625216 IL12AP29459 219 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 PRDX6P30041 224 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 HNRNPH1P31943 449 aaKnown RBP11.83□□□□□ -0.52
PNKP-217ENST00000625216 HNRNPH2P55795 449 aaKnown RBP11.83□□□□□ -0.52
PNKP-217ENST00000625216 OR4D2P58180 307 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 RAB8AP61006 207 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 RAE1P78406 368 aaKnown RBP11.83□□□□□ -0.52
PNKP-217ENST00000625216 MAD2L1Q13257 205 aaPredicted RBP11.83□□□□□ -0.52
PNKP-217ENST00000625216 AGKQ53H12 422 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 SFT2D3Q587I9 215 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 PAPD4Q6PIY7 484 aaKnown RBP11.83□□□□□ -0.52
PNKP-217ENST00000625216 FAM180AQ6UWF9 173 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 MIER2Q8N344 545 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 LIX1Q8N485 282 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 C1orf52Q8N6N3 182 aaKnown RBP11.83□□□□□ -0.52
PNKP-217ENST00000625216 BCORP1Q8N888 145 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 SSC4DQ8WTU2 575 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 CHTF18Q8WVB6 975 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 GAL3ST3Q96A11 431 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 C11orf24Q96F05 449 aaPredicted RBP11.83□□□□□ -0.52
PNKP-217ENST00000625216 NSL1Q96IY1 281 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 TEX37Q96LM6 180 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 SERPINI1Q99574 410 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 NPLQ9BXD5 320 aaPredicted RBP11.83□□□□□ -0.52
PNKP-217ENST00000625216 EBPLQ9BY08 206 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.83□□□□□ -0.52
PNKP-217ENST00000625216 PRM3Q9NNZ6 103 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 PLA2G3Q9NZ20 509 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 ABI3Q9P2A4 366 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 ADGRE2Q9UHX3 823 aa11.83□□□□□ -0.52
PNKP-217ENST00000625216 USP9YO00507 2555 aaPredicted RBP11.83□□□□□ -0.52
PNKP-217ENST00000625216 BLACEA4D250 179 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 LRIT2A6NDA9 550 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 SYNDIG1LA6NDD5 238 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 OR5H15A6NDH6 313 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 ANKRD65E5RJM6 399 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 NR5A2O00482 541 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 B4GALT2O60909 372 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 DNAJB6O75190 326 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 CDC123O75794 336 aaPredicted RBP11.82□□□□□ -0.52
PNKP-217ENST00000625216 CALB2P22676 271 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 TACR1P25103 407 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 TIA1P31483 386 aaKnown RBP eCLIP11.82□□□□□ -0.52
PNKP-217ENST00000625216 TAS2R50P59544 299 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 UFM1P61960 85 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 BTN3A2P78410 334 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 IRX1P78414 480 aaPredicted RBP11.82□□□□□ -0.52
PNKP-217ENST00000625216 ACSM2AQ08AH3 577 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 ESPL1Q14674 2120 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 PTGR1Q14914 329 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 MEP1AQ16819 746 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 ADPRMQ3LIE5 342 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 TOR1AIP1Q5JTV8 583 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 ACER2Q5QJU3 275 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 KHDRBS2Q5VWX1 349 aaKnown RBP11.82□□□□□ -0.52
PNKP-217ENST00000625216 ACSM2BQ68CK6 577 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 NOXRED1Q6NXP6 359 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 COMMD6Q7Z4G1 85 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 SHISA5Q8N114 240 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 LGI4Q8N135 537 aa11.82□□□□□ -0.52
PNKP-217ENST00000625216 METTL4Q8N3J2 472 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms