RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 RBM12BQ8IXT5 1001 aaKnown RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 OR51G2Q8NGK0 314 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 SLC39A1Q9NY26 324 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 ANKMY1Q9P2S6 941 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 FAAHO00519 579 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 CBFA2T3O75081 653 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 HLA-DPB1P04440 258 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 PRSS56P0CW18 603 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 GRK5P34947 590 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 AP2S1P53680 142 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 MLC1Q15049 377 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 OR4D1Q15615 310 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 HNRNPA1L2Q32P51 320 aaKnown RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 SPATS1Q496A3 300 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 RPL13AP3Q6NVV1 102 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 DCP2Q8IU60 420 aaKnown RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 OR6C4Q8NGE1 309 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 SH3BGRL2Q9UJC5 107 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 NRXN3Q9Y4C0 1643 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 GGT3PA6NGU5 568 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 SMAD9O15198 467 aaKnown RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 H6PDO95479 791 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 CFL1P23528 166 aaKnown RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 CST5P28325 142 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 EPHA4P54764 986 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 GRIK2Q13002 908 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 FADDQ13158 208 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 UGT3A2Q3SY77 523 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 UNC50Q53HI1 259 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 RNF220Q5VTB9 566 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 SLC25A25Q6KCM7 469 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 C3orf33Q6P1S2 294 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 HTR3DQ70Z44 454 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 PACRGLQ8N7B6 248 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 OR51A7Q8NH64 312 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 ELP5Q8TE02 316 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 HS6ST2Q96MM7 605 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 PMF1-BGLAPU3KQ54 211 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 S100A9P06702 114 aaKnown RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 GRB7Q14451 532 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 GINS1Q14691 196 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 EEF1A1P5Q5VTE0 462 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 ZER1Q7Z7L7 766 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 SCD5Q86SK9 330 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 IL17RCQ8NAC3 791 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 OR2T33Q8NG76 320 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 OR13C3Q8NGS6 347 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 THRSPQ92748 146 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 SLC46A2Q9BY10 475 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 SRA1Q9HD15 236 aaKnown RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 TIMMDC1Q9NPL8 285 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 DHDHQ9UQ10 334 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 NUMBLQ9Y6R0 609 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 OR2AT4A6NND4 320 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 DISC1C4P0D8 188 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 E2F3O00716 465 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 SNU13P55769 128 aaKnown RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 GTF2IRD2BQ6EKJ0 949 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 GTF2IRD2Q86UP8 949 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 SLC5A8Q8N695 610 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 PIP5K1AQ99755 562 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 MROQ9BYG7 248 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 ENTPD2Q9Y5L3 495 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 HCFC2Q9Y5Z7 792 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 OR52A4PA6NMU1 304 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 RAD51DO75771 328 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 NAA10P41227 235 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 SOX2P48431 317 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 ARSDP51689 593 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 SLC18A1P54219 525 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 ST3GAL4Q11206 333 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 KIAA1614Q5VZ46 1190 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 CST9Q5W186 159 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 ATG9BQ674R7 924 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 MSANTD1Q6ZTZ1 278 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 VASH1Q7L8A9 365 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 UBE2Q1Q7Z7E8 422 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 TMEFF1Q8IYR6 380 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 C16orf78Q8WTQ4 265 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 AURKBQ96GD4 344 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-219ENST00000620786 ALOXE3Q9BYJ1 711 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 HOXD1Q9GZZ0 328 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 PREBQ9HCU5 417 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 SLC7A8Q9UHI5 535 aa10.86□□□□□ -0.67
CLIP1-219ENST00000620786 PRSS38A1L453 326 aa10.85□□□□□ -0.67
CLIP1-219ENST00000620786 SGK494L7N484 410 aa10.85□□□□□ -0.67
CLIP1-219ENST00000620786 CDRT1O95170 752 aa10.85□□□□□ -0.67
CLIP1-219ENST00000620786 PLATP00750 562 aa10.85□□□□□ -0.67
CLIP1-219ENST00000620786 FGF3P11487 239 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-219ENST00000620786 CERS1P27544 350 aa10.85□□□□□ -0.67
CLIP1-219ENST00000620786 CD38P28907 300 aa10.85□□□□□ -0.67
CLIP1-219ENST00000620786 GRPRP30550 384 aa10.85□□□□□ -0.67
CLIP1-219ENST00000620786 EMP2P54851 167 aa10.85□□□□□ -0.67
CLIP1-219ENST00000620786 RAB6CQ53S08 254 aa10.85□□□□□ -0.67
CLIP1-219ENST00000620786 FAM78AQ5JUQ0 283 aa10.85□□□□□ -0.67
CLIP1-219ENST00000620786 IER5LQ5T953 404 aa10.85□□□□□ -0.67
CLIP1-219ENST00000620786 CES4AQ5XG92 561 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms