RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 MRPL14Q6P1L8 145 aaKnown RBP7.53□□□□□ -1.2
CPNE3-209ENST00000620393 C8orf82Q6P1X6 216 aaPredicted RBP7.53□□□□□ -1.2
CPNE3-209ENST00000620393 C16orf89Q6UX73 402 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 C6orf15Q6UXA7 325 aaPredicted RBP7.53□□□□□ -1.2
CPNE3-209ENST00000620393 QSOX2Q6ZRP7 698 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 ZNF621Q6ZSS3 439 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 ASRGL1Q7L266 308 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 ZNF771Q7L3S4 317 aaPredicted RBP7.53□□□□□ -1.2
CPNE3-209ENST00000620393 ZNF551Q7Z340 670 aaPredicted RBP7.53□□□□□ -1.2
CPNE3-209ENST00000620393 TIPARPQ7Z3E1 657 aaKnown RBP7.53□□□□□ -1.2
CPNE3-209ENST00000620393 MARCH9Q86YJ5 346 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 ZC3H7AQ8IWR0 971 aaKnown RBP7.53□□□□□ -1.2
CPNE3-209ENST00000620393 SCUBE1Q8IWY4 988 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 GALNT6Q8NCL4 622 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 ZFP28Q8NHY6 868 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 PSMA8Q8TAA3 256 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 SUN3Q8TAQ9 357 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 STT3BQ8TCJ2 826 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 MR1Q95460 341 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 FKBP10Q96AY3 582 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 RBM18Q96H35 190 aaKnown RBP7.53□□□□□ -1.2
CPNE3-209ENST00000620393 PTCHD1Q96NR3 888 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 SLC46A1Q96NT5 459 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 CGREF1Q99674 301 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 GPATCH1Q9BRR8 931 aaKnown RBP7.53□□□□□ -1.2
CPNE3-209ENST00000620393 ALOXE3Q9BYJ1 711 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 TRIM4Q9C037 500 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 CHST8Q9H2A9 424 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 IL1RL2Q9HB29 575 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 NECTIN3Q9NQS3 549 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 NDE1Q9NXR1 346 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 TAS2R9Q9NYW1 312 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 IFT80Q9P2H3 777 aaPredicted RBP7.53□□□□□ -1.2
CPNE3-209ENST00000620393 ENTPD4Q9Y227 616 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 PCDHB14Q9Y5E9 798 aa7.53□□□□□ -1.2
CPNE3-209ENST00000620393 MDC1Q14676 2089 aaKnown RBP7.53□□□□□ -1.2
CPNE3-209ENST00000620393 SPTBP11277 2137 aa7.52□□□□□ -1.2
CPNE3-209ENST00000620393 ZNF292O60281 2723 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 SEC16AO15027 2179 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 IGKV3D-11A0A0A0MRZ8 115 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 TRBV5-3A0A0A0MS03 114 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 A0A1W2PS29 197 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 C9J4A7 227 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 TGFBR3LH3BV60 316 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 FXYD1O00168 92 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 PLOD2O00469 737 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 GSC2O15499 205 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 CNOT3O75175 753 aaKnown RBP7.52□□□□□ -1.21
CPNE3-209ENST00000620393 CDC123O75794 336 aaPredicted RBP7.52□□□□□ -1.21
CPNE3-209ENST00000620393 ANP32DO95626 131 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 ATP1B1P05026 303 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 ABCB1P08183 1280 aaPredicted RBP7.52□□□□□ -1.21
CPNE3-209ENST00000620393 CD63P08962 238 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 HOXB9P17482 250 aaPredicted RBP7.52□□□□□ -1.21
CPNE3-209ENST00000620393 UQCRC2P22695 453 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 SLC6A2P23975 617 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 RBMS1P29558 406 aaKnown RBP7.52□□□□□ -1.21
CPNE3-209ENST00000620393 GALNSP34059 522 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 CDKN2CP42773 168 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 EMP2P54851 167 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 RHAGQ02094 409 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 FOXC1Q12948 553 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 MAP7Q14244 749 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 NKG7Q16617 165 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 MINDY4Q4G0A6 757 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 DNAL1Q4LDG9 190 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 NANOGP8Q6NSW7 305 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 FAM199XQ6PEV8 388 aaPredicted RBP7.52□□□□□ -1.21
CPNE3-209ENST00000620393 IGF2-ASQ6U949 168 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 DHDDSQ86SQ9 333 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 MSRB3Q8IXL7 192 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 SLC15A3Q8IY34 581 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 DEFB107AQ8IZN7 70 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 ST13P4Q8IZP2 240 aaPredicted RBP7.52□□□□□ -1.21
CPNE3-209ENST00000620393 PGAM4Q8N0Y7 254 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 LRRC25Q8N386 305 aaPredicted RBP7.52□□□□□ -1.21
CPNE3-209ENST00000620393 ESX1Q8N693 406 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 TRIML2Q8N7C3 387 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 OR4A15Q8NGL6 344 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 PPWD1Q96BP3 646 aaKnown RBP7.52□□□□□ -1.21
CPNE3-209ENST00000620393 ELP4Q96EB1 424 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 ANKRD27Q96NW4 1050 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 CDRT15Q96T59 188 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 SH3GL1Q99961 368 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 USB1Q9BQ65 265 aaKnown RBP7.52□□□□□ -1.21
CPNE3-209ENST00000620393 RBCK1Q9BYM8 510 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 NRSN2Q9GZP1 204 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 VN1R1Q9GZP7 353 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 LRMDAQ9H2I8 198 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 CXorf36Q9H7Y0 433 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 WDR54Q9H977 334 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 NANOGQ9H9S0 305 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 SLC6A13Q9NSD5 602 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 C14orf105Q9NVL8 296 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 SLC25A37Q9NYZ2 338 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 FOXJ2Q9P0K8 574 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 VAPAQ9P0L0 249 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 CTSFQ9UBX1 484 aa7.52□□□□□ -1.21
CPNE3-209ENST00000620393 GPN3Q9UHW5 284 aaPredicted RBP7.52□□□□□ -1.21
CPNE3-209ENST00000620393 MKL2Q9ULH7 1088 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms