RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 SIX3O95343 332 aaPredicted RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 CLDN9O95484 217 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 GBAP04062 536 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 CLPSP04118 112 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 HOXD4P09016 255 aaPredicted RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 FBXO45P0C2W1 286 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 RFPL3SP0C7P2 107 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 SLC35E2P0CK97 266 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 GLI4P10075 376 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 MSX1P28360 303 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 SERPINB3P29508 390 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 GALNSP34059 522 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 PIK3CGP48736 1102 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 MAN2A2P49641 1150 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 SLC37A1P57057 533 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 HERVK_113P63132 956 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 ERVK-8P63133 956 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 PHEXP78562 749 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 TBL3Q12788 808 aaKnown RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 UAP1Q16222 522 aaPredicted RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 SPRED3Q2MJR0 410 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 UBAP2Q5T6F2 1119 aaKnown RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 CYP20A1Q6UW02 462 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 RNF111Q6ZNA4 994 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 SLC29A4Q7RTT9 530 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 RELL1Q8IUW5 271 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 DMRTC2Q8IXT2 367 aaPredicted RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 PLD6Q8N2A8 252 aaKnown RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 OR10Q1Q8NGQ4 319 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 SPACA9Q96E40 222 aaPredicted RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 PHF21BQ96EK2 531 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 CDK15Q96Q40 435 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 PELOQ9BRX2 385 aaKnown RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 CNPPD1Q9BV87 410 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 ERVK-6Q9BXR3 956 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 WWTR1Q9GZV5 400 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 VPS11Q9H270 941 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 ACSS3Q9H6R3 686 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 NOL11Q9H8H0 719 aaKnown RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 ZFP64Q9NPA5 681 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 RYDENQ9NUL5 291 aaKnown RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.02□□□□□ -1.29
CUX1-219ENST00000606749 ZNF358Q9NW07 568 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 LYARQ9NX58 379 aaKnown RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 CNIH4Q9P003 139 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 CPSF2Q9P2I0 782 aaKnown RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 ERVK-19Q9WJR5 959 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 FAM215AQ9Y5M1 114 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 CHCHD2Q9Y6H1 151 aaPredicted RBP7.02□□□□□ -1.29
CUX1-219ENST00000606749 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.02□□□□□ -1.29
CUX1-219ENST00000606749 DNAJC13O75165 2243 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 ABCA12Q86UK0 2595 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 HCFC1P51610 2035 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 PHF3Q92576 2039 aaKnown RBP7.01□□□□□ -1.29
CUX1-219ENST00000606749 TACC2O95359 2948 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 A0A0G2JNJ9 132 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 A0A1W2PS29 197 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 OR6C76A6NM76 312 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 FIGNL2A6NMB9 653 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 FOXO6A8MYZ6 492 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 WDR1O75083 606 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 AIFM1O95831 613 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 KLK1P06870 262 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 RBP1P09455 135 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 NR2F6P10588 404 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 ENDOUP21128 410 aaKnown RBP7.01□□□□□ -1.29
CUX1-219ENST00000606749 PHBP35232 272 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 ZFP36L2P47974 494 aaKnown RBP7.01□□□□□ -1.29
CUX1-219ENST00000606749 SERPINB8P50452 374 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 KCNJ2P63252 427 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 EBPQ15125 230 aaKnown RBP7.01□□□□□ -1.29
CUX1-219ENST00000606749 TESK1Q15569 626 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 NTRK2Q16620 822 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 TECRLQ5HYJ1 363 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 WLSQ5T9L3 541 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 PRAMEF20Q5VT98 475 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 C8orf74Q6P047 294 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 B3GNT6Q6ZMB0 384 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 LIX1LQ8IVB5 337 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 DND1Q8IYX4 353 aaKnown RBP7.01□□□□□ -1.29
CUX1-219ENST00000606749 LRRC25Q8N386 305 aaPredicted RBP7.01□□□□□ -1.29
CUX1-219ENST00000606749 FBXW8Q8N3Y1 598 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 PTGR2Q8N8N7 351 aaPredicted RBP7.01□□□□□ -1.29
CUX1-219ENST00000606749 ZNF441Q8N8Z8 693 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 FAM13CQ8NE31 585 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 OR10G3Q8NGC4 313 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 OR52B6Q8NGF0 335 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 SLC44A1Q8WWI5 657 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 ATP6V1E2Q96A05 226 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 TP53INP1Q96A56 240 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 SARAFQ96BY9 339 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 JSRP1Q96MG2 331 aaPredicted RBP7.01□□□□□ -1.29
CUX1-219ENST00000606749 NSUN5Q96P11 429 aaKnown RBP7.01□□□□□ -1.29
CUX1-219ENST00000606749 GAL3ST4Q96RP7 486 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 SERPINI1Q99574 410 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 NTMT1Q9BV86 223 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 FUT8Q9BYC5 575 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 EXO5Q9H790 373 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 WDR41Q9HAD4 459 aa7.01□□□□□ -1.29
CUX1-219ENST00000606749 CXorf21Q9HAI6 301 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms