RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 EXO5Q9H790 373 aa5.59□□□□□ -1.51
VRK3-220ENST00000600259 CALHM2Q9HA72 323 aa5.59□□□□□ -1.51
VRK3-220ENST00000600259 NEUROD4Q9HD90 331 aa5.59□□□□□ -1.51
VRK3-220ENST00000600259 SMYD2Q9NRG4 433 aa5.59□□□□□ -1.51
VRK3-220ENST00000600259 DNAJC11Q9NVH1 559 aa5.59□□□□□ -1.51
VRK3-220ENST00000600259 BEX4Q9NWD9 120 aaPredicted RBP5.59□□□□□ -1.51
VRK3-220ENST00000600259 CTNNAL1Q9UBT7 734 aa5.59□□□□□ -1.51
VRK3-220ENST00000600259 BOKQ9UMX3 212 aaPredicted RBP5.59□□□□□ -1.51
VRK3-220ENST00000600259 SLC6A5Q9Y345 797 aa5.59□□□□□ -1.51
VRK3-220ENST00000600259 ASB4Q9Y574 426 aa5.59□□□□□ -1.51
VRK3-220ENST00000600259 ANK3Q12955 4377 aaKnown RBP5.59□□□□□ -1.51
VRK3-220ENST00000600259 NBEAL1Q6ZS30 2694 aa5.59□□□□□ -1.52
VRK3-220ENST00000600259 ROS1P08922 2347 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 RTTNQ86VV8 2226 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 FAM95CA0A1B0GW59 222 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 A0A1W2PS29 197 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 PABPN1LA6NDY0 278 aaKnown RBP5.58□□□□□ -1.52
VRK3-220ENST00000600259 CLGNO14967 610 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 PRKRAO75569 313 aaKnown RBP5.58□□□□□ -1.52
VRK3-220ENST00000600259 STK16O75716 305 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 GPR75O95800 540 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 TGFB1P01137 390 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 FREM3P0C091 2139 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 CPN1P15169 458 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 ALOX15P16050 662 aaPredicted RBP5.58□□□□□ -1.52
VRK3-220ENST00000600259 S1PR1P21453 382 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 CPN2P22792 545 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 SERPINB3P29508 390 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 HPDP32754 393 aaPredicted RBP5.58□□□□□ -1.52
VRK3-220ENST00000600259 GALNSP34059 522 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 OPRM1P35372 400 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 CASP3P42574 277 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 RPL21P46778 160 aaKnown RBP5.58□□□□□ -1.52
VRK3-220ENST00000600259 HSPA7P48741 367 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 NAGLUP54802 743 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 HNRNPH2P55795 449 aaKnown RBP5.58□□□□□ -1.52
VRK3-220ENST00000600259 HERVK_113P63132 956 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 ERVK-8P63133 956 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 MGAT5Q09328 741 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 CHIT1Q13231 466 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 SLAMF1Q13291 335 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 POU4F3Q15319 338 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 OR4D1Q15615 310 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 SPRED3Q2MJR0 410 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 TMEM35AQ53FP2 167 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 EIPR1Q53HC9 387 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 OR4C11Q6IEV9 310 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 SULT1C3Q6IMI6 304 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 PRSS57Q6UWY2 283 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 DND1Q8IYX4 353 aaKnown RBP5.58□□□□□ -1.52
VRK3-220ENST00000600259 ST13P4Q8IZP2 240 aaPredicted RBP5.58□□□□□ -1.52
VRK3-220ENST00000600259 LRRC75A-AS1Q8N1F1 130 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 RNF175Q8N4F7 328 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 SPATA6LQ8N4H0 392 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 ZNF615Q8N8J6 731 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 FAM13CQ8NE31 585 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 SRFBP1Q8NEF9 429 aaKnown RBP5.58□□□□□ -1.52
VRK3-220ENST00000600259 C7orf57Q8NEG2 295 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 OR7G3Q8NG95 312 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 ACTRT1Q8TDG2 376 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 SLC44A1Q8WWI5 657 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 IGFBPL1Q8WX77 278 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 SMPDL3BQ92485 455 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 TANKQ92844 425 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 ADIPOR1Q96A54 375 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 TP53INP1Q96A56 240 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 LRRC39Q96DD0 335 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 RBM18Q96H35 190 aaKnown RBP5.58□□□□□ -1.52
VRK3-220ENST00000600259 UBXN10Q96LJ8 280 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 DGAT2Q96PD7 388 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 UCN2Q96RP3 112 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 PIP5K1AQ99755 562 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 DOHHQ9BU89 302 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 EFCAB11Q9BUY7 163 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 ERVK-6Q9BXR3 956 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 ROGDIQ9GZN7 287 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 WWTR1Q9GZV5 400 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 OR51B5Q9H339 312 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 RPF2Q9H7B2 306 aaKnown RBP5.58□□□□□ -1.52
VRK3-220ENST00000600259 POPDC3Q9HBV1 291 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 WWOXQ9NZC7 414 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 COPS7AQ9UBW8 275 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 ADAM21Q9UKJ8 722 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 CHMP2BQ9UQN3 213 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 ERVK-19Q9WJR5 959 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 MTO1Q9Y2Z2 717 aaKnown RBP5.58□□□□□ -1.52
VRK3-220ENST00000600259 NPFFR2Q9Y5X5 522 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 ARHGAP21Q5T5U3 1957 aa5.58□□□□□ -1.52
VRK3-220ENST00000600259 SONP18583 2426 aaKnown RBP5.57□□□□□ -1.52
VRK3-220ENST00000600259 C15orf38-AP3S2A0A0A6YYH1 394 aa5.57□□□□□ -1.52
VRK3-220ENST00000600259 A0A1W2PR48 441 aa5.57□□□□□ -1.52
VRK3-220ENST00000600259 NCF1BA6NI72 391 aaPredicted RBP5.57□□□□□ -1.52
VRK3-220ENST00000600259 OR6C76A6NM76 312 aa5.57□□□□□ -1.52
VRK3-220ENST00000600259 NCF1CA8MVU1 366 aaPredicted RBP5.57□□□□□ -1.52
VRK3-220ENST00000600259 A8MXE2 369 aa5.57□□□□□ -1.52
VRK3-220ENST00000600259 DEFB108AA8MXU0 73 aa5.57□□□□□ -1.52
VRK3-220ENST00000600259 CXorf49A8MYA2 514 aaPredicted RBP5.57□□□□□ -1.52
VRK3-220ENST00000600259 E7ESA3 106 aa5.57□□□□□ -1.52
VRK3-220ENST00000600259 H7C1Q1 480 aa5.57□□□□□ -1.52
VRK3-220ENST00000600259 SAP18O00422 153 aaKnown RBP5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms