RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 NUP107P57740 925 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 HYAL4Q2M3T9 481 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 TSNAXIP1Q2TAA8 658 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 ZNF791Q3KP31 576 aaPredicted RBP9.04□□□□□ -0.96
VRK3-216ENST00000599342 EMC4Q5J8M3 183 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 HLA-DQA1Q5Y7H0 255 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 OR52E8Q6IFG1 317 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 MRM1Q6IN84 353 aaKnown RBP9.04□□□□□ -0.96
VRK3-216ENST00000599342 B3GNT6Q6ZMB0 384 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 DGAT2L6Q6ZPD8 337 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 TRILQ7L0X0 811 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 TAGAPQ8N103 731 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 FBXW8Q8N3Y1 598 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 LILRB4Q8NHJ6 448 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 WDR20Q8TBZ3 569 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 DOK4Q8TEW6 326 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 PAQR8Q8TEZ7 354 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 PHF21BQ96EK2 531 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 JSRP1Q96MG2 331 aaPredicted RBP9.04□□□□□ -0.96
VRK3-216ENST00000599342 CDK15Q96Q40 435 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 SERPINI1Q99574 410 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 ZNF717Q9BY31 904 aaPredicted RBP9.04□□□□□ -0.96
VRK3-216ENST00000599342 WWTR1Q9GZV5 400 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 TSPYL1Q9H0U9 437 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 ZNF703Q9H7S9 590 aaPredicted RBP9.04□□□□□ -0.96
VRK3-216ENST00000599342 NOL11Q9H8H0 719 aaKnown RBP9.04□□□□□ -0.96
VRK3-216ENST00000599342 PSD3Q9NYI0 1048 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 AHSPQ9NZD4 102 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 CNIH4Q9P003 139 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 B4GALT7Q9UBV7 327 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 ITGB1BP2Q9UKP3 347 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 ASB4Q9Y574 426 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 CREBBPQ92793 2442 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 C2orf92A0A1B0GVN3 265 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 A0A1W2PR48 441 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 FAM47E-STBD1D6RA91 191 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 STX16-NPEPL1H3BU86 382 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 OR7A17O14581 309 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 STX16O14662 325 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 HCN1O60741 890 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 WDR1O75083 606 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 KRT38O76015 456 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 SEMA3DO95025 777 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 NADKO95544 446 aaPredicted RBP9.03□□□□□ -0.96
VRK3-216ENST00000599342 GBAP04062 536 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 CELA3AP09093 270 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 FBXO45P0C2W1 286 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 SLC35E2P0CK97 266 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 GABRA1P14867 456 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 MSX1P28360 303 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 GALNSP34059 522 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 TMED10P49755 219 aaKnown RBP9.03□□□□□ -0.96
VRK3-216ENST00000599342 SERPINB9P50453 376 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 NEK2P51955 445 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 SLC37A1P57057 533 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 FOXO1Q12778 655 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 GTF3C1Q12789 2109 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 IFT88Q13099 833 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 EBPQ15125 230 aaKnown RBP9.03□□□□□ -0.96
VRK3-216ENST00000599342 WHAMMP3Q1A5X7 153 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 TBCELQ5QJ74 424 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 C10orf62Q5T681 223 aaPredicted RBP9.03□□□□□ -0.96
VRK3-216ENST00000599342 FRG2Q64ET8 278 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 PAGE2Q7Z2X7 111 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 RELL1Q8IUW5 271 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 CCDC71Q8IV32 467 aaPredicted RBP9.03□□□□□ -0.96
VRK3-216ENST00000599342 GALNT12Q8IXK2 581 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 PLD6Q8N2A8 252 aaKnown RBP9.03□□□□□ -0.96
VRK3-216ENST00000599342 LIX1Q8N485 282 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 ACBD4Q8NC06 268 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 OR10G3Q8NGC4 313 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 OR52B6Q8NGF0 335 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 SLC44A1Q8WWI5 657 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 ZNF597Q96LX8 424 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 C16orf45Q96MC5 204 aaPredicted RBP9.03□□□□□ -0.96
VRK3-216ENST00000599342 GPR78Q96P69 363 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 FRG2BQ96QU4 278 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 PAFAH2Q99487 392 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 FMO2Q99518 471 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 TTYH2Q9BSA4 534 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 DOHHQ9BU89 302 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 UCK2Q9BZX2 261 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 CDC42EP4Q9H3Q1 356 aaKnown RBP9.03□□□□□ -0.96
VRK3-216ENST00000599342 MCCC2Q9HCC0 563 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 SH2D2AQ9NP31 389 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 ZFP64Q9NPA5 681 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 SEMA4BQ9NPR2 832 aaPredicted RBP9.03□□□□□ -0.96
VRK3-216ENST00000599342 ALKBH4Q9NXW9 302 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 XPR1Q9UBH6 696 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 TNFRSF10DQ9UBN6 386 aa9.03□□□□□ -0.96
VRK3-216ENST00000599342 MYO9AB2RTY4 2548 aa9.02□□□□□ -0.96
VRK3-216ENST00000599342 WASHC1A8K0Z3 465 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 TP53I11O14683 189 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 GUCY1B2O75343 617 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 TOXO94900 526 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 KLK1P06870 262 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 HOXD4P09016 255 aaPredicted RBP9.02□□□□□ -0.97
VRK3-216ENST00000599342 CNTFP26441 200 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 SSTR4P31391 388 aa9.02□□□□□ -0.97
VRK3-216ENST00000599342 ZFP36L2P47974 494 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms