RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 EDN3P14138 238 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 CPMP14384 443 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 NME2P22392 152 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 PIK3R1P27986 724 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 ARRB2P32121 409 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 SOX18P35713 384 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 SERPINB5P36952 375 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 ST13P50502 369 aaKnown RBP14.97□□□□□ -0.01
TRIM28-213ENST00000598355 SLC37A1P57057 533 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 MRPL49Q13405 166 aaKnown RBP14.97□□□□□ -0.01
TRIM28-213ENST00000598355 NR6A1Q15406 480 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 KANK2Q63ZY3 851 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 SPINK14Q6IE38 97 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 CROCCP2Q86T23 111 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 EXOC3L1Q86VI1 746 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 HOMEZQ8IX15 550 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 GPALPP1Q8IXQ4 340 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 TMEM178AQ8NBL3 297 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 OR4K14Q8NGD5 310 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 DNAJB8Q8NHS0 232 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.97□□□□□ -0.01
TRIM28-213ENST00000598355 THAP3Q8WTV1 239 aaPredicted RBP14.97□□□□□ -0.01
TRIM28-213ENST00000598355 PPWD1Q96BP3 646 aaKnown RBP14.97□□□□□ -0.01
TRIM28-213ENST00000598355 ZNF681Q96N22 645 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 FRMD6Q96NE9 622 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 RASL10BQ96S79 203 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 USP9YO00507 2555 aaPredicted RBP14.97□□□□□ -0.01
TRIM28-213ENST00000598355 DIDO1Q9BTC0 2240 aaKnown RBP14.97□□□□□ -0.01
TRIM28-213ENST00000598355 OR6C76A6NM76 312 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 DYRK3O43781 588 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 ZNF354AO60765 605 aaPredicted RBP14.96□□□□□ -0.01
TRIM28-213ENST00000598355 FLNBO75369 2602 aaKnown RBP14.96□□□□□ -0.01
TRIM28-213ENST00000598355 OR2J2O76002 312 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 CHRNGP07510 517 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 BPGMP07738 259 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 SP1P08047 785 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 FGF4P08620 206 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 DHRS4L1P0CG22 281 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 CD46P15529 392 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 TNNI3P19429 210 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 SSR4P51571 173 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 ERVK-8P63133 956 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 OC90Q02509 493 aaPredicted RBP14.96□□□□□ -0.01
TRIM28-213ENST00000598355 FUT7Q11130 342 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 KIAA0040Q15053 153 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 EBPQ15125 230 aaKnown RBP14.96□□□□□ -0.01
TRIM28-213ENST00000598355 CEBPEQ15744 281 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 MPEG1Q2M385 716 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 BEND6Q5SZJ8 279 aaPredicted RBP14.96□□□□□ -0.01
TRIM28-213ENST00000598355 CLEC6AQ6EIG7 209 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 SCIMPQ6UWF3 145 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 C16orf47Q6ZP98 133 aaPredicted RBP14.96□□□□□ -0.01
TRIM28-213ENST00000598355 FAM76AQ8TAV0 307 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 RIT1Q92963 219 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 FCRL1Q96LA6 429 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 FAIM2Q9BWQ8 316 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 SHCBP1LQ9BZQ2 653 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 TUBB1Q9H4B7 451 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 OLAHQ9NV23 265 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.96□□□□□ -0.012e-6■■■■□ 22
TRIM28-213ENST00000598355 EHD3Q9NZN3 535 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 HEY2Q9UBP5 337 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 ERVK-19Q9WJR5 959 aa14.96□□□□□ -0.01
TRIM28-213ENST00000598355 DNAJC13O75165 2243 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 ANKUB1A6NFN9 424 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 AZIN1O14977 448 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 OR10H2O60403 315 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 NADKO95544 446 aaPredicted RBP14.95□□□□□ -0.02
TRIM28-213ENST00000598355 CRYABP02511 175 aaKnown RBP14.95□□□□□ -0.02
TRIM28-213ENST00000598355 IL3P08700 152 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 CT62P0C5K7 136 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 DRD2P14416 443 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 SERPINB3P29508 390 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 DUSP2Q05923 314 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 ZNF763Q0D2J5 394 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 UGT3A2Q3SY77 523 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 ARL13AQ5H913 290 aaPredicted RBP14.95□□□□□ -0.02
TRIM28-213ENST00000598355 CEP85LQ5SZL2 805 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 SLC25A25Q6KCM7 469 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 LYPD8Q6UX82 237 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 GALNTL5Q7Z4T8 443 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 GALNT12Q8IXK2 581 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 CYP4Z2PQ8N1L4 340 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 ZNF441Q8N8Z8 693 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 OR5L2Q8NGL0 311 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 C16orf78Q8WTQ4 265 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 CTHRC1Q96CG8 243 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 CNRIP1Q96F85 164 aaPredicted RBP14.95□□□□□ -0.02
TRIM28-213ENST00000598355 C5orf34Q96MH7 638 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 MAP10Q9P2G4 905 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 ZNF639Q9UID6 485 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 DLGAP4Q9Y2H0 992 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 DNAJC15Q9Y5T4 150 aa14.95□□□□□ -0.02
TRIM28-213ENST00000598355 ZNF407Q9C0G0 2248 aa14.94□□□□□ -0.02
TRIM28-213ENST00000598355 GOLGA6L10A6NI86 522 aa14.94□□□□□ -0.02
TRIM28-213ENST00000598355 WWP2O00308 870 aa14.94□□□□□ -0.02
TRIM28-213ENST00000598355 TM9SF1O15321 606 aa14.94□□□□□ -0.02
TRIM28-213ENST00000598355 OR6B1O95007 311 aa14.94□□□□□ -0.02
TRIM28-213ENST00000598355 NEFHP12036 1026 aa14.94□□□□□ -0.02
TRIM28-213ENST00000598355 PORP16435 677 aaPredicted RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms