RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SLC25A37Q9NYZ2 338 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 PISDQ9UG56 409 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 NXT1Q9UKK6 140 aaKnown RBP14.32□□□□□ -0.12
TRIM28-209ENST00000597423 RRP15Q9Y3B9 282 aaKnown RBP14.32□□□□□ -0.12
TRIM28-209ENST00000597423 TMEM184BQ9Y519 407 aaPredicted RBP14.32□□□□□ -0.12
TRIM28-209ENST00000597423 MUC6Q6W4X9 2439 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 VPS13AQ96RL7 3174 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 RNF103-CHMP3A0A140T963 221 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 PLOD2O00469 737 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 EMC8O43402 210 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 FGF17O60258 216 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 BCAS2O75934 225 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-209ENST00000597423 TIAF1O95411 115 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 CYC1P08574 325 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 HSD17B1P14061 328 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 GPX2P18283 190 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 TNNI3P19429 210 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 PTPN6P29350 595 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 RORAP35398 523 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 LIPEQ05469 1076 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 TRAP1Q12931 704 aaKnown RBP14.31□□□□□ -0.12
TRIM28-209ENST00000597423 BNIP2Q12982 314 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 TP53BP2Q13625 1128 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 ERV3-1Q14264 604 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 MINDY4Q4G0A6 757 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 FAM180BQ6P0A1 224 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 ANGPTL8Q6UXH0 198 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 ST13P4Q8IZP2 240 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-209ENST00000597423 DTWD1Q8N5C7 304 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 SLC38A9Q8NBW4 561 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 TMEM52Q8NDY8 209 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 ZFP90Q8TF47 636 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 ELP4Q96EB1 424 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 FAM120BQ96EK7 910 aaKnown RBP14.31□□□□□ -0.12
TRIM28-209ENST00000597423 KCTD14Q9BQ13 255 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-209ENST00000597423 RBCK1Q9BYM8 510 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 MUC13Q9H3R2 512 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 ALG2Q9H553 416 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 CXorf36Q9H7Y0 433 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 SLAMF7Q9NQ25 335 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 PTGFRNQ9P2B2 879 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 CD300AQ9UGN4 299 aa14.31□□□□□ -0.12
TRIM28-209ENST00000597423 IGLV3-12A0A075B6K2 115 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 A0A087WV62 115 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 HYAL3O43820 417 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-209ENST00000597423 CDC123O75794 336 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-209ENST00000597423 SOX30O94993 753 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 IFNA16P05015 189 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 HEXBP07686 556 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 ZGLP1P0C6A0 271 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 ITIH1P19827 911 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 STT3AP46977 705 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 PRIM2P49643 509 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 MTPNP58546 118 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 BTG2P78543 158 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 IGLV3-21P80748 117 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-209ENST00000597423 ID2Q02363 134 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 TARDBPQ13148 414 aaKnown RBP eCLIP14.3□□□□□ -0.12
TRIM28-209ENST00000597423 FADDQ13158 208 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 TRIM25Q14258 630 aaKnown RBP14.3□□□□□ -0.12
TRIM28-209ENST00000597423 ZNF750Q32MQ0 723 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 GTDC1Q4AE62 458 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 RABL3Q5HYI8 236 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 C1orf146Q5VVC0 180 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 MLIPQ5VWP3 458 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 ERICH5Q6P6B1 374 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 C6orf15Q6UXA7 325 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-209ENST00000597423 C6orf120Q7Z4R8 191 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 NET1Q7Z628 596 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-209ENST00000597423 SERPINA11Q86U17 422 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 ZC3H7AQ8IWR0 971 aaKnown RBP14.3□□□□□ -0.12
TRIM28-209ENST00000597423 MSRB3Q8IXL7 192 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 PLPP5Q8NEB5 264 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 OR52N2Q8NGI0 321 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 OR9A2Q8NGT5 310 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 SUN3Q8TAQ9 357 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 STT3BQ8TCJ2 826 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 METTL21AQ8WXB1 218 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 RIT1Q92963 219 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 MR1Q95460 341 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 NEURL3Q96EH8 262 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 TRIM15Q9C019 465 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 SLC26A1Q9H2B4 701 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 KAT8Q9H7Z6 458 aaKnown RBP14.3□□□□□ -0.12
TRIM28-209ENST00000597423 WDR54Q9H977 334 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 LANCL2Q9NS86 450 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 ZCCHC3Q9NUD5 404 aaKnown RBP14.3□□□□□ -0.12
TRIM28-209ENST00000597423 DDX18Q9NVP1 670 aaKnown RBP14.3□□□□□ -0.12
TRIM28-209ENST00000597423 PADI1Q9ULC6 663 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 MKL2Q9ULH7 1088 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 B3GALT1Q9Y5Z6 326 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 DNAH14Q0VDD8 3507 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 USP34Q70CQ2 3546 aa14.3□□□□□ -0.12
TRIM28-209ENST00000597423 EP300Q09472 2414 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-209ENST00000597423 TMEM247A6NEH6 219 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 PRORSD1PA6NEY8 169 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 NME4O00746 187 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 GSTA4O15217 222 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 PDE5AO76074 875 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 STK17BO94768 372 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms